Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00577 * 2 1 4 4 H 1.48500 * 109.46886 * 269.99914 * 3 2 1 5 5 H 1.48499 * 109.46769 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47360 * 149.99774 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47278 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.35979 * 117.00081 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49671 * 0.02562 * 12 11 10 14 14 C 1.38791 * 118.45022 * 179.97438 * 13 12 11 15 15 C 1.38083 * 119.35972 * 0.25135 * 14 13 12 16 16 N 1.31966 * 120.95858 * 359.47563 * 15 14 13 17 17 C 1.32294 * 121.68195 * 0.53569 * 16 15 14 18 18 N 1.39443 * 119.72876 * 179.70956 * 17 16 15 19 19 C 1.34780 * 119.99854 * 0.02562 * 18 17 16 20 20 O 1.21674 * 120.00283 * 359.97438 * 19 18 17 21 21 C 1.46606 * 119.99808 * 179.97438 * 19 18 17 22 22 C 1.34699 * 119.99621 * 180.02562 * 21 19 18 23 23 C 1.47347 * 119.99869 * 180.02562 * 22 21 19 24 24 C 1.39830 * 120.13552 * 179.71835 * 23 22 21 25 25 N 1.31974 * 119.82950 * 179.77809 * 24 23 22 26 26 C 1.32203 * 120.11382 * 0.50121 * 25 24 23 27 27 C 1.38657 * 120.26778 * 359.73505 * 26 25 24 28 28 N 1.31844 * 120.16766 * 0.02562 * 27 26 25 29 29 H 0.96999 * 119.99340 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47205 * 59.99808 * 9 7 2 31 31 H 1.09003 * 109.47579 * 300.00301 * 9 7 2 32 32 H 1.08997 * 109.47231 * 59.99737 * 10 9 7 33 33 H 1.08997 * 109.47164 * 299.99889 * 10 9 7 34 34 H 1.07999 * 120.77525 * 359.95112 * 13 12 11 35 35 H 1.08002 * 120.31752 * 179.97438 * 14 13 12 36 36 H 1.07994 * 119.52134 * 179.72258 * 15 14 13 37 37 H 0.97003 * 120.00637 * 180.02562 * 18 17 16 38 38 H 1.07992 * 120.00301 * 0.02562 * 21 19 18 39 39 H 1.07998 * 119.99634 * 0.02562 * 22 21 19 40 40 H 1.07997 * 120.07998 * 0.03364 * 24 23 22 41 41 H 1.08001 * 119.87067 * 179.71253 * 26 25 24 42 42 H 1.07997 * 119.91887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5305 -4.8997 0.0024 12 6 2.2710 -6.0401 0.0030 13 6 3.6575 -5.9796 0.0036 14 6 4.3713 -7.1699 0.0048 15 6 3.6874 -8.3695 0.0001 16 7 2.3680 -8.3987 0.0048 17 6 1.6484 -7.2886 0.0037 18 7 0.2562 -7.3670 0.0028 19 6 -0.3510 -8.5703 0.0035 20 8 0.3157 -9.5881 0.0045 21 6 -1.8147 -8.6527 0.0031 22 6 -2.4215 -9.8553 0.0043 23 6 -3.8926 -9.9382 0.0033 24 6 -4.5255 -11.1850 -0.0014 25 7 -5.8435 -11.2523 0.0022 26 6 -6.5642 -10.1439 0.0001 27 6 -5.9412 -8.9052 -0.0002 28 7 -4.6252 -8.8254 0.0010 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6041 0.8922 33 1 2.8724 -3.6049 -0.8877 34 1 4.1691 -5.0285 0.0028 35 1 5.4513 -7.1580 0.0048 36 1 4.2402 -9.2972 -0.0036 37 1 -0.2753 -6.5556 0.0016 38 1 -2.4064 -7.7493 0.0018 39 1 -1.8296 -10.7586 0.0060 40 1 -3.9371 -12.0907 -0.0037 41 1 -7.6426 -10.2036 -0.0016 42 1 -6.5355 -8.0034 -0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491461618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = 38.969092 kcal Electronic energy + Delta-G solvation = -26858.326465 eV Core-core repulsion = 22804.989515 eV Total energy + Delta-G solvation = -4053.336950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37220 -40.88861 -39.29961 -37.79155 -35.38824 -34.82898 -33.78555 -33.48106 -31.71921 -31.04077 -30.44550 -29.08944 -26.04622 -25.42162 -24.91322 -23.80385 -22.89885 -21.89929 -20.79842 -19.85410 -18.48694 -18.05888 -17.57327 -17.27262 -17.15741 -16.33291 -16.16909 -15.81737 -15.64963 -15.23209 -14.92897 -14.91484 -14.59131 -14.41196 -14.06050 -13.88790 -13.49546 -13.24739 -12.85380 -12.41402 -12.39950 -12.03998 -11.96980 -11.94831 -11.87572 -11.07677 -11.00049 -10.86816 -10.68988 -10.66538 -10.37470 -10.05879 -9.78725 -9.53753 -9.42199 -9.24871 -9.09227 -9.04175 -8.52785 -7.67799 -6.18440 -4.23396 -0.15520 0.65023 1.12774 1.43243 1.60955 2.83701 3.11656 3.22165 3.28216 3.30475 3.44842 3.51341 3.55516 3.82549 3.98605 4.01585 4.24892 4.33313 4.54369 4.71519 4.75833 4.93677 4.95373 5.00363 5.05293 5.11382 5.18465 5.26246 5.44812 5.78197 5.85603 5.89087 5.92547 5.97675 6.04676 6.17692 6.33074 6.53141 6.61070 6.83402 7.22634 7.32759 7.33731 7.52210 7.62563 7.84114 8.01385 8.13799 8.30376 8.81833 9.41536 10.92985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.002335 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.887508 B =11989.181863 C =15084.622231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.069 3.931 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.074 3.926 16 N -0.443 5.443 17 C 0.327 3.673 18 N -0.643 5.643 19 C 0.534 3.466 20 O -0.481 6.481 21 C -0.147 4.147 22 C -0.045 4.045 23 C 0.099 3.901 24 C 0.071 3.929 25 N -0.439 5.439 26 C 0.048 3.952 27 C 0.060 3.940 28 N -0.429 5.429 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.427 0.573 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 -19.895 -0.016 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.018 3.982 13 C -0.175 4.175 14 C -0.180 4.180 15 C -0.082 4.082 16 N -0.158 5.158 17 C 0.094 3.906 18 N -0.291 5.291 19 C 0.322 3.678 20 O -0.353 6.353 21 C -0.170 4.170 22 C -0.066 4.066 23 C -0.038 4.038 24 C -0.090 4.090 25 N -0.152 5.152 26 C -0.112 4.112 27 C -0.102 4.102 28 N -0.144 5.144 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.192 0.808 41 H 0.189 0.811 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.350 -21.293 -0.004 22.220 hybrid contribution 0.783 2.467 -0.009 2.588 sum -5.567 -18.826 -0.013 19.632 Atomic orbital electron populations 1.69964 1.06101 1.27082 1.49489 1.24984 0.94917 0.99415 0.94803 0.86484 0.79750 0.82882 0.78266 1.20461 1.21009 1.19747 1.20943 0.93058 0.90125 1.52532 0.92337 1.19128 0.94132 0.88892 0.98923 1.23403 0.97261 0.80278 0.99852 1.86106 1.36252 1.12912 1.87509 1.19602 0.91160 0.87112 1.00358 1.21615 0.92227 1.00394 1.03266 1.21903 1.01218 0.92527 1.02322 1.22413 0.88781 0.97908 0.99130 1.67630 1.07896 1.26872 1.13432 1.17766 0.84724 0.87015 1.01094 1.43304 1.03931 1.10389 1.71451 1.18504 0.88290 0.83343 0.77701 1.90898 1.65925 1.33800 1.44652 1.23176 0.93162 1.00144 1.00475 1.22012 0.89319 0.99255 0.95965 1.21033 0.95031 0.90308 0.97436 1.23925 0.91325 0.98268 0.95456 1.68447 1.06821 1.31636 1.08335 1.23945 1.01986 0.89100 0.96130 1.23864 0.91110 0.99524 0.95706 1.68541 1.07107 1.30754 1.07995 0.92632 0.95325 0.95321 0.92916 0.92916 0.83695 0.84756 0.82575 0.73481 0.83750 0.83097 0.80793 0.81097 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.29 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.77 9.38 -19.67 -0.18 -5.95 16 12 C 0.07 1.14 6.72 -38.91 -0.26 0.88 16 13 C -0.15 -2.14 9.14 -39.18 -0.36 -2.49 16 14 C -0.16 -1.94 10.10 -39.43 -0.40 -2.34 16 15 C 0.07 0.99 11.17 -17.55 -0.20 0.80 16 16 N -0.44 -7.32 7.87 -12.24 -0.10 -7.41 16 17 C 0.33 5.39 7.44 -154.54 -1.15 4.24 16 18 N -0.64 -9.45 5.38 -12.51 -0.07 -9.51 16 19 C 0.53 7.58 7.71 -12.88 -0.10 7.48 16 20 O -0.48 -8.12 14.48 5.21 0.08 -8.04 16 21 C -0.15 -1.62 9.56 -37.46 -0.36 -1.98 16 22 C -0.04 -0.43 9.46 -37.13 -0.35 -0.78 16 23 C 0.10 0.94 6.70 -82.96 -0.56 0.38 16 24 C 0.07 0.58 10.98 -16.90 -0.19 0.39 16 25 N -0.44 -3.85 10.49 -12.64 -0.13 -3.98 16 26 C 0.05 0.32 11.22 -17.24 -0.19 0.13 16 27 C 0.06 0.43 11.22 -17.39 -0.20 0.24 16 28 N -0.43 -4.26 9.51 -9.72 -0.09 -4.35 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 34 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.43 5.62 8.02 -40.82 -0.33 5.29 16 38 H 0.14 1.48 7.43 -52.49 -0.39 1.10 16 39 H 0.15 1.31 7.52 -52.49 -0.39 0.91 16 40 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -34.28 374.72 -8.57 -42.86 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.75 Total: 3.82 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.69 Total: -3.90 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.35 Total: -50.03 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.11 Total: -14.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.28 -8.57 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491461618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.828 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds