Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00577 * 2 1 4 4 H 1.48500 * 109.46886 * 269.99914 * 3 2 1 5 5 H 1.48499 * 109.46769 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47360 * 149.99774 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47278 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.35979 * 117.00081 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49671 * 0.02562 * 12 11 10 14 14 C 1.38791 * 118.45022 * 179.97438 * 13 12 11 15 15 C 1.38083 * 119.35972 * 0.25135 * 14 13 12 16 16 N 1.31966 * 120.95858 * 359.47563 * 15 14 13 17 17 C 1.32294 * 121.68195 * 0.53569 * 16 15 14 18 18 N 1.39443 * 119.72876 * 179.70956 * 17 16 15 19 19 C 1.34780 * 119.99854 * 0.02562 * 18 17 16 20 20 O 1.21674 * 120.00283 * 359.97438 * 19 18 17 21 21 C 1.46606 * 119.99808 * 179.97438 * 19 18 17 22 22 C 1.34699 * 119.99621 * 180.02562 * 21 19 18 23 23 C 1.47347 * 119.99869 * 180.02562 * 22 21 19 24 24 C 1.39830 * 120.13552 * 179.71835 * 23 22 21 25 25 N 1.31974 * 119.82950 * 179.77809 * 24 23 22 26 26 C 1.32203 * 120.11382 * 0.50121 * 25 24 23 27 27 C 1.38657 * 120.26778 * 359.73505 * 26 25 24 28 28 N 1.31844 * 120.16766 * 0.02562 * 27 26 25 29 29 H 0.96999 * 119.99340 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47205 * 59.99808 * 9 7 2 31 31 H 1.09003 * 109.47579 * 300.00301 * 9 7 2 32 32 H 1.08997 * 109.47231 * 59.99737 * 10 9 7 33 33 H 1.08997 * 109.47164 * 299.99889 * 10 9 7 34 34 H 1.07999 * 120.77525 * 359.95112 * 13 12 11 35 35 H 1.08002 * 120.31752 * 179.97438 * 14 13 12 36 36 H 1.07994 * 119.52134 * 179.72258 * 15 14 13 37 37 H 0.97003 * 120.00637 * 180.02562 * 18 17 16 38 38 H 1.07992 * 120.00301 * 0.02562 * 21 19 18 39 39 H 1.07998 * 119.99634 * 0.02562 * 22 21 19 40 40 H 1.07997 * 120.07998 * 0.03364 * 24 23 22 41 41 H 1.08001 * 119.87067 * 179.71253 * 26 25 24 42 42 H 1.07997 * 119.91887 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5305 -4.8997 0.0024 12 6 2.2710 -6.0401 0.0030 13 6 3.6575 -5.9796 0.0036 14 6 4.3713 -7.1699 0.0048 15 6 3.6874 -8.3695 0.0001 16 7 2.3680 -8.3987 0.0048 17 6 1.6484 -7.2886 0.0037 18 7 0.2562 -7.3670 0.0028 19 6 -0.3510 -8.5703 0.0035 20 8 0.3157 -9.5881 0.0045 21 6 -1.8147 -8.6527 0.0031 22 6 -2.4215 -9.8553 0.0043 23 6 -3.8926 -9.9382 0.0033 24 6 -4.5255 -11.1850 -0.0014 25 7 -5.8435 -11.2523 0.0022 26 6 -6.5642 -10.1439 0.0001 27 6 -5.9412 -8.9052 -0.0002 28 7 -4.6252 -8.8254 0.0010 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6041 0.8922 33 1 2.8724 -3.6049 -0.8877 34 1 4.1691 -5.0285 0.0028 35 1 5.4513 -7.1580 0.0048 36 1 4.2402 -9.2972 -0.0036 37 1 -0.2753 -6.5556 0.0016 38 1 -2.4064 -7.7493 0.0018 39 1 -1.8296 -10.7586 0.0060 40 1 -3.9371 -12.0907 -0.0037 41 1 -7.6426 -10.2036 -0.0016 42 1 -6.5355 -8.0034 -0.0015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491461618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = 16.512770 kcal Electronic energy + Delta-G solvation = -26859.300244 eV Core-core repulsion = 22804.989515 eV Total energy + Delta-G solvation = -4054.310729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.10230 -41.93732 -40.45736 -39.09671 -36.20507 -35.86270 -35.44629 -34.49738 -32.92216 -32.36586 -31.59246 -30.30710 -27.17676 -26.82260 -25.60241 -24.94877 -24.08709 -23.10663 -22.24553 -20.85785 -19.59560 -19.07795 -18.77004 -18.12367 -17.95192 -17.86946 -17.24436 -17.17959 -16.66000 -16.43079 -16.24369 -15.94586 -15.81406 -15.34624 -15.16000 -14.78149 -14.75679 -14.34721 -14.13983 -13.85067 -13.63562 -13.30394 -13.17004 -12.80564 -12.74603 -12.64975 -12.56136 -12.44244 -11.91101 -11.72220 -11.63849 -11.49473 -11.46552 -11.39351 -10.60887 -10.41752 -10.25724 -10.13265 -9.76674 -8.85968 -8.25598 -6.38194 -0.87390 0.01354 0.11100 0.28833 0.78203 1.42503 1.43630 1.54526 1.79548 2.11033 2.14084 2.44344 2.78239 2.90033 2.90438 3.09664 3.25823 3.33674 3.47418 3.64590 3.85638 3.92382 4.04546 4.10186 4.15375 4.23222 4.29425 4.33253 4.43351 4.47081 4.56461 4.74707 4.92497 5.00947 5.12299 5.18189 5.27931 5.31478 5.36185 5.50321 5.53724 5.73559 6.07807 6.15823 6.23392 6.32847 6.72273 6.76814 6.89026 7.20645 7.31835 8.87116 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.002335 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.887508 B =11989.181863 C =15084.622231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.084 3.916 11 O -0.329 6.329 12 C 0.042 3.958 13 C -0.149 4.149 14 C -0.143 4.143 15 C 0.074 3.926 16 N -0.472 5.472 17 C 0.308 3.692 18 N -0.646 5.646 19 C 0.536 3.464 20 O -0.514 6.514 21 C -0.168 4.168 22 C -0.018 4.018 23 C 0.075 3.925 24 C 0.074 3.926 25 N -0.461 5.461 26 C 0.060 3.940 27 C 0.053 3.947 28 N -0.455 5.455 29 H 0.266 0.734 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.189 0.811 37 H 0.429 0.571 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.197 0.803 41 H 0.207 0.793 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -20.474 -0.018 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.008 4.008 10 C 0.009 3.991 11 O -0.243 6.243 12 C -0.009 4.009 13 C -0.175 4.175 14 C -0.164 4.164 15 C -0.083 4.083 16 N -0.187 5.187 17 C 0.077 3.923 18 N -0.293 5.293 19 C 0.326 3.674 20 O -0.389 6.389 21 C -0.191 4.191 22 C -0.039 4.039 23 C -0.062 4.062 24 C -0.085 4.085 25 N -0.175 5.175 26 C -0.100 4.100 27 C -0.109 4.109 28 N -0.171 5.171 29 H 0.075 0.925 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.205 0.795 37 H 0.268 0.732 38 H 0.165 0.835 39 H 0.178 0.822 40 H 0.214 0.786 41 H 0.224 0.776 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.253 -21.886 -0.006 22.508 hybrid contribution 0.345 2.483 -0.010 2.507 sum -4.907 -19.403 -0.016 20.014 Atomic orbital electron populations 1.70104 1.07927 1.28124 1.50709 1.25978 0.95774 1.03493 0.94334 0.85354 0.78667 0.77925 0.78560 1.19717 1.20918 1.18320 1.21401 0.93884 0.91012 1.51891 0.91034 1.18949 0.94540 0.91057 0.96250 1.22958 0.95598 0.79579 1.00933 1.86032 1.36696 1.13069 1.88497 1.19764 0.92215 0.86185 1.02730 1.21914 0.91366 1.01931 1.02327 1.22300 1.03120 0.91027 0.99944 1.23092 0.88039 0.99844 0.97316 1.67692 1.09523 1.27027 1.14462 1.17979 0.85392 0.87189 1.01778 1.43409 1.03780 1.10784 1.71374 1.18903 0.89269 0.82684 0.76557 1.90856 1.66848 1.34538 1.46632 1.22946 0.91299 1.00984 1.03838 1.22185 0.89934 0.98976 0.92765 1.21016 0.94657 0.90952 0.99542 1.24257 0.91538 0.98558 0.94159 1.68541 1.07053 1.32585 1.09359 1.24560 1.03542 0.88353 0.93512 1.24396 0.90415 1.01039 0.95030 1.68496 1.08589 1.31466 1.08504 0.92525 0.98062 0.98061 0.91745 0.91716 0.82513 0.80588 0.79456 0.73226 0.83458 0.82224 0.78587 0.77626 0.78091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.54 -29.16 9.11 25.60 0.23 -28.93 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.49 5.34 29.85 0.16 1.65 16 10 C 0.08 3.30 4.70 71.98 0.34 3.63 16 11 O -0.33 -12.45 9.38 -93.31 -0.88 -13.32 16 12 C 0.04 1.39 6.72 22.71 0.15 1.54 16 13 C -0.15 -4.04 9.14 22.53 0.21 -3.83 16 14 C -0.14 -3.09 10.10 22.37 0.23 -2.86 16 15 C 0.07 1.82 11.17 84.64 0.95 2.77 16 16 N -0.47 -15.50 7.87 -192.65 -1.52 -17.01 16 17 C 0.31 10.42 7.44 133.03 0.99 11.41 16 18 N -0.65 -20.14 5.38 -311.72 -1.68 -21.82 16 19 C 0.54 16.06 7.71 86.43 0.67 16.73 16 20 O -0.51 -17.99 14.48 -4.27 -0.06 -18.05 16 21 C -0.17 -3.94 9.56 23.64 0.23 -3.72 16 22 C -0.02 -0.35 9.46 23.86 0.23 -0.13 16 23 C 0.07 1.40 6.70 41.72 0.28 1.68 16 24 C 0.07 1.14 10.98 85.06 0.93 2.07 16 25 N -0.46 -7.39 10.49 -193.89 -2.03 -9.42 16 26 C 0.06 0.69 11.22 84.74 0.95 1.64 16 27 C 0.05 0.70 11.22 84.79 0.95 1.65 16 28 N -0.45 -8.94 9.51 -184.66 -1.76 -10.69 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 2.36 7.70 -2.39 -0.02 2.35 16 33 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 34 H 0.16 3.82 6.44 -2.91 -0.02 3.80 16 35 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.43 12.36 8.02 -92.71 -0.74 11.62 16 38 H 0.15 3.29 7.43 -2.91 -0.02 3.27 16 39 H 0.16 2.80 7.52 -2.91 -0.02 2.78 16 40 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 42 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -76.31 374.72 2.67 -73.65 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.33 Total: 21.03 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 7.95 Total: 5.93 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -6.70 Total: -113.35 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.94 Total: -31.38 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -76.31 2.67 -73.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491461618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.160 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds