Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86795 * 119.99548 * 2 1 4 4 H 1.48502 * 109.47532 * 264.92417 * 3 2 1 5 5 H 1.48507 * 109.47487 * 24.92453 * 3 2 1 6 6 H 1.48505 * 109.47157 * 144.92342 * 3 2 1 7 7 C 1.40051 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99829 * 350.98128 * 7 2 1 9 9 C 1.46371 * 119.99952 * 170.97287 * 7 2 1 10 10 O 1.21689 * 120.00145 * 338.92437 * 9 7 2 11 11 N 1.34782 * 119.99776 * 158.91983 * 9 7 2 12 12 C 1.46957 * 120.59310 * 184.46299 * 11 9 7 13 13 C 1.53374 * 108.63786 * 235.25026 * 12 11 9 14 14 N 1.46966 * 108.62820 * 310.57857 * 13 12 11 15 15 C 1.34784 * 120.59015 * 235.19846 * 14 13 12 16 16 O 1.21498 * 120.00069 * 11.58277 * 15 14 13 17 17 C 1.48280 * 119.99826 * 191.57853 * 15 14 13 18 18 C 1.40366 * 119.18630 * 187.48347 * 17 15 14 19 19 C 1.36556 * 119.82837 * 179.72047 * 18 17 15 20 20 C 1.40550 * 118.05865 * 0.25349 * 19 18 17 21 21 C 1.40519 * 122.21699 * 180.02562 * 20 19 18 22 22 C 1.36261 * 118.68874 * 179.97438 * 21 20 19 23 23 N 1.32591 * 121.79961 * 0.02875 * 22 21 20 24 24 C 1.31114 * 122.87604 * 359.97438 * 23 22 21 25 25 C 1.40853 * 119.95920 * 359.97438 * 24 23 22 26 26 N 1.31892 * 119.18869 * 7.73448 * 17 15 14 27 27 C 1.46961 * 118.81614 * 55.47685 * 14 13 12 28 28 C 1.46965 * 120.59201 * 4.48826 * 11 9 7 29 29 H 0.96997 * 120.00566 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.61182 * 115.50240 * 12 11 9 31 31 H 1.09008 * 109.61102 * 354.99504 * 12 11 9 32 32 H 1.08991 * 109.61187 * 190.83153 * 13 12 11 33 33 H 1.09000 * 109.60680 * 70.31403 * 13 12 11 34 34 H 1.08004 * 120.08471 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.97301 * 180.22659 * 19 18 17 36 36 H 1.08000 * 120.65547 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.09948 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01585 * 180.02562 * 24 23 22 39 39 H 1.09005 * 109.60748 * 64.26498 * 27 14 13 40 40 H 1.09004 * 109.61014 * 184.77578 * 27 14 13 41 41 H 1.09002 * 109.60664 * 244.49594 * 28 11 9 42 42 H 1.08993 * 109.61303 * 5.00007 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.5953 1.9846 -1.3946 5 1 1.3884 2.6813 0.5900 6 1 3.4804 1.4737 0.8046 7 6 2.0070 -1.2128 0.0005 8 1 1.4771 -2.1423 0.1476 9 6 3.4572 -1.2206 -0.1983 10 8 4.0031 -0.2735 -0.7329 11 7 4.1877 -2.2769 0.2106 12 6 5.6535 -2.2576 0.1067 13 6 6.1042 -3.4848 -0.6954 14 7 5.4491 -4.6764 -0.1380 15 6 6.1796 -5.7330 0.2702 16 8 7.3856 -5.6325 0.3780 17 6 5.5114 -7.0181 0.5875 18 6 6.2621 -8.0567 1.1604 19 6 5.6587 -9.2437 1.4633 20 6 4.2890 -9.3806 1.1792 21 6 3.5811 -10.5627 1.4551 22 6 2.2541 -10.6167 1.1505 23 7 1.6203 -9.5883 0.6037 24 6 2.2155 -8.4554 0.3187 25 6 3.5873 -8.2927 0.5941 26 7 4.2276 -7.1589 0.3200 27 6 3.9830 -4.6979 -0.0392 28 6 3.5327 -3.4686 0.7680 29 1 -0.4851 0.8400 -0.0004 30 1 6.0915 -2.2916 1.1042 31 1 5.9722 -1.3492 -0.4046 32 1 7.1861 -3.5934 -0.6208 33 1 5.8171 -3.3645 -1.7400 34 1 7.3132 -7.9160 1.3649 35 1 6.2177 -10.0539 1.9078 36 1 4.0788 -11.4113 1.9006 37 1 1.7035 -11.5217 1.3602 38 1 1.6541 -7.6471 -0.1262 39 1 3.5485 -4.6621 -1.0383 40 1 3.6638 -5.6080 0.4688 41 1 3.8196 -3.5888 1.8127 42 1 2.4508 -3.3599 0.6935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515167210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 26.882904 kcal Electronic energy + Delta-G solvation = -28987.761044 eV Core-core repulsion = 24933.899997 eV Total energy + Delta-G solvation = -4053.861047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77535 -40.13147 -38.54871 -37.89411 -36.27177 -34.41254 -33.18307 -32.86861 -32.00048 -31.33145 -30.57324 -27.75859 -26.63453 -25.57419 -24.71089 -23.45086 -23.04241 -22.25559 -20.67345 -19.16504 -18.63650 -18.00199 -17.64600 -16.75743 -16.34966 -15.97575 -15.84348 -15.58450 -15.26662 -14.85953 -14.82713 -14.73086 -14.42526 -14.27818 -14.09347 -13.73500 -13.44588 -13.22104 -12.85385 -12.53315 -12.48185 -12.23797 -12.11684 -11.79409 -11.42681 -11.22251 -11.09069 -11.04656 -10.77536 -10.57822 -10.41490 -9.95242 -9.74242 -9.54508 -9.36679 -9.03204 -8.88124 -8.79139 -7.98001 -7.52030 -6.64330 -4.84769 -0.38562 0.13662 1.33232 2.11464 2.81240 2.99348 3.41441 3.45449 3.52150 3.66202 3.66733 3.93291 4.04718 4.11932 4.15651 4.22074 4.26700 4.33305 4.50117 4.68082 4.79429 5.05844 5.19702 5.23851 5.29695 5.31652 5.34776 5.42073 5.53992 5.66448 5.70446 5.79417 5.83148 5.90903 6.06383 6.17819 6.25582 6.35179 6.45687 6.62385 7.01506 7.05696 7.39569 7.51371 7.56244 7.84032 7.99875 8.27371 8.68156 9.08745 9.97598 10.36950 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003130 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.050496 B = 8942.584440 C =10591.549200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.105 3.895 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.317 1.317 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.557 3.443 10 O -0.615 6.615 11 N -0.633 5.633 12 C 0.106 3.894 13 C 0.096 3.904 14 N -0.581 5.581 15 C 0.565 3.435 16 O -0.537 6.537 17 C 0.123 3.877 18 C -0.106 4.106 19 C -0.065 4.065 20 C -0.063 4.063 21 C -0.150 4.150 22 C 0.084 3.916 23 N -0.474 5.474 24 C 0.179 3.821 25 C 0.059 3.941 26 N -0.411 5.411 27 C 0.062 3.938 28 C 0.105 3.895 29 H 0.282 0.718 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.180 0.820 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.050 0.950 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -22.821 4.178 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.113 4.113 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.248 1.248 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.110 0.890 9 C 0.366 3.634 10 O -0.506 6.506 11 N -0.368 5.368 12 C -0.019 4.019 13 C -0.027 4.027 14 N -0.311 5.311 15 C 0.350 3.650 16 O -0.414 6.414 17 C -0.030 4.030 18 C -0.127 4.127 19 C -0.091 4.091 20 C -0.070 4.070 21 C -0.170 4.170 22 C -0.058 4.058 23 N -0.183 5.183 24 C 0.006 3.994 25 C -0.066 4.066 26 N -0.124 5.124 27 C -0.061 4.061 28 C -0.019 4.019 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.197 0.803 39 H 0.092 0.908 40 H 0.158 0.842 41 H 0.068 0.932 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.971 -21.824 3.446 23.168 hybrid contribution 1.561 -0.025 0.574 1.664 sum 8.532 -21.849 4.019 23.798 Atomic orbital electron populations 1.69546 1.07829 1.29949 1.38506 1.25684 0.94690 1.01738 0.89218 0.85382 0.77834 0.77986 0.79729 1.20097 1.24808 1.19379 1.20718 0.88861 0.95828 1.51688 0.88990 1.18399 0.88197 0.79729 0.77030 1.90254 1.73848 1.36419 1.50070 1.47781 1.04343 1.17841 1.66822 1.21609 0.83212 0.97825 0.99252 1.22197 0.98575 0.84184 0.97706 1.47964 1.08479 1.15110 1.59588 1.17880 0.86228 0.82745 0.78111 1.90765 1.13636 1.83377 1.53660 1.21589 0.89705 0.95322 0.96416 1.21875 1.02426 0.92246 0.96187 1.21432 0.92775 0.97880 0.96970 1.19075 0.95048 0.95122 0.97772 1.21907 0.95877 0.97487 1.01777 1.22380 0.92062 0.97104 0.94300 1.67558 1.39568 1.00101 1.11062 1.23361 0.88911 0.94936 0.92234 1.20118 0.96572 0.90124 0.99800 1.68003 1.08414 1.20925 1.15097 1.23538 0.77787 1.01998 1.02804 1.22058 1.00400 0.83971 0.95520 0.90786 0.92802 0.88318 0.88675 0.90738 0.82663 0.83137 0.83930 0.82325 0.80318 0.90828 0.84240 0.93213 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.10 13.92 55.55 0.77 -22.32 16 2 C 0.10 2.93 5.52 -17.37 -0.10 2.83 16 3 Si 0.96 25.00 25.85 -169.99 -4.39 20.60 16 4 H -0.27 -7.41 7.11 56.52 0.40 -7.00 16 5 H -0.32 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -7.30 6.87 56.52 0.39 -6.92 16 7 C -0.54 -14.62 9.29 -35.63 -0.33 -14.95 16 8 H 0.09 2.46 6.07 -52.49 -0.32 2.14 16 9 C 0.56 14.50 7.14 -12.99 -0.09 14.41 16 10 O -0.61 -17.51 12.30 5.20 0.06 -17.45 16 11 N -0.63 -13.39 2.95 -173.88 -0.51 -13.90 16 12 C 0.11 1.93 6.60 -3.60 -0.02 1.91 16 13 C 0.10 1.51 6.60 -3.59 -0.02 1.49 16 14 N -0.58 -8.82 2.94 -173.17 -0.51 -9.33 16 15 C 0.56 8.26 7.63 -12.13 -0.09 8.16 16 16 O -0.54 -8.82 15.76 5.37 0.08 -8.73 16 17 C 0.12 1.50 6.58 -82.91 -0.55 0.95 16 18 C -0.11 -1.00 9.54 -39.39 -0.38 -1.37 16 19 C -0.06 -0.48 9.93 -39.32 -0.39 -0.87 16 20 C -0.06 -0.55 5.75 -106.70 -0.61 -1.16 16 21 C -0.15 -0.99 9.88 -39.43 -0.39 -1.38 16 22 C 0.08 0.62 11.07 -17.94 -0.20 0.43 16 23 N -0.47 -4.70 10.28 -13.05 -0.13 -4.84 16 24 C 0.18 1.77 11.26 -16.87 -0.19 1.58 16 25 C 0.06 0.62 6.62 -84.88 -0.56 0.05 16 26 N -0.41 -4.84 6.11 -7.51 -0.05 -4.89 16 27 C 0.06 0.91 6.02 -3.37 -0.02 0.89 16 28 C 0.11 1.85 6.50 -3.37 -0.02 1.83 16 29 H 0.28 7.26 8.29 -40.82 -0.34 6.92 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.93 6.99 -51.92 -0.36 1.57 16 32 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.16 1.31 7.62 -52.48 -0.40 0.91 16 35 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.14 1.85 4.13 -80.87 -0.33 1.52 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.11 2.05 5.40 -51.93 -0.28 1.77 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -34.29 347.43 -8.00 -42.28 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.59 Total: -1.46 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -3.97 Total: 14.79 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.43 Total: -55.28 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: 0.15 Total: -26.18 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.39 Total: 20.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.29 -8.00 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515167210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.166 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds