Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86795 * 119.99548 * 2 1 4 4 H 1.48502 * 109.47532 * 264.92417 * 3 2 1 5 5 H 1.48507 * 109.47487 * 24.92453 * 3 2 1 6 6 H 1.48505 * 109.47157 * 144.92342 * 3 2 1 7 7 C 1.40051 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99829 * 350.98128 * 7 2 1 9 9 C 1.46371 * 119.99952 * 170.97287 * 7 2 1 10 10 O 1.21689 * 120.00145 * 338.92437 * 9 7 2 11 11 N 1.34782 * 119.99776 * 158.91983 * 9 7 2 12 12 C 1.46957 * 120.59310 * 184.46299 * 11 9 7 13 13 C 1.53374 * 108.63786 * 235.25026 * 12 11 9 14 14 N 1.46966 * 108.62820 * 310.57857 * 13 12 11 15 15 C 1.34784 * 120.59015 * 235.19846 * 14 13 12 16 16 O 1.21498 * 120.00069 * 11.58277 * 15 14 13 17 17 C 1.48280 * 119.99826 * 191.57853 * 15 14 13 18 18 C 1.40366 * 119.18630 * 187.48347 * 17 15 14 19 19 C 1.36556 * 119.82837 * 179.72047 * 18 17 15 20 20 C 1.40550 * 118.05865 * 0.25349 * 19 18 17 21 21 C 1.40519 * 122.21699 * 180.02562 * 20 19 18 22 22 C 1.36261 * 118.68874 * 179.97438 * 21 20 19 23 23 N 1.32591 * 121.79961 * 0.02875 * 22 21 20 24 24 C 1.31114 * 122.87604 * 359.97438 * 23 22 21 25 25 C 1.40853 * 119.95920 * 359.97438 * 24 23 22 26 26 N 1.31892 * 119.18869 * 7.73448 * 17 15 14 27 27 C 1.46961 * 118.81614 * 55.47685 * 14 13 12 28 28 C 1.46965 * 120.59201 * 4.48826 * 11 9 7 29 29 H 0.96997 * 120.00566 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.61182 * 115.50240 * 12 11 9 31 31 H 1.09008 * 109.61102 * 354.99504 * 12 11 9 32 32 H 1.08991 * 109.61187 * 190.83153 * 13 12 11 33 33 H 1.09000 * 109.60680 * 70.31403 * 13 12 11 34 34 H 1.08004 * 120.08471 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.97301 * 180.22659 * 19 18 17 36 36 H 1.08000 * 120.65547 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.09948 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01585 * 180.02562 * 24 23 22 39 39 H 1.09005 * 109.60748 * 64.26498 * 27 14 13 40 40 H 1.09004 * 109.61014 * 184.77578 * 27 14 13 41 41 H 1.09002 * 109.60664 * 244.49594 * 28 11 9 42 42 H 1.08993 * 109.61303 * 5.00007 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.5953 1.9846 -1.3946 5 1 1.3884 2.6813 0.5900 6 1 3.4804 1.4737 0.8046 7 6 2.0070 -1.2128 0.0005 8 1 1.4771 -2.1423 0.1476 9 6 3.4572 -1.2206 -0.1983 10 8 4.0031 -0.2735 -0.7329 11 7 4.1877 -2.2769 0.2106 12 6 5.6535 -2.2576 0.1067 13 6 6.1042 -3.4848 -0.6954 14 7 5.4491 -4.6764 -0.1380 15 6 6.1796 -5.7330 0.2702 16 8 7.3856 -5.6325 0.3780 17 6 5.5114 -7.0181 0.5875 18 6 6.2621 -8.0567 1.1604 19 6 5.6587 -9.2437 1.4633 20 6 4.2890 -9.3806 1.1792 21 6 3.5811 -10.5627 1.4551 22 6 2.2541 -10.6167 1.1505 23 7 1.6203 -9.5883 0.6037 24 6 2.2155 -8.4554 0.3187 25 6 3.5873 -8.2927 0.5941 26 7 4.2276 -7.1589 0.3200 27 6 3.9830 -4.6979 -0.0392 28 6 3.5327 -3.4686 0.7680 29 1 -0.4851 0.8400 -0.0004 30 1 6.0915 -2.2916 1.1042 31 1 5.9722 -1.3492 -0.4046 32 1 7.1861 -3.5934 -0.6208 33 1 5.8171 -3.3645 -1.7400 34 1 7.3132 -7.9160 1.3649 35 1 6.2177 -10.0539 1.9078 36 1 4.0788 -11.4113 1.9006 37 1 1.7035 -11.5217 1.3602 38 1 1.6541 -7.6471 -0.1262 39 1 3.5485 -4.6621 -1.0383 40 1 3.6638 -5.6080 0.4688 41 1 3.8196 -3.5888 1.8127 42 1 2.4508 -3.3599 0.6935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515167210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 3.430166 kcal Electronic energy + Delta-G solvation = -28988.778031 eV Core-core repulsion = 24933.899997 eV Total energy + Delta-G solvation = -4054.878034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53532 -41.26456 -40.09385 -38.83722 -37.84455 -35.29857 -34.99494 -34.56833 -32.88831 -32.40328 -31.41283 -29.40857 -28.24573 -26.58455 -25.51268 -24.71630 -23.94205 -23.46405 -22.04104 -20.59806 -19.47399 -19.15558 -18.61865 -18.30141 -17.80137 -17.23530 -17.06048 -16.84358 -16.50290 -16.13316 -15.95681 -15.85054 -15.61667 -15.39391 -15.16084 -14.74917 -14.53943 -14.43957 -14.28822 -14.00583 -13.94974 -13.62031 -13.36220 -13.10108 -12.98036 -12.79448 -12.51331 -12.47544 -12.30318 -11.90370 -11.70267 -11.52382 -11.19922 -10.68165 -10.49046 -10.36156 -10.12454 -10.02487 -9.51143 -9.16855 -8.78628 -6.98569 -1.09037 -0.54682 0.66280 1.27609 1.31304 1.34710 1.54992 1.68700 2.05594 2.12553 2.29378 2.53519 2.76741 2.96143 3.27591 3.30131 3.36745 3.46532 3.62360 3.69853 3.88407 3.92075 4.03512 4.19350 4.23068 4.29883 4.43578 4.51534 4.55634 4.63959 4.65794 4.73038 4.77414 4.82038 4.95124 5.05892 5.07666 5.11057 5.28922 5.40669 5.55954 5.67953 5.92960 6.13618 6.22439 6.33398 6.61990 6.84368 6.89634 7.08722 7.93604 8.27016 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003130 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.050496 B = 8942.584440 C =10591.549200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.074 3.926 3 Si 1.000 3.000 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.554 3.446 10 O -0.645 6.645 11 N -0.633 5.633 12 C 0.106 3.894 13 C 0.106 3.894 14 N -0.588 5.588 15 C 0.567 3.433 16 O -0.557 6.557 17 C 0.106 3.894 18 C -0.117 4.117 19 C -0.039 4.039 20 C -0.074 4.074 21 C -0.131 4.131 22 C 0.071 3.929 23 N -0.492 5.492 24 C 0.162 3.838 25 C 0.043 3.957 26 N -0.430 5.430 27 C 0.077 3.923 28 C 0.103 3.897 29 H 0.292 0.708 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.196 0.804 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.065 0.935 40 H 0.162 0.838 41 H 0.062 0.938 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -26.139 5.496 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.142 4.142 3 Si 0.832 3.168 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.587 4.587 8 H 0.108 0.892 9 C 0.362 3.638 10 O -0.538 6.538 11 N -0.366 5.366 12 C -0.018 4.018 13 C -0.017 4.017 14 N -0.319 5.319 15 C 0.354 3.646 16 O -0.435 6.435 17 C -0.047 4.047 18 C -0.139 4.139 19 C -0.064 4.064 20 C -0.081 4.081 21 C -0.151 4.151 22 C -0.070 4.070 23 N -0.201 5.201 24 C -0.012 4.012 25 C -0.082 4.082 26 N -0.144 5.144 27 C -0.046 4.046 28 C -0.020 4.020 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.213 0.787 36 H 0.202 0.798 37 H 0.205 0.795 38 H 0.196 0.804 39 H 0.084 0.916 40 H 0.178 0.822 41 H 0.081 0.919 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.855 -25.176 4.783 26.803 hybrid contribution 1.286 0.783 0.202 1.519 sum 9.141 -24.393 4.986 26.522 Atomic orbital electron populations 1.69544 1.08114 1.30984 1.39227 1.26134 0.95234 1.03345 0.89478 0.84810 0.76586 0.77052 0.78346 1.21791 1.22208 1.21538 1.20944 0.89905 0.95899 1.51988 0.89172 1.18334 0.88181 0.80475 0.76837 1.90225 1.74350 1.37903 1.51339 1.47738 1.05621 1.17620 1.65594 1.21724 0.81301 0.98580 1.00207 1.22012 0.99243 0.83429 0.97009 1.47994 1.08455 1.15311 1.60106 1.18256 0.86029 0.83294 0.77012 1.90742 1.14491 1.83897 1.54380 1.21332 0.90240 0.94829 0.98281 1.21975 1.02739 0.92412 0.96775 1.21887 0.92088 0.97871 0.94577 1.19400 0.95881 0.95321 0.97526 1.22323 0.95348 0.97588 0.99849 1.22947 0.93003 0.97322 0.93772 1.67559 1.40495 1.00629 1.11454 1.23397 0.89078 0.95422 0.93273 1.20236 0.96815 0.90547 1.00627 1.67661 1.08545 1.22290 1.15855 1.23463 0.77750 1.01278 1.02127 1.22214 0.99575 0.83665 0.96578 0.89806 0.91636 0.89840 0.87416 0.91059 0.81851 0.78725 0.79783 0.79481 0.80364 0.91638 0.82240 0.91949 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.47 13.92 21.84 0.30 -47.16 16 2 C 0.07 4.18 5.52 85.31 0.47 4.65 16 3 Si 1.00 52.04 25.85 68.60 1.77 53.81 16 4 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.29 -15.86 6.87 99.48 0.68 -15.18 16 7 C -0.55 -30.74 9.29 24.83 0.23 -30.51 16 8 H 0.09 4.95 6.07 -2.91 -0.02 4.93 16 9 C 0.55 29.47 7.14 86.36 0.62 30.08 16 10 O -0.64 -37.55 12.30 -4.31 -0.05 -37.60 16 11 N -0.63 -27.14 2.95 -822.25 -2.42 -29.56 16 12 C 0.11 3.89 6.60 86.42 0.57 4.46 16 13 C 0.11 3.32 6.60 86.42 0.57 3.89 16 14 N -0.59 -17.67 2.94 -820.07 -2.41 -20.08 16 15 C 0.57 16.15 7.63 86.91 0.66 16.82 16 16 O -0.56 -17.78 15.76 -3.71 -0.06 -17.83 16 17 C 0.11 2.45 6.58 42.33 0.28 2.72 16 18 C -0.12 -1.92 9.54 22.39 0.21 -1.71 16 19 C -0.04 -0.41 9.93 22.44 0.22 -0.18 16 20 C -0.07 -1.05 5.75 -21.21 -0.12 -1.17 16 21 C -0.13 -1.15 9.88 22.37 0.22 -0.93 16 22 C 0.07 0.84 11.07 84.12 0.93 1.77 16 23 N -0.49 -9.04 10.28 -195.21 -2.01 -11.05 16 24 C 0.16 3.11 11.26 85.44 0.96 4.07 16 25 C 0.04 0.84 6.62 40.54 0.27 1.10 16 26 N -0.43 -9.79 6.11 -177.68 -1.09 -10.88 16 27 C 0.08 2.28 6.02 86.56 0.52 2.80 16 28 C 0.10 3.66 6.50 86.56 0.56 4.22 16 29 H 0.29 14.94 8.29 -92.71 -0.77 14.17 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 3.34 6.99 -2.38 -0.02 3.32 16 32 H 0.11 3.12 7.02 -2.39 -0.02 3.10 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.16 2.36 7.62 -2.91 -0.02 2.34 16 35 H 0.20 0.28 8.06 -2.91 -0.02 0.25 16 36 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 39 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.16 4.22 4.13 -59.54 -0.25 3.97 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 3.73 5.40 -2.39 -0.01 3.72 16 Total: -1.00 -75.18 347.43 2.04 -73.14 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.82 Total: 5.12 kcal Atomic # 6 Polarization: 34.91 SS G_CDS: 7.18 Total: 42.09 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -7.62 Total: -118.73 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.11 Total: -55.43 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.77 Total: 53.81 kcal Total: -75.18 2.04 -73.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515167210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.570 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds