Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 119.92681 * 2 1 4 4 C 1.38334 * 120.29317 * 179.76646 * 3 2 1 5 5 C 1.37981 * 120.14636 * 0.51801 * 4 3 2 6 6 S 1.76200 * 120.07551 * 179.76844 * 5 4 3 7 7 N 1.65597 * 107.22113 * 114.72190 * 6 5 4 8 8 O 1.42100 * 106.40337 * 1.17895 * 6 5 4 9 9 O 1.42104 * 106.39700 * 228.26056 * 6 5 4 10 10 C 1.39559 * 119.85018 * 359.48552 * 5 4 3 11 11 C 1.47847 * 120.14616 * 180.27572 * 10 5 4 12 12 O 1.21555 * 119.99643 * 0.02562 * 11 10 5 13 13 N 1.34768 * 119.99955 * 180.02562 * 11 10 5 14 14 C 1.46506 * 119.99783 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47098 * 180.02562 * 14 13 11 16 16 C 1.53010 * 109.46708 * 299.99366 * 15 14 13 17 17 C 1.52998 * 109.47596 * 59.99569 * 15 14 13 18 18 C 1.50704 * 109.47171 * 180.02562 * 15 14 13 19 19 H 1.08007 * 119.99559 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00165 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99927 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00105 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46956 * 60.00574 * 22 20 18 24 24 H 1.48501 * 109.46922 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47024 * 300.00423 * 22 20 18 26 26 C 1.37939 * 119.93154 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46821 * 269.96968 * 1 2 3 28 28 H 1.08995 * 109.47674 * 29.97397 * 1 2 3 29 29 H 1.09007 * 109.46895 * 149.97535 * 1 2 3 30 30 H 1.08000 * 119.85201 * 0.03009 * 3 2 1 31 31 H 1.08001 * 119.93188 * 180.25989 * 4 3 2 32 32 H 0.97001 * 120.00224 * 240.00401 * 7 6 5 33 33 H 0.97005 * 120.00050 * 59.72170 * 7 6 5 34 34 H 0.96992 * 120.00478 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.46955 * 299.99338 * 14 13 11 36 36 H 1.08998 * 109.47319 * 59.99347 * 14 13 11 37 37 H 1.09002 * 109.46854 * 60.00611 * 16 15 14 38 38 H 1.08999 * 109.47048 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.47002 * 300.00481 * 16 15 14 40 40 H 1.08996 * 109.46962 * 60.00033 * 17 15 14 41 41 H 1.08999 * 109.47327 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46869 * 300.00432 * 17 15 14 43 43 H 0.97000 * 120.00442 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.06819 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0049 5 6 4.2813 0.0195 -0.0010 6 16 6.0432 0.0330 -0.0010 7 7 6.5385 -0.6319 1.4325 8 8 6.4341 1.3987 0.0338 9 8 6.4513 -0.8664 -1.0227 10 6 3.5912 -1.1935 -0.0011 11 6 4.3353 -2.4711 -0.0012 12 8 5.5508 -2.4664 -0.0008 13 7 3.6659 -3.6408 -0.0018 14 6 4.4033 -4.9067 -0.0013 15 6 3.4135 -6.0735 -0.0027 16 6 2.5324 -5.9962 1.2458 17 6 2.5349 -5.9955 -1.2528 18 6 4.1721 -7.3757 -0.0017 19 1 5.2521 -7.3715 -0.0006 20 6 3.4873 -8.5724 -0.0021 21 7 2.1722 -8.5774 -0.0030 22 14 4.4275 -10.1865 -0.0015 23 1 5.2807 -10.2619 1.2116 24 1 3.4668 -11.3189 -0.0028 25 1 5.2824 -10.2618 -1.2134 26 6 2.1952 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6538 2.1326 0.0005 31 1 4.1136 2.1476 0.0091 32 1 7.0793 -0.1117 2.0472 33 1 6.2845 -1.5402 1.6593 34 1 2.6960 -3.6446 -0.0017 35 1 5.0307 -4.9620 -0.8909 36 1 5.0297 -4.9621 0.8890 37 1 1.9837 -5.0543 1.2454 38 1 1.8275 -6.8276 1.2450 39 1 3.1584 -6.0517 2.1363 40 1 3.1626 -6.0505 -2.1421 41 1 1.8295 -6.8264 -1.2535 42 1 1.9863 -5.0536 -1.2531 43 1 1.6904 -9.4193 -0.0037 44 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -105.908855 kcal Electronic energy + Delta-G solvation = -28378.715015 eV Core-core repulsion = 24422.246886 eV Total energy + Delta-G solvation = -3956.468129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57462 -39.80377 -38.43256 -37.78467 -36.73104 -35.23115 -34.03869 -33.88156 -33.16860 -31.97458 -28.24695 -27.57116 -27.54255 -26.98313 -24.87595 -23.16012 -21.63043 -20.80717 -20.36217 -19.47541 -18.39099 -18.30117 -17.72004 -17.52406 -17.16118 -16.56873 -16.53723 -16.08754 -15.74555 -15.62850 -15.41268 -14.87620 -14.82704 -14.62541 -14.40276 -13.99126 -13.38298 -13.27441 -13.22368 -13.15617 -13.10641 -13.06782 -13.00216 -12.83720 -12.65808 -12.61327 -12.46779 -12.24460 -12.12772 -11.94493 -11.48906 -11.29464 -11.15953 -10.97160 -10.70838 -10.39596 -10.27235 -10.17471 -9.94165 -8.01862 -6.16958 -0.69113 -0.35422 -0.03948 1.44819 1.46623 1.52542 1.63552 2.07477 2.33902 2.47881 2.53784 2.82227 3.22325 3.34789 3.56145 3.72228 3.85537 4.17509 4.26719 4.38525 4.42263 4.51870 4.55915 4.69761 4.77030 4.83964 4.88449 4.96560 4.99292 5.04167 5.09363 5.19291 5.21151 5.23166 5.35416 5.36556 5.53469 5.66978 5.68470 5.70938 6.15195 6.20999 6.41129 6.43120 6.47599 6.86326 7.07792 7.50681 8.96851 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.003388 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.739086 B = 8263.625117 C = 9746.281526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.112 4.112 4 C -0.030 4.030 5 C -0.652 4.652 6 S 2.726 3.274 7 N -1.226 6.226 8 O -0.997 6.997 9 O -0.978 6.978 10 C -0.053 4.053 11 C 0.519 3.481 12 O -0.543 6.543 13 N -0.691 5.691 14 C 0.143 3.857 15 C 0.050 3.950 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.528 4.528 19 H 0.045 0.955 20 C 0.031 3.969 21 N -0.898 5.898 22 Si 0.942 3.058 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.280 1.280 26 C -0.112 4.112 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.163 0.837 32 H 0.423 0.577 33 H 0.423 0.577 34 H 0.409 0.591 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.015 0.985 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 20.682 4.052 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.131 4.131 4 C -0.049 4.049 5 C -0.740 4.740 6 S 2.812 3.188 7 N -0.904 5.904 8 O -0.987 6.987 9 O -0.967 6.967 10 C -0.057 4.057 11 C 0.306 3.694 12 O -0.424 6.424 13 N -0.342 5.342 14 C 0.020 3.980 15 C 0.050 3.950 16 C -0.178 4.178 17 C -0.181 4.181 18 C -0.567 4.567 19 H 0.064 0.936 20 C -0.169 4.169 21 N -0.536 5.536 22 Si 0.770 3.230 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.131 4.131 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.254 0.746 33 H 0.255 0.745 34 H 0.248 0.752 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.982 20.866 3.216 21.693 hybrid contribution -0.180 -1.747 0.436 1.810 sum -5.161 19.119 3.652 20.137 Atomic orbital electron populations 1.21065 0.87470 1.04994 1.04457 1.20600 0.98543 0.92091 0.92152 1.21833 0.93438 0.99620 0.98179 1.21276 0.95698 0.96355 0.91610 1.30958 1.27402 0.98575 1.17047 1.00575 0.73516 0.71344 0.73366 1.53099 1.68999 1.27437 1.40829 1.93513 1.82364 1.35615 1.87253 1.93631 1.80578 1.64979 1.57547 1.19528 0.95198 0.90696 1.00238 1.18966 0.87754 0.85014 0.77645 1.90811 1.13607 1.87107 1.50916 1.45952 1.11111 1.05168 1.71975 1.21456 0.94848 0.81728 0.99953 1.18378 0.92263 0.90823 0.93560 1.21676 0.99583 0.99886 0.96705 1.21699 0.99634 0.99843 0.96886 1.21229 0.92677 0.91474 1.51318 0.93633 1.25399 0.95625 1.01192 0.94701 1.69883 1.06471 1.26672 1.50608 0.85860 0.78609 0.80194 0.78385 1.20166 1.20892 1.20559 1.21620 0.91848 1.00360 0.99270 0.88699 0.88783 0.90261 0.80739 0.81912 0.74620 0.74491 0.75237 0.94011 0.92712 0.94380 0.91845 0.95894 0.96532 0.91705 0.94529 0.93038 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.01 71.23 0.71 -0.29 16 2 C -0.03 -0.50 5.87 -19.90 -0.12 -0.62 16 3 C -0.11 -1.55 9.69 22.33 0.22 -1.33 16 4 C -0.03 -0.58 9.54 22.23 0.21 -0.37 16 5 C -0.65 -16.69 5.94 22.53 0.13 -16.55 16 6 S 2.73 79.72 5.47 -56.49 -0.31 79.41 16 7 N -1.23 -29.30 9.22 37.02 0.34 -28.96 16 8 O -1.00 -29.98 16.97 -128.00 -2.17 -32.15 16 9 O -0.98 -38.62 14.77 -118.17 -1.75 -40.37 16 10 C -0.05 -1.41 5.87 -20.09 -0.12 -1.53 16 11 C 0.52 17.37 7.67 86.79 0.67 18.04 16 12 O -0.54 -21.01 9.43 20.27 0.19 -20.81 16 13 N -0.69 -22.90 4.91 -465.97 -2.29 -25.19 16 14 C 0.14 5.85 4.50 86.38 0.39 6.24 16 15 C 0.05 2.24 0.50 -52.92 -0.03 2.21 16 16 C -0.12 -5.03 8.08 71.99 0.58 -4.45 16 17 C -0.12 -5.31 8.08 71.98 0.58 -4.72 16 18 C -0.53 -27.24 8.01 25.60 0.21 -27.03 16 19 H 0.05 2.40 7.74 -2.91 -0.02 2.38 16 20 C 0.03 1.59 5.15 84.65 0.44 2.02 16 21 N -0.90 -46.61 9.35 21.45 0.20 -46.41 16 22 Si 0.94 41.97 29.54 68.60 2.03 44.00 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.11 -2.27 9.19 22.53 0.21 -2.06 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.44 8.08 -2.39 -0.02 0.42 16 29 H 0.08 0.65 8.08 -2.38 -0.02 0.63 16 30 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 31 H 0.16 2.57 7.33 -2.91 -0.02 2.55 16 32 H 0.42 7.43 8.96 -96.74 -0.87 6.56 16 33 H 0.42 10.83 6.79 -96.74 -0.66 10.18 16 34 H 0.41 11.54 4.20 -92.71 -0.39 11.15 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.29 6.86 -2.39 -0.02 1.27 16 38 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 42 H 0.04 1.30 6.86 -2.38 -0.02 1.28 16 43 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 44 H 0.15 2.55 6.41 -2.91 -0.02 2.53 16 Total: -1.00 -70.70 359.62 -0.52 -71.22 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.85 Total: 29.70 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.08 Total: -30.44 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -1.75 Total: -100.55 kcal Atomic # 8 Polarization: -89.61 SS G_CDS: -3.73 Total: -93.33 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 79.72 SS G_CDS: -0.31 Total: 79.41 kcal Total: -70.70 -0.52 -71.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.686 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds