Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48502 * 109.46619 * 269.99618 * 3 2 1 5 5 H 1.48501 * 109.47349 * 29.99656 * 3 2 1 6 6 H 1.48493 * 109.46980 * 149.99907 * 3 2 1 7 7 C 1.39928 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00653 * 196.70941 * 7 2 1 9 9 C 1.41413 * 120.00013 * 16.71643 * 7 2 1 10 10 C 1.40775 * 120.21055 * 205.24600 * 9 7 2 11 11 C 1.37646 * 119.88440 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32405 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42485 * 359.97438 * 12 11 10 14 14 N 1.39936 * 119.94786 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00421 * 145.61866 * 14 13 12 16 16 O 1.21281 * 119.99688 * 354.88901 * 15 14 13 17 17 C 1.50696 * 119.99997 * 174.88650 * 15 14 13 18 18 H 1.09000 * 110.85860 * 303.79137 * 17 15 14 19 19 C 1.54789 * 110.83566 * 67.78562 * 17 15 14 20 20 C 1.51284 * 104.11916 * 143.12408 * 19 17 15 21 21 O 1.21302 * 124.94497 * 163.67859 * 20 19 17 22 22 N 1.34417 * 110.11510 * 343.40573 * 20 19 17 23 23 C 1.40766 * 124.35216 * 179.80352 * 22 20 19 24 24 C 1.40251 * 126.08598 * 179.71477 * 23 22 20 25 25 N 1.30823 * 108.33927 * 179.85503 * 24 23 22 26 26 N 1.40072 * 108.36867 * 0.40693 * 25 24 23 27 27 H 0.96994 * 126.05701 * 179.78001 * 26 25 24 28 28 C 1.35761 * 126.07880 * 0.02752 * 23 22 20 29 29 C 1.46770 * 111.30105 * 359.82417 * 22 20 19 30 30 C 1.38283 * 120.10784 * 0.27634 * 13 12 11 31 31 H 0.97003 * 119.99832 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.05832 * 359.97402 * 10 9 7 33 33 H 1.07996 * 119.83535 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.78641 * 180.02562 * 12 11 10 35 35 H 0.97005 * 119.99594 * 325.62498 * 14 13 12 36 36 H 1.08997 * 110.61649 * 24.42091 * 19 17 15 37 37 H 1.09005 * 110.42514 * 261.72672 * 19 17 15 38 38 H 1.08001 * 125.82963 * 0.02562 * 24 23 22 39 39 H 1.07998 * 126.21581 * 359.94125 * 28 23 22 40 40 H 1.09004 * 110.23944 * 136.01571 * 29 22 20 41 41 H 1.08998 * 110.24382 * 258.01318 * 29 22 20 42 42 H 1.08001 * 120.15850 * 179.74271 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0537 -1.2316 0.2694 9 6 1.3457 -2.4108 -0.3512 10 6 1.8175 -3.6475 0.1281 11 6 1.1674 -4.8103 -0.2180 12 6 0.0506 -4.7702 -1.0367 13 6 -0.4274 -3.5542 -1.5183 14 7 -1.5567 -3.5252 -2.3442 15 6 -2.4209 -2.4938 -2.2682 16 8 -2.2711 -1.6383 -1.4217 17 6 -3.5733 -2.4036 -3.2351 18 1 -3.2175 -2.4171 -4.2653 19 6 -4.5953 -3.5380 -2.9809 20 6 -5.9380 -2.8886 -3.2343 21 8 -6.9763 -3.4883 -3.4179 22 7 -5.8142 -1.5502 -3.2203 23 6 -6.8779 -0.6518 -3.4276 24 6 -6.7913 0.7479 -3.4154 25 7 -7.9823 1.2361 -3.6491 26 7 -8.8736 0.1675 -3.8096 27 1 -9.8240 0.2390 -3.9898 28 6 -8.1713 -0.9863 -3.6691 29 6 -4.4272 -1.1457 -2.9616 30 6 0.2151 -2.3757 -1.1859 31 1 -0.4850 0.8401 -0.0004 32 1 2.6880 -3.6838 0.7663 33 1 1.5303 -5.7587 0.1498 34 1 -0.4530 -5.6878 -1.3025 35 1 -1.7175 -4.2476 -2.9713 36 1 -4.5299 -3.8900 -1.9515 37 1 -4.4319 -4.3604 -3.6775 38 1 -5.8940 1.3244 -3.2451 39 1 -8.5692 -1.9880 -3.7377 40 1 -4.1376 -0.3393 -3.6354 41 1 -4.3134 -0.8308 -1.9243 42 1 -0.1525 -1.4325 -1.5623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456751879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = 18.349233 kcal Electronic energy + Delta-G solvation = -28508.511539 eV Core-core repulsion = 24454.280445 eV Total energy + Delta-G solvation = -4054.231094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.60830 -41.58218 -40.54635 -38.88561 -37.40160 -35.97342 -34.93003 -34.11652 -32.36411 -31.38462 -30.40012 -29.32373 -28.78665 -27.13338 -25.04837 -23.78852 -23.05556 -22.40699 -21.99190 -20.76863 -20.42109 -19.45016 -19.20403 -18.33982 -17.68173 -17.38276 -16.68672 -16.48178 -16.45184 -16.29204 -15.85930 -15.58455 -15.50859 -15.11073 -14.84892 -14.80414 -14.50426 -14.29068 -14.17341 -13.77210 -13.67900 -13.38237 -12.97246 -12.80556 -12.61118 -12.53245 -12.43875 -12.18364 -12.09299 -11.78942 -11.48643 -11.41549 -11.12647 -11.01880 -10.74378 -10.74098 -10.43726 -9.22144 -8.80383 -8.70331 -8.38257 -6.24437 0.69954 0.93204 1.14406 1.17073 1.40721 1.50723 1.52890 1.54035 1.87750 1.98768 2.08988 2.26118 2.34167 2.85521 3.13035 3.26918 3.73800 3.77724 3.86586 3.88720 3.96426 4.20821 4.41497 4.44217 4.54584 4.56237 4.65356 4.77250 4.79021 4.91547 4.96209 5.04383 5.21864 5.34226 5.36069 5.49682 5.69370 5.91867 5.92326 5.97955 6.10151 6.23944 6.26261 6.51391 6.54933 6.75835 6.80143 6.98280 7.05883 7.13452 7.50486 8.44356 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003055 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.074210 B = 9162.217781 C =11169.672236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.083 3.917 10 C -0.260 4.260 11 C -0.082 4.082 12 C -0.257 4.257 13 C 0.146 3.854 14 N -0.655 5.655 15 C 0.504 3.496 16 O -0.527 6.527 17 C -0.101 4.101 18 H 0.156 0.844 19 C -0.130 4.130 20 C 0.513 3.487 21 O -0.554 6.554 22 N -0.530 5.530 23 C -0.014 4.014 24 C 0.042 3.958 25 N -0.299 5.299 26 N -0.462 5.462 27 H 0.458 0.542 28 C 0.045 3.955 29 C 0.116 3.884 30 C -0.185 4.185 31 H 0.282 0.718 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.421 0.579 36 H 0.109 0.891 37 H 0.149 0.851 38 H 0.204 0.796 39 H 0.196 0.804 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 -2.981 -11.138 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.280 4.280 11 C -0.101 4.101 12 C -0.278 4.278 13 C 0.053 3.947 14 N -0.302 5.302 15 C 0.290 3.710 16 O -0.402 6.402 17 C -0.122 4.122 18 H 0.173 0.827 19 C -0.170 4.170 20 C 0.303 3.697 21 O -0.433 6.433 22 N -0.255 5.255 23 C -0.117 4.117 24 C -0.146 4.146 25 N -0.122 5.122 26 N -0.176 5.176 27 H 0.306 0.694 28 C -0.104 4.104 29 C -0.006 4.006 30 C -0.206 4.206 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.259 0.741 36 H 0.128 0.872 37 H 0.167 0.833 38 H 0.221 0.779 39 H 0.212 0.788 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.672 -1.420 -10.783 18.263 hybrid contribution 0.513 -0.152 0.246 0.589 sum -14.159 -1.572 -10.536 17.719 Atomic orbital electron populations 1.70003 1.08134 1.29842 1.33613 1.26685 0.95559 1.03971 0.92152 0.85355 0.79086 0.76799 0.79362 1.18750 1.19656 1.18517 1.19738 0.97714 0.92476 1.43467 0.91143 1.17894 0.91798 0.93087 0.89166 1.21179 1.04912 0.93514 1.08390 1.20717 0.95302 0.97048 0.96996 1.20492 1.02835 0.95702 1.08787 1.17670 0.87830 0.94240 0.94953 1.43235 1.22098 1.24935 1.39932 1.20786 0.83513 0.81597 0.85135 1.90966 1.73393 1.39505 1.36308 1.22190 0.92396 0.95925 1.01737 0.82664 1.22361 0.89159 0.98716 1.06758 1.21242 0.91351 0.81726 0.75373 1.90643 1.33684 1.67686 1.51289 1.45256 1.07860 1.05273 1.67113 1.17867 0.88397 0.89914 1.15507 1.24023 0.97494 0.91831 1.01296 1.77247 0.99950 1.11842 1.23196 1.46187 1.11421 1.02379 1.57571 0.69370 1.22628 0.91355 0.93298 1.03121 1.22101 0.77270 0.97399 1.03822 1.21263 0.99015 0.97040 1.03322 0.90721 0.89026 0.85760 0.85318 0.74144 0.87243 0.83349 0.77949 0.78776 0.87289 0.90268 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.80 10.96 21.82 0.24 -42.56 16 2 C 0.03 1.73 5.15 85.25 0.44 2.17 16 3 Si 0.97 39.38 29.59 68.60 2.03 41.41 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.50 -27.80 9.05 23.46 0.21 -27.59 16 8 H 0.07 3.77 7.90 -2.91 -0.02 3.75 16 9 C 0.08 4.55 5.56 -21.31 -0.12 4.43 16 10 C -0.26 -12.72 9.79 22.75 0.22 -12.50 16 11 C -0.08 -3.40 10.02 22.20 0.22 -3.18 16 12 C -0.26 -9.97 9.97 22.58 0.23 -9.75 16 13 C 0.15 6.14 6.25 38.10 0.24 6.38 16 14 N -0.66 -19.76 5.34 -303.66 -1.62 -21.38 16 15 C 0.50 15.41 6.78 87.66 0.59 16.01 16 16 O -0.53 -22.48 13.27 -3.03 -0.04 -22.52 16 17 C -0.10 -1.89 3.56 -10.43 -0.04 -1.93 16 18 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.13 -2.18 6.41 30.64 0.20 -1.98 16 20 C 0.51 11.65 7.97 87.90 0.70 12.35 16 21 O -0.55 -15.28 15.64 -3.10 -0.05 -15.33 16 22 N -0.53 -11.69 3.16 -628.35 -1.99 -13.68 16 23 C -0.01 -0.32 6.80 37.62 0.26 -0.07 16 24 C 0.04 0.89 11.53 85.33 0.98 1.87 16 25 N -0.30 -6.65 12.69 -56.78 -0.72 -7.37 16 26 N -0.46 -8.08 7.40 -56.81 -0.42 -8.50 16 27 H 0.46 4.68 8.96 -213.35 -1.91 2.77 16 28 C 0.05 0.92 11.18 83.50 0.93 1.86 16 29 C 0.12 2.46 6.28 86.83 0.55 3.01 16 30 C -0.18 -9.52 7.28 22.85 0.17 -9.36 16 31 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 32 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.42 8.44 8.82 -92.70 -0.82 7.62 16 36 H 0.11 2.05 7.89 -2.39 -0.02 2.03 16 37 H 0.15 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.20 3.80 6.51 -2.91 -0.02 3.78 16 40 H 0.11 1.90 8.13 -2.38 -0.02 1.88 16 41 H 0.08 2.14 6.96 -2.39 -0.02 2.12 16 42 H 0.12 6.36 4.63 -2.91 -0.01 6.34 16 Total: -1.00 -75.98 359.57 1.59 -74.38 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -1.62 Total: 33.83 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 5.78 Total: -18.28 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -4.51 Total: -93.49 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -75.98 1.59 -74.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.733 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds