Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99639 * 2 1 4 4 H 1.48504 * 109.46950 * 239.99547 * 3 2 1 5 5 H 1.48491 * 109.47531 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00327 * 3 2 1 7 7 C 1.38715 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99885 * 179.97438 * 7 2 1 9 9 O 1.34785 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.35563 * 117.00197 * 185.05668 * 9 7 2 11 11 C 1.39182 * 119.90004 * 354.44683 * 10 9 7 12 12 C 1.37596 * 120.10361 * 179.97438 * 11 10 9 13 13 C 1.40025 * 119.89844 * 0.02562 * 12 11 10 14 14 C 1.46960 * 120.10181 * 179.97438 * 13 12 11 15 15 C 1.35022 * 119.99938 * 179.97438 * 14 13 12 16 16 C 1.46256 * 119.99782 * 179.97438 * 15 14 13 17 17 O 1.21722 * 120.00134 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99715 * 180.02562 * 16 15 14 19 19 C 1.47078 * 120.94845 * 180.02562 * 18 16 15 20 20 C 1.53337 * 109.23840 * 116.44376 * 19 18 16 21 21 N 1.46216 * 109.23050 * 45.60286 * 20 19 18 22 22 C 1.34787 * 128.60441 * 161.81107 * 21 20 19 23 23 N 1.30821 * 107.12343 * 179.51688 * 22 21 20 24 24 N 1.29168 * 109.71941 * 0.26537 * 23 22 21 25 25 C 1.29725 * 109.40756 * 359.95965 * 24 23 22 26 26 C 1.47522 * 120.95285 * 0.02793 * 18 16 15 27 27 C 1.40029 * 119.79534 * 0.27918 * 13 12 11 28 28 C 1.37595 * 119.89930 * 359.41588 * 27 13 12 29 29 H 0.96994 * 119.99638 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.94682 * 359.97438 * 11 10 9 31 31 H 1.08005 * 120.04928 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.99922 * 0.02562 * 14 13 12 33 33 H 1.07997 * 119.99994 * 0.02562 * 15 14 13 34 34 H 1.08999 * 109.51106 * 356.51692 * 19 18 16 35 35 H 1.09001 * 109.51363 * 236.37301 * 19 18 16 36 36 H 1.09003 * 109.52021 * 165.54315 * 20 19 18 37 37 H 1.09004 * 109.51743 * 285.65713 * 20 19 18 38 38 H 1.08001 * 126.44328 * 359.50791 * 22 21 20 39 39 H 1.09002 * 109.95581 * 342.48546 * 26 18 16 40 40 H 1.08999 * 109.95650 * 103.76282 * 26 18 16 41 41 H 1.08003 * 120.04496 * 179.72804 * 27 13 12 42 42 H 1.07997 * 119.95334 * 180.28097 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3349 -2.3686 -0.0005 10 6 2.0692 -3.5032 0.1054 11 6 3.4592 -3.4339 0.0911 12 6 4.2086 -4.5828 0.1989 13 6 3.5707 -5.8232 0.3225 14 6 4.3667 -7.0532 0.4373 15 6 3.7495 -8.2481 0.5570 16 6 4.5418 -9.4722 0.6707 17 8 5.7575 -9.4138 0.6579 18 7 3.9256 -10.6650 0.7896 19 6 4.7017 -11.9090 0.9059 20 6 4.4277 -12.5496 2.2718 21 7 2.9890 -12.5322 2.5320 22 6 2.2860 -13.2634 3.4197 23 7 1.0329 -12.9044 3.3079 24 7 0.9195 -11.9959 2.3968 25 6 2.0882 -11.7402 1.8950 26 6 2.4536 -10.7603 0.8068 27 6 2.1720 -5.8886 0.3300 28 6 1.4308 -4.7339 0.2280 29 1 -0.4849 0.8400 0.0004 30 1 3.9503 -2.4769 -0.0047 31 1 5.2872 -4.5280 0.1881 32 1 5.4455 -7.0012 0.4268 33 1 2.6708 -8.3000 0.5679 34 1 5.7645 -11.6847 0.8157 35 1 4.4059 -12.5980 0.1148 36 1 4.7849 -13.5794 2.2693 37 1 4.9451 -11.9865 3.0485 38 1 2.6825 -14.0061 4.0961 39 1 2.0201 -9.7841 1.0243 40 1 2.0929 -11.1224 -0.1560 41 1 1.6758 -6.8436 0.4207 42 1 0.3520 -4.7829 0.2382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491548829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = 59.994940 kcal Electronic energy + Delta-G solvation = -27346.552969 eV Core-core repulsion = 23294.127768 eV Total energy + Delta-G solvation = -4052.425201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.29386 -41.11071 -40.75623 -38.56979 -37.84653 -35.50195 -34.75126 -34.01723 -32.40837 -31.97271 -31.28244 -29.62225 -27.70263 -27.44390 -25.80804 -24.20245 -23.68840 -23.43486 -22.17164 -21.19767 -20.09373 -19.37153 -18.96466 -18.63418 -18.19351 -17.69766 -16.89063 -16.55034 -16.44972 -16.38348 -15.96755 -15.79220 -15.62191 -15.43363 -15.11280 -14.84275 -14.64178 -14.35965 -14.14376 -13.91812 -13.67372 -13.54520 -13.31115 -13.08651 -12.89845 -12.67972 -12.59118 -12.47624 -12.22944 -12.14445 -11.50293 -11.21939 -11.17085 -11.12201 -11.06803 -10.59638 -10.40457 -10.00019 -9.89261 -8.70024 -8.52141 -6.18445 -0.29778 0.58886 0.78964 1.08562 1.32877 1.35803 1.46980 1.51769 1.76333 1.82902 2.15350 2.24448 2.85600 3.05610 3.17442 3.34970 3.37179 3.42964 3.74482 3.87462 3.94031 4.01559 4.08567 4.11902 4.25565 4.30475 4.32677 4.46481 4.53428 4.57258 4.65810 4.67959 4.77094 4.94175 5.00006 5.03760 5.10545 5.19427 5.29071 5.33828 5.56558 5.63814 5.79190 5.85927 5.97106 6.09399 6.11548 6.91944 7.00116 7.62383 7.69153 8.69638 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.001925 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.827511 B =14542.004927 C =15540.163677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.107 0.893 9 O -0.219 6.219 10 C 0.131 3.869 11 C -0.250 4.250 12 C -0.036 4.036 13 C -0.175 4.175 14 C 0.031 3.969 15 C -0.262 4.262 16 C 0.567 3.433 17 O -0.575 6.575 18 N -0.619 5.619 19 C 0.093 3.907 20 C 0.090 3.910 21 N -0.471 5.471 22 C 0.176 3.824 23 N -0.353 5.353 24 N -0.325 5.325 25 C 0.159 3.841 26 C 0.199 3.801 27 C -0.036 4.036 28 C -0.209 4.209 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.264 0.736 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -26.419 2.548 29.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.079 3.921 11 C -0.269 4.269 12 C -0.054 4.054 13 C -0.175 4.175 14 C 0.011 3.989 15 C -0.282 4.282 16 C 0.362 3.638 17 O -0.456 6.456 18 N -0.352 5.352 19 C -0.029 4.029 20 C -0.032 4.032 21 N -0.162 5.162 22 C -0.113 4.113 23 N -0.191 5.191 24 N -0.164 5.164 25 C -0.111 4.111 26 C 0.074 3.926 27 C -0.054 4.054 28 C -0.228 4.228 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.279 0.721 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.175 0.825 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.489 -26.162 2.771 28.708 hybrid contribution 1.113 0.964 -0.043 1.474 sum 12.603 -25.198 2.729 28.306 Atomic orbital electron populations 1.70148 1.08079 1.29184 1.47614 1.26634 0.96838 1.02853 0.95511 0.84642 0.77434 0.74130 0.80036 1.17989 1.19704 1.18128 1.21868 0.92744 0.81187 1.53458 0.87592 1.83887 1.36298 1.12783 1.79453 1.20206 0.91630 0.87965 0.92332 1.21214 0.92977 1.00262 1.12474 1.21335 1.00192 0.90579 0.93319 1.18779 0.93117 0.92953 1.12695 1.22218 0.99453 0.90326 0.86896 1.22779 1.01013 0.91334 1.13113 1.18332 0.86988 0.83841 0.74687 1.90793 1.15113 1.87001 1.52704 1.48050 1.06572 1.06810 1.73789 1.22103 0.99669 0.84894 0.96244 1.22714 0.75066 1.06354 0.99071 1.46367 1.10814 1.29831 1.29167 1.27155 0.88234 0.99590 0.96291 1.74508 1.17985 1.11451 1.15147 1.74064 1.20976 1.12864 1.08528 1.25215 0.86545 0.98778 1.00610 1.20477 0.79321 0.97996 0.94800 1.21279 0.92792 0.97377 0.93964 1.20422 1.00366 0.90262 1.11741 0.91592 0.85685 0.83477 0.85115 0.83436 0.86272 0.87838 0.83294 0.88585 0.72058 0.85493 0.85475 0.82481 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.40 13.67 21.62 0.30 -54.10 16 2 C -0.02 -1.07 5.49 84.85 0.47 -0.61 16 3 Si 1.02 41.23 29.55 68.60 2.03 43.26 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.42 -23.29 9.48 67.93 0.64 -22.64 16 8 H 0.11 5.37 5.18 -2.91 -0.02 5.35 16 9 O -0.22 -12.64 9.74 -20.23 -0.20 -12.83 16 10 C 0.13 6.16 6.66 22.72 0.15 6.31 16 11 C -0.25 -10.21 9.14 22.34 0.20 -10.00 16 12 C -0.04 -1.17 9.78 22.55 0.22 -0.95 16 13 C -0.17 -5.12 5.87 -20.13 -0.12 -5.24 16 14 C 0.03 0.74 9.45 23.82 0.23 0.96 16 15 C -0.26 -5.29 8.70 23.61 0.21 -5.09 16 16 C 0.57 11.47 7.64 86.33 0.66 12.13 16 17 O -0.57 -15.06 15.67 -4.42 -0.07 -15.13 16 18 N -0.62 -8.56 2.97 -826.15 -2.45 -11.01 16 19 C 0.09 0.73 6.43 86.38 0.56 1.29 16 20 C 0.09 0.43 7.18 86.55 0.62 1.05 16 21 N -0.47 -5.72 3.11 -519.22 -1.62 -7.33 16 22 C 0.18 2.31 12.81 180.25 2.31 4.62 16 23 N -0.35 -8.32 12.24 -60.26 -0.74 -9.06 16 24 N -0.32 -8.13 12.21 -50.17 -0.61 -8.74 16 25 C 0.16 2.80 7.88 138.18 1.09 3.89 16 26 C 0.20 2.54 6.63 85.51 0.57 3.10 16 27 C -0.04 -1.11 9.40 22.55 0.21 -0.89 16 28 C -0.21 -8.25 9.97 22.34 0.22 -8.02 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.13 5.16 5.62 -2.91 -0.02 5.14 16 31 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 32 H 0.13 3.05 7.52 -2.91 -0.02 3.03 16 33 H 0.15 2.39 4.04 -2.91 -0.01 2.37 16 34 H 0.12 1.08 7.01 -2.39 -0.02 1.07 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.26 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.13 1.56 5.67 -2.39 -0.01 1.55 16 40 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.16 3.47 6.16 -2.91 -0.02 3.45 16 42 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -82.27 359.26 5.96 -76.31 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.09 Total: 18.72 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 8.23 Total: -20.09 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -5.13 Total: -90.24 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.27 Total: -27.96 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -82.27 5.96 -76.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491548829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.307 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds