Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48495 * 109.47237 * 84.42691 * 3 2 1 5 5 H 1.48502 * 109.47060 * 204.42734 * 3 2 1 6 6 H 1.48499 * 109.47160 * 324.42780 * 3 2 1 7 7 C 1.38810 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00196 * 21.95132 * 7 2 1 9 9 N 1.36935 * 120.00053 * 201.94619 * 7 2 1 10 10 C 1.46500 * 120.00008 * 37.05887 * 9 7 2 11 11 C 1.50705 * 109.46710 * 89.99791 * 10 9 7 12 12 C 1.34515 * 125.78517 * 90.00683 * 11 10 9 13 13 C 1.41387 * 106.84075 * 179.97438 * 12 11 10 14 14 C 1.34519 * 106.83837 * 359.97438 * 13 12 11 15 15 S 1.76198 * 125.78533 * 180.02562 * 14 13 12 16 16 O 1.42107 * 106.39962 * 203.53465 * 15 14 13 17 17 O 1.42094 * 106.40542 * 336.45835 * 15 14 13 18 18 N 1.65602 * 107.21724 * 90.00057 * 15 14 13 19 19 C 1.47023 * 125.64683 * 269.68984 * 18 15 14 20 20 C 1.54321 * 107.27518 * 180.97095 * 19 18 15 21 21 C 1.55159 * 102.86522 * 22.52137 * 20 19 18 22 22 C 1.47425 * 125.64872 * 89.99850 * 18 15 14 23 23 O 1.34300 * 125.79135 * 269.69135 * 11 10 9 24 24 C 1.46503 * 120.00210 * 217.06263 * 9 7 2 25 25 C 1.52998 * 117.49518 * 14.15015 * 24 9 7 26 26 C 1.52996 * 117.49738 * 305.48932 * 24 9 7 27 27 H 0.96996 * 120.00427 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47734 * 210.00099 * 10 9 7 29 29 H 1.09005 * 109.46827 * 330.00832 * 10 9 7 30 30 H 1.08001 * 126.58102 * 0.03091 * 12 11 10 31 31 H 1.07997 * 126.58119 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.88175 * 300.50965 * 19 18 15 33 33 H 1.08997 * 109.88492 * 61.67975 * 19 18 15 34 34 H 1.08999 * 110.91819 * 264.10930 * 20 19 18 35 35 H 1.09000 * 110.58918 * 140.78403 * 20 19 18 36 36 H 1.08998 * 111.00627 * 206.23181 * 21 20 19 37 37 H 1.09003 * 110.99796 * 82.37554 * 21 20 19 38 38 H 1.09008 * 110.36670 * 274.66733 * 22 18 15 39 39 H 1.09003 * 110.36983 * 36.88249 * 22 18 15 40 40 H 1.09002 * 115.54956 * 159.81850 * 24 9 7 41 41 H 1.08993 * 117.50604 * 359.97438 * 25 24 9 42 42 H 1.09003 * 117.49485 * 145.02050 * 25 24 9 43 43 H 1.08994 * 117.49611 * 214.97581 * 26 24 9 44 44 H 1.08994 * 117.50069 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3799 2.1144 1.3934 5 1 3.6017 1.4091 -0.5790 6 1 1.5114 2.6158 -0.8145 7 6 2.0103 -1.2021 -0.0005 8 1 1.5291 -2.1034 -0.3506 9 7 3.3052 -1.2453 0.4427 10 6 3.7187 -0.4175 1.5785 11 6 3.5203 -1.1868 2.8591 12 6 4.4305 -1.9839 3.4470 13 6 3.8281 -2.4996 4.6176 14 6 2.5861 -1.9863 4.6753 15 16 1.3982 -2.3025 5.9377 16 8 0.1239 -2.0494 5.3619 17 8 1.7541 -3.5485 6.5206 18 7 1.6159 -1.1569 7.1135 19 6 2.5029 -1.2832 8.2791 20 6 2.3614 0.0125 9.1053 21 6 0.9752 0.5532 8.6653 22 6 0.9474 0.1560 7.1682 23 8 2.4069 -1.1881 3.6101 24 6 4.2772 -2.1192 -0.2191 25 6 3.8924 -2.6999 -1.5812 26 6 3.9229 -3.6022 -0.3450 27 1 -0.4850 0.8400 0.0004 28 1 4.7710 -0.1541 1.4722 29 1 3.1173 0.4912 1.6037 30 1 5.4299 -2.1897 3.0932 31 1 4.2790 -3.1753 5.3293 32 1 2.2052 -2.1425 8.8801 33 1 3.5351 -1.3990 7.9487 34 1 3.1496 0.7223 8.8540 35 1 2.3675 -0.2105 10.1722 36 1 0.9224 1.6354 8.7835 37 1 0.1721 0.0620 9.2147 38 1 1.4953 0.8858 6.5720 39 1 -0.0805 0.0734 6.8149 40 1 5.3247 -1.8638 -0.0585 41 1 2.9160 -2.4323 -1.9849 42 1 4.6868 -2.8271 -2.3167 43 1 4.7373 -4.3225 -0.2677 44 1 2.9669 -3.9278 0.0648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519193851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 9.083065 kcal Electronic energy + Delta-G solvation = -28435.522425 eV Core-core repulsion = 24484.040720 eV Total energy + Delta-G solvation = -3951.481705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.11847 -38.50617 -37.41208 -37.19227 -35.80354 -33.94824 -32.72303 -31.76457 -31.13722 -29.53949 -29.19201 -25.90101 -24.07464 -22.79297 -21.76616 -21.53657 -21.39953 -20.76246 -19.91046 -19.09870 -18.28780 -17.52791 -16.87747 -16.35564 -15.87925 -15.64834 -15.39713 -15.11684 -14.64655 -14.01442 -13.90349 -13.87859 -13.51582 -13.42749 -12.96843 -12.84805 -12.60444 -12.54491 -12.39514 -12.11943 -12.06561 -12.01162 -11.72537 -11.56255 -11.36847 -11.31047 -11.03635 -10.96637 -10.95733 -10.73831 -10.24182 -10.11382 -9.72484 -9.70864 -9.53652 -9.22294 -8.63299 -8.46372 -7.00779 -6.14081 -3.59929 0.29012 1.55270 2.73602 2.96916 3.16601 3.34287 3.36780 3.43244 3.78185 4.20294 4.33562 4.34997 4.65141 4.66617 4.71506 4.78054 5.08035 5.10998 5.17294 5.22978 5.26415 5.33956 5.50004 5.61138 5.63155 5.64739 5.67831 5.70951 5.81725 5.84643 5.88926 5.89759 5.95184 6.01291 6.09701 6.20101 6.27083 6.34688 6.36801 6.74397 6.81740 7.04140 7.40010 7.82877 8.23583 8.74807 9.50234 9.82636 10.99629 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004004 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.846249 B = 6990.726612 C = 7778.995133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.047 3.953 3 Si 0.869 3.131 4 H -0.281 1.281 5 H -0.263 1.263 6 H -0.294 1.294 7 C -0.285 4.285 8 H 0.085 0.915 9 N -0.554 5.554 10 C 0.193 3.807 11 C 0.067 3.933 12 C -0.251 4.251 13 C -0.083 4.083 14 C -0.608 4.608 15 S 2.740 3.260 16 O -0.933 6.933 17 O -0.942 6.942 18 N -1.010 6.010 19 C 0.117 3.883 20 C -0.128 4.128 21 C -0.128 4.128 22 C 0.112 3.888 23 O -0.104 6.104 24 C 0.117 3.883 25 C -0.186 4.186 26 C -0.217 4.217 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 1.133 16.152 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.156 4.156 3 Si 0.698 3.302 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.413 4.413 8 H 0.103 0.897 9 N -0.271 5.271 10 C 0.066 3.934 11 C 0.007 3.993 12 C -0.271 4.271 13 C -0.105 4.105 14 C -0.740 4.740 15 S 2.827 3.173 16 O -0.923 6.923 17 O -0.933 6.933 18 N -0.849 5.849 19 C -0.008 4.008 20 C -0.167 4.167 21 C -0.167 4.167 22 C -0.013 4.013 23 O 0.004 5.996 24 C 0.009 3.991 25 C -0.224 4.224 26 C -0.257 4.257 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.851 0.702 15.946 17.788 hybrid contribution 1.243 0.869 -0.353 1.557 sum 9.095 1.571 15.593 18.120 Atomic orbital electron populations 1.69865 1.05992 1.27228 1.48529 1.25423 0.95067 0.97842 0.97297 0.87047 0.81126 0.84747 0.77270 1.20932 1.18784 1.22097 1.18671 0.85951 0.94954 1.41693 0.89719 1.43708 1.08268 1.47966 1.27156 1.20303 0.99777 0.93325 0.80000 1.25148 0.83172 0.97945 0.93027 1.21644 1.02137 1.05171 0.98172 1.21765 0.92325 0.97993 0.98399 1.35390 1.16726 1.12675 1.09257 1.00836 0.72838 0.72191 0.71424 1.93621 1.36864 1.84724 1.77086 1.93601 1.84938 1.38421 1.76335 1.58740 1.56893 1.32253 1.37036 1.21767 0.93539 0.99129 0.86381 1.22635 0.97897 0.96334 0.99866 1.22769 0.97485 1.01542 0.94938 1.22143 0.98330 0.83222 0.97604 1.84323 1.36640 1.51097 1.27553 1.21126 0.91919 0.89773 0.96294 1.23154 1.03484 1.04750 0.91061 1.23346 1.02698 0.95660 1.04021 0.92167 0.89653 0.90607 0.83170 0.82707 0.90743 0.91561 0.90498 0.90058 0.89782 0.90416 0.91144 0.89352 0.88644 0.87626 0.90222 0.90460 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 2 C 0.05 1.33 5.31 -17.43 -0.09 1.23 16 3 Si 0.87 21.00 24.98 -169.99 -4.25 16.76 16 4 H -0.28 -6.58 6.68 56.52 0.38 -6.20 16 5 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.28 -7.80 8.53 -15.06 -0.13 -7.93 16 8 H 0.09 2.54 7.32 -52.49 -0.38 2.16 16 9 N -0.55 -12.81 2.43 -167.02 -0.41 -13.21 16 10 C 0.19 4.06 5.07 -5.19 -0.03 4.03 16 11 C 0.07 1.40 6.90 -35.62 -0.25 1.15 16 12 C -0.25 -4.39 10.81 -39.70 -0.43 -4.82 16 13 C -0.08 -1.40 10.63 -39.70 -0.42 -1.83 16 14 C -0.61 -11.54 7.36 29.42 0.22 -11.32 16 15 S 2.74 46.29 6.09 -107.50 -0.65 45.63 16 16 O -0.93 -19.35 17.34 -57.21 -0.99 -20.34 16 17 O -0.94 -16.39 17.41 -57.17 -1.00 -17.39 16 18 N -1.01 -12.84 3.70 -111.41 -0.41 -13.25 16 19 C 0.12 1.11 6.98 -3.07 -0.02 1.09 16 20 C -0.13 -0.89 6.95 -24.90 -0.17 -1.07 16 21 C -0.13 -0.98 7.08 -24.58 -0.17 -1.15 16 22 C 0.11 1.25 7.11 -2.53 -0.02 1.23 16 23 O -0.10 -2.37 10.65 5.71 0.06 -2.31 16 24 C 0.12 2.27 6.61 -67.93 -0.45 1.82 16 25 C -0.19 -3.46 9.81 -26.69 -0.26 -3.72 16 26 C -0.22 -4.03 10.08 -26.69 -0.27 -4.30 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.09 1.45 8.04 -51.93 -0.42 1.04 16 29 H 0.08 1.73 3.17 -51.93 -0.16 1.57 16 30 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 39 H 0.09 1.04 7.78 -51.93 -0.40 0.64 16 40 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 41 H 0.11 2.24 6.94 -51.93 -0.36 1.88 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.91 8.00 -51.93 -0.42 1.49 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -35.12 373.77 -10.11 -45.23 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.38 Total: 4.60 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -2.49 Total: -25.58 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.04 Total: -52.23 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.93 Total: -40.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.25 Total: 16.76 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.65 Total: 45.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.12 -10.11 -45.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519193851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.311 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds