Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48507 * 109.47044 * 274.98586 * 3 2 1 5 5 H 1.48499 * 109.47481 * 34.98296 * 3 2 1 6 6 H 1.48499 * 109.47076 * 154.99044 * 3 2 1 7 7 C 1.39895 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99914 * 147.60585 * 7 2 1 9 9 C 1.41155 * 120.00242 * 327.60118 * 7 2 1 10 10 C 1.40867 * 120.16533 * 157.92742 * 9 7 2 11 11 C 1.36370 * 119.82892 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.17040 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83385 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00027 * 37.79369 * 13 12 11 15 15 O 1.21577 * 119.99912 * 356.69891 * 14 13 12 16 16 N 1.34768 * 120.00022 * 176.69531 * 14 13 12 17 17 C 1.46492 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47637 * 179.97438 * 17 16 14 19 19 C 1.38628 * 120.32430 * 89.99618 * 18 17 16 20 20 C 1.38590 * 118.48735 * 180.02562 * 19 18 17 21 21 C 1.39298 * 119.06226 * 0.02562 * 20 19 18 22 22 C 1.48166 * 119.72709 * 179.97438 * 21 20 19 23 23 N 1.34782 * 120.00505 * 180.02562 * 22 21 20 24 24 O 1.21514 * 119.99793 * 359.97438 * 22 21 20 25 25 N 1.32720 * 120.55092 * 0.25334 * 21 20 19 26 26 C 1.31523 * 121.64595 * 359.47711 * 25 21 20 27 27 C 1.39481 * 120.33053 * 0.25915 * 12 11 10 28 28 C 1.36380 * 120.16692 * 359.44556 * 27 12 11 29 29 H 0.97000 * 120.00210 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.08042 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.91294 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99573 * 217.79446 * 13 12 11 33 33 H 0.97005 * 120.00345 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47477 * 59.99775 * 17 16 14 35 35 H 1.08998 * 109.47010 * 299.99786 * 17 16 14 36 36 H 1.08005 * 120.75461 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.46488 * 180.02562 * 20 19 18 38 38 H 0.96999 * 119.99859 * 179.97438 * 23 22 21 39 39 H 0.96996 * 119.99348 * 359.71543 * 23 22 21 40 40 H 1.08000 * 119.55198 * 180.26968 * 26 25 21 41 41 H 1.07996 * 119.91631 * 179.69708 * 27 12 11 42 42 H 1.07997 * 120.08011 * 180.25858 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4969 2.6200 0.8027 6 1 3.5890 1.4120 0.5919 7 6 2.0082 -1.2115 -0.0005 8 1 2.9622 -1.2841 -0.5017 9 6 1.4673 -2.3392 0.6539 10 6 1.8850 -3.6351 0.2930 11 6 1.3574 -4.7197 0.9294 12 6 0.4062 -4.5483 1.9351 13 7 -0.1282 -5.6607 2.5800 14 6 0.6571 -6.7201 2.8586 15 8 1.8168 -6.7296 2.4938 16 7 0.1568 -7.7686 3.5415 17 6 1.0105 -8.9198 3.8448 18 6 0.2164 -9.9463 4.6109 19 6 -0.4806 -10.9374 3.9374 20 6 -1.1987 -11.8614 4.6798 21 6 -1.1958 -11.7623 6.0692 22 6 -1.9590 -12.7420 6.8773 23 7 -1.9604 -12.6511 8.2220 24 8 -2.5844 -13.6270 6.3276 25 7 -0.5194 -10.7944 6.6750 26 6 0.1744 -9.9076 5.9953 27 6 -0.0167 -3.2685 2.2939 28 6 0.5062 -2.1740 1.6705 29 1 -0.4850 0.8400 -0.0004 30 1 2.6205 -3.7694 -0.4864 31 1 1.6764 -5.7140 0.6535 32 1 -1.0657 -5.6732 2.8286 33 1 -0.7686 -7.7612 3.8323 34 1 1.8591 -8.5944 4.4465 35 1 1.3716 -9.3593 2.9150 36 1 -0.4642 -10.9883 2.8587 37 1 -1.7529 -12.6472 4.1879 38 1 -2.4604 -13.2923 8.7510 39 1 -1.4584 -11.9467 8.6609 40 1 0.7159 -9.1366 6.5233 41 1 -0.7572 -3.1438 3.0701 42 1 0.1808 -1.1836 1.9524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441229708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -33.515440 kcal Electronic energy + Delta-G solvation = -26719.512690 eV Core-core repulsion = 22663.032575 eV Total energy + Delta-G solvation = -4056.480115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.82751 -41.25223 -39.96921 -39.17278 -36.56285 -35.93833 -34.90832 -34.71660 -33.41098 -32.62524 -31.41844 -30.72673 -28.15552 -26.51233 -24.91570 -24.18301 -23.32416 -22.57544 -21.93812 -21.66176 -19.56527 -19.29512 -19.11358 -18.34613 -18.29314 -17.20064 -17.03608 -16.51431 -16.39526 -16.20911 -16.05059 -16.00648 -15.70509 -15.28600 -14.96254 -14.69873 -14.46707 -14.35873 -14.19031 -13.98872 -13.87020 -13.78831 -13.24955 -12.86923 -12.79608 -12.64978 -12.30329 -11.91328 -11.62793 -11.54731 -11.31791 -11.03313 -10.90061 -10.78806 -10.71677 -10.48746 -10.23183 -10.09330 -9.43243 -8.94627 -8.67671 -6.19207 -0.59565 0.14044 0.90392 1.18006 1.39656 1.45710 1.50302 1.58143 1.93770 2.21058 2.25089 2.31276 2.69490 2.76185 3.13253 3.47220 3.52083 3.74714 3.76275 3.84446 3.91807 4.11894 4.42720 4.52652 4.54161 4.71075 4.72045 4.92308 4.94285 5.10631 5.13882 5.19933 5.31274 5.41048 5.47035 5.49870 5.66353 5.75936 5.80576 6.06680 6.15138 6.22276 6.24779 6.41146 6.64670 6.66568 6.93168 7.04133 7.17728 7.18571 7.71249 8.23689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.036537 B = 0.001609 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.152913 B =17392.913554 C =17621.302504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.053 3.947 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.243 4.243 11 C -0.076 4.076 12 C 0.014 3.986 13 N -0.658 5.658 14 C 0.696 3.304 15 O -0.622 6.622 16 N -0.726 5.726 17 C 0.185 3.815 18 C -0.123 4.123 19 C -0.053 4.053 20 C -0.116 4.116 21 C 0.062 3.938 22 C 0.573 3.427 23 N -0.816 5.816 24 O -0.575 6.575 25 N -0.463 5.463 26 C 0.119 3.881 27 C -0.102 4.102 28 C -0.188 4.188 29 H 0.294 0.706 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.415 0.585 39 H 0.421 0.579 40 H 0.185 0.815 41 H 0.123 0.877 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -18.525 14.831 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.263 4.263 11 C -0.097 4.097 12 C -0.079 4.079 13 N -0.306 5.306 14 C 0.397 3.603 15 O -0.503 6.503 16 N -0.384 5.384 17 C 0.061 3.939 18 C -0.126 4.126 19 C -0.079 4.079 20 C -0.137 4.137 21 C -0.076 4.076 22 C 0.357 3.643 23 N -0.379 5.379 24 O -0.455 6.455 25 N -0.174 5.174 26 C -0.041 4.041 27 C -0.122 4.122 28 C -0.208 4.208 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.247 0.753 39 H 0.253 0.747 40 H 0.202 0.798 41 H 0.141 0.859 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.975 -18.926 14.962 24.633 hybrid contribution -0.399 0.724 -0.548 0.992 sum -5.374 -18.202 14.414 23.832 Atomic orbital electron populations 1.69944 1.09319 1.31354 1.31727 1.26686 0.95060 1.04327 0.90551 0.85399 0.79670 0.76322 0.79610 1.18507 1.18515 1.18598 1.19689 1.05818 0.95389 1.32661 0.90837 1.17908 0.90907 0.92406 0.90952 1.20719 1.07801 0.92763 1.05047 1.20429 0.97231 0.97479 0.94516 1.16862 1.05399 0.85511 1.00167 1.41816 1.12586 1.14866 1.61297 1.16101 0.84375 0.80659 0.79213 1.90907 1.18291 1.81416 1.59642 1.44860 1.15817 1.17406 1.60306 1.19947 0.91669 0.82875 0.99378 1.21026 0.98947 0.97184 0.95405 1.21853 0.92207 0.91643 1.02240 1.22247 0.98268 0.99744 0.93403 1.21160 0.98442 0.95426 0.92524 1.18047 0.79634 0.83043 0.83581 1.43546 1.52975 1.35590 1.05833 1.90825 1.45438 1.36517 1.72689 1.67591 1.06459 1.02487 1.40906 1.23114 0.94292 0.95822 0.90882 1.20419 1.00989 0.90885 0.99911 1.20624 1.03204 0.97134 0.99851 0.89565 0.89129 0.87877 0.75162 0.75385 0.90070 0.90407 0.81772 0.82995 0.75273 0.74689 0.79768 0.85922 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.53 11.78 21.82 0.26 -40.27 16 2 C 0.05 2.64 4.77 85.24 0.41 3.04 16 3 Si 0.97 37.33 29.66 68.60 2.03 39.37 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.51 -27.73 8.94 23.39 0.21 -27.52 16 8 H 0.07 3.95 8.02 -2.91 -0.02 3.93 16 9 C 0.08 4.45 5.57 -21.28 -0.12 4.33 16 10 C -0.24 -12.79 9.74 22.48 0.22 -12.57 16 11 C -0.08 -3.69 8.59 22.13 0.19 -3.50 16 12 C 0.01 0.62 6.25 38.56 0.24 0.86 16 13 N -0.66 -20.87 5.30 -316.79 -1.68 -22.55 16 14 C 0.70 21.60 8.37 179.06 1.50 23.10 16 15 O -0.62 -25.46 13.96 -3.96 -0.06 -25.52 16 16 N -0.73 -13.81 5.55 -482.33 -2.68 -16.49 16 17 C 0.19 2.92 5.82 85.63 0.50 3.42 16 18 C -0.12 -1.45 5.27 -19.69 -0.10 -1.56 16 19 C -0.05 -0.60 9.85 22.45 0.22 -0.38 16 20 C -0.12 -1.62 9.63 22.61 0.22 -1.40 16 21 C 0.06 0.98 6.75 41.90 0.28 1.26 16 22 C 0.57 9.88 8.08 86.88 0.70 10.58 16 23 N -0.82 -8.00 8.86 -175.38 -1.55 -9.56 16 24 O -0.58 -13.89 17.16 -3.76 -0.06 -13.96 16 25 N -0.46 -6.43 9.54 -184.92 -1.76 -8.20 16 26 C 0.12 1.40 10.86 84.82 0.92 2.32 16 27 C -0.10 -4.47 9.90 22.14 0.22 -4.25 16 28 C -0.19 -9.65 8.74 22.48 0.20 -9.45 16 29 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 30 H 0.09 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.10 4.93 6.45 -2.91 -0.02 4.91 16 32 H 0.41 9.61 8.84 -92.71 -0.82 8.79 16 33 H 0.41 5.40 8.48 -92.70 -0.79 4.61 16 34 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.15 2.06 7.64 -2.91 -0.02 2.04 16 38 H 0.41 2.66 8.93 -92.71 -0.83 1.83 16 39 H 0.42 2.82 8.16 -92.71 -0.76 2.07 16 40 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.10 5.08 6.52 -2.91 -0.02 5.06 16 Total: -1.00 -74.12 370.03 -1.76 -75.87 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -2.05 Total: 32.99 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.80 Total: -11.70 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -7.42 Total: -97.06 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.12 Total: -39.48 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.37 kcal Total: -74.12 -1.76 -75.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441229708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.357 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds