Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48504 * 109.47002 * 270.00252 * 3 2 1 5 5 H 1.48505 * 109.47089 * 29.99670 * 3 2 1 6 6 H 1.48499 * 109.47076 * 149.99993 * 3 2 1 7 7 C 1.37878 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99916 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99718 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00094 * 97.25324 * 10 9 7 12 12 C 1.50699 * 109.47594 * 270.00236 * 11 10 9 13 13 C 1.38225 * 119.61536 * 94.97234 * 12 11 10 14 14 C 1.38627 * 119.15819 * 179.79318 * 13 12 11 15 15 C 1.38675 * 118.42316 * 0.47163 * 14 13 12 16 16 C 1.38179 * 119.15901 * 359.51042 * 15 14 13 17 17 N 1.31849 * 119.61888 * 275.00308 * 12 11 10 18 18 C 1.34776 * 120.00271 * 277.26146 * 10 9 7 19 19 O 1.21491 * 120.00306 * 176.77014 * 18 10 9 20 20 C 1.48339 * 120.00030 * 356.76179 * 18 10 9 21 21 C 1.39300 * 119.57521 * 186.70128 * 20 18 10 22 22 C 1.38447 * 119.19292 * 179.79339 * 21 20 18 23 23 C 1.39871 * 118.35625 * 0.47593 * 22 21 20 24 24 C 1.48002 * 120.46423 * 179.77153 * 23 22 21 25 25 N 1.34774 * 120.00109 * 179.97438 * 24 23 22 26 26 O 1.21527 * 120.00236 * 359.97438 * 24 23 22 27 27 C 1.39729 * 119.07339 * 359.74467 * 23 22 21 28 28 N 1.31420 * 120.72077 * 0.02562 * 27 23 22 29 29 H 0.97006 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46827 * 60.00693 * 9 7 2 31 31 H 1.08994 * 109.47590 * 300.00104 * 9 7 2 32 32 H 1.08997 * 109.47252 * 149.99773 * 11 10 9 33 33 H 1.09000 * 109.46892 * 30.00508 * 11 10 9 34 34 H 1.08003 * 120.42570 * 0.02562 * 13 12 11 35 35 H 1.08001 * 120.79092 * 180.24016 * 14 13 12 36 36 H 1.07993 * 120.42233 * 179.78208 * 15 14 13 37 37 H 1.08004 * 119.61928 * 180.24450 * 16 15 14 38 38 H 1.08001 * 120.39992 * 0.02562 * 21 20 18 39 39 H 1.07997 * 120.82744 * 180.22684 * 22 21 20 40 40 H 0.97007 * 120.00263 * 0.02562 * 25 24 23 41 41 H 0.97004 * 120.00566 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.63952 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.3945 -3.2128 -1.2585 12 6 3.2010 -3.9012 -1.8690 13 6 2.4445 -3.2420 -2.8196 14 6 1.3511 -3.8858 -3.3780 15 6 1.0524 -5.1707 -2.9504 16 6 1.8548 -5.7663 -1.9961 17 7 2.8902 -5.1251 -1.4897 18 6 4.0858 -3.2596 1.1580 19 8 4.4347 -4.4233 1.1515 20 6 3.7546 -2.5919 2.4405 21 6 3.9796 -3.2602 3.6418 22 6 3.6717 -2.6279 4.8343 23 6 3.1337 -1.3378 4.7826 24 6 2.7827 -0.6206 6.0288 25 7 2.2654 0.6224 5.9681 26 8 2.9610 -1.1525 7.1068 27 6 2.9327 -0.7353 3.5380 28 7 3.2426 -1.3675 2.4282 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6797 0.8895 31 1 3.8746 -0.6808 -0.8904 32 1 5.1771 -3.9463 -1.0645 33 1 4.7690 -2.4557 -1.9475 34 1 2.7040 -2.2394 -3.1261 35 1 0.7441 -3.3969 -4.1257 36 1 0.2060 -5.7008 -3.3612 37 1 1.6313 -6.7682 -1.6606 38 1 4.3929 -4.2580 3.6430 39 1 3.8388 -3.1200 5.7810 40 1 2.1227 1.0469 5.1076 41 1 2.0357 1.0926 6.7848 42 1 2.5183 0.2607 3.4874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505207131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = 8.920534 kcal Electronic energy + Delta-G solvation = -29483.586235 eV Core-core repulsion = 25428.946282 eV Total energy + Delta-G solvation = -4054.639954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97876 -41.13117 -40.43564 -39.37678 -36.96471 -34.98653 -34.48898 -33.79855 -33.27502 -32.75401 -32.12049 -29.85925 -28.10569 -26.05869 -24.70606 -24.47997 -24.09181 -23.19578 -22.10162 -20.87007 -19.19669 -18.91877 -18.56666 -18.03717 -17.73363 -17.37807 -17.02089 -16.65104 -16.49108 -16.19696 -16.08093 -15.98919 -15.64552 -15.34427 -14.88987 -14.70001 -14.48950 -14.40728 -14.19568 -14.03143 -13.83639 -13.69346 -13.20595 -13.11918 -12.70274 -12.58235 -12.25228 -11.91284 -11.54113 -11.50896 -11.20095 -11.03452 -10.79907 -10.69678 -10.56827 -10.32962 -10.29954 -10.01834 -9.82677 -9.35580 -8.05846 -6.03999 -0.77881 0.19536 0.23248 0.48739 1.39341 1.47679 1.51872 1.62684 2.01512 2.18310 2.39235 2.51815 2.85131 3.01020 3.17432 3.31952 3.46967 3.61894 3.67219 3.80610 3.90217 3.95523 4.05476 4.08623 4.25882 4.32753 4.49007 4.58847 4.59835 4.78939 4.81655 4.88688 4.89669 4.92972 5.23641 5.28395 5.35298 5.47766 5.67470 5.79470 5.82364 5.88697 6.25396 6.33798 6.56721 6.75787 6.91726 7.15783 7.19511 7.22963 7.54816 9.11332 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.004521 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.394300 B = 6192.186053 C = 7714.569001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.026 3.974 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.233 1.233 7 C -0.470 4.470 8 H 0.008 0.992 9 C 0.203 3.797 10 N -0.570 5.570 11 C 0.163 3.837 12 C 0.098 3.902 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.171 4.171 16 C 0.071 3.929 17 N -0.496 5.496 18 C 0.558 3.442 19 O -0.558 6.558 20 C 0.088 3.912 21 C -0.121 4.121 22 C -0.024 4.024 23 C -0.176 4.176 24 C 0.576 3.424 25 N -0.826 5.826 26 O -0.574 6.574 27 C 0.122 3.878 28 N -0.423 5.423 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.415 0.585 41 H 0.418 0.582 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 1.004 1.027 6.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.170 4.170 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.156 1.156 7 C -0.509 4.509 8 H 0.027 0.973 9 C 0.082 3.918 10 N -0.299 5.299 11 C 0.040 3.960 12 C -0.040 4.040 13 C -0.167 4.167 14 C -0.113 4.113 15 C -0.191 4.191 16 C -0.086 4.086 17 N -0.206 5.206 18 C 0.345 3.655 19 O -0.437 6.437 20 C -0.050 4.050 21 C -0.142 4.142 22 C -0.050 4.050 23 C -0.182 4.182 24 C 0.360 3.640 25 N -0.391 5.391 26 O -0.455 6.455 27 C -0.039 4.039 28 N -0.133 5.133 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.247 0.753 41 H 0.251 0.749 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.765 0.048 1.393 6.907 hybrid contribution -1.155 1.055 -0.123 1.570 sum 5.610 1.104 1.271 5.857 Atomic orbital electron populations 1.70091 1.08279 1.27377 1.53787 1.25439 0.94920 1.01976 0.94715 0.86042 0.80462 0.79396 0.79021 1.20424 1.21150 1.15570 1.20952 0.90275 0.91761 1.47879 0.97341 1.20436 0.93884 0.78070 0.99434 1.47891 1.61474 1.15477 1.05036 1.20453 0.92991 0.97245 0.85276 1.21658 0.97949 0.90712 0.93689 1.22102 0.96365 1.00766 0.97490 1.21897 0.95693 0.94817 0.98898 1.22423 1.01403 0.96378 0.98880 1.23135 0.90912 1.00594 0.93955 1.67502 1.18329 1.09865 1.24898 1.18217 0.77879 0.85359 0.84022 1.90716 1.49673 1.16121 1.87173 1.21448 0.97296 0.92062 0.94163 1.22154 0.99284 1.01826 0.90959 1.21821 0.91607 0.92433 0.99173 1.21207 1.04915 0.97387 0.94674 1.17981 0.76409 0.82124 0.87453 1.43589 1.65086 1.16059 1.14334 1.90786 1.55809 1.68160 1.30712 1.23471 0.93767 1.00369 0.86267 1.68451 1.07448 1.07811 1.29594 0.93098 0.89444 0.94896 0.89276 0.86310 0.84277 0.82846 0.81988 0.81380 0.82353 0.81423 0.75316 0.74861 0.80448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.21 13.96 21.45 0.30 -53.91 16 2 C 0.03 1.32 5.47 84.65 0.46 1.78 16 3 Si 0.93 37.37 27.47 68.60 1.88 39.25 16 4 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.29 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.23 -8.29 6.54 99.48 0.65 -7.64 16 7 C -0.47 -23.78 8.51 25.60 0.22 -23.56 16 8 H 0.01 0.51 8.06 -2.91 -0.02 0.49 16 9 C 0.20 8.48 3.88 85.63 0.33 8.81 16 10 N -0.57 -23.17 2.46 -833.37 -2.05 -25.23 16 11 C 0.16 5.83 5.73 85.63 0.49 6.32 16 12 C 0.10 3.76 6.36 42.55 0.27 4.03 16 13 C -0.15 -5.15 9.72 22.36 0.22 -4.93 16 14 C -0.09 -2.70 10.18 22.47 0.23 -2.47 16 15 C -0.17 -4.98 10.11 22.36 0.23 -4.75 16 16 C 0.07 2.37 11.18 84.67 0.95 3.32 16 17 N -0.50 -19.85 10.27 -183.89 -1.89 -21.74 16 18 C 0.56 23.67 7.59 86.93 0.66 24.33 16 19 O -0.56 -25.19 15.94 -3.69 -0.06 -25.25 16 20 C 0.09 3.37 6.63 41.96 0.28 3.64 16 21 C -0.12 -3.88 9.62 22.58 0.22 -3.66 16 22 C -0.02 -0.67 9.71 22.72 0.22 -0.45 16 23 C -0.18 -4.95 5.90 -19.93 -0.12 -5.07 16 24 C 0.58 14.86 8.06 86.83 0.70 15.56 16 25 N -0.83 -14.35 8.83 -175.50 -1.55 -15.90 16 26 O -0.57 -18.31 17.25 -3.80 -0.07 -18.38 16 27 C 0.12 3.74 10.71 85.12 0.91 4.66 16 28 N -0.42 -16.02 4.95 -183.90 -0.91 -16.93 16 29 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 30 H 0.09 3.59 4.30 -3.04 -0.01 3.58 16 31 H 0.03 1.28 7.24 -2.39 -0.02 1.26 16 32 H 0.09 3.17 7.47 -2.39 -0.02 3.16 16 33 H 0.12 3.39 7.75 -2.39 -0.02 3.37 16 34 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.16 4.71 7.64 -2.91 -0.02 4.68 16 39 H 0.17 4.03 7.73 -2.91 -0.02 4.01 16 40 H 0.41 5.77 6.89 -92.70 -0.64 5.13 16 41 H 0.42 5.54 8.93 -92.71 -0.83 4.72 16 42 H 0.18 4.42 6.41 -2.91 -0.02 4.41 16 Total: -1.00 -76.53 364.18 1.50 -75.03 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.42 Total: 35.51 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 6.26 Total: 27.55 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -6.10 Total: -133.71 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.12 Total: -43.63 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.88 Total: 39.25 kcal Total: -76.53 1.50 -75.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505207131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.949 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds