Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47279 * 270.00139 * 3 2 1 5 5 H 1.48497 * 109.47466 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.46812 * 150.00439 * 3 2 1 7 7 C 1.37881 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00175 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99380 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46869 * 179.97438 * 9 7 2 11 11 C 1.46491 * 120.00186 * 270.00055 * 10 9 7 12 12 C 1.50694 * 109.47335 * 269.99931 * 11 10 9 13 13 C 1.34518 * 125.79055 * 90.00229 * 12 11 10 14 14 C 1.41377 * 106.84203 * 180.02562 * 13 12 11 15 15 C 1.34514 * 106.84137 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42219 * 359.73412 * 15 14 13 17 17 C 1.34779 * 119.99768 * 89.99859 * 10 9 7 18 18 O 1.21588 * 119.99913 * 179.97438 * 17 10 9 19 19 N 1.34779 * 119.99747 * 0.02562 * 17 10 9 20 20 C 1.40103 * 119.99658 * 179.97438 * 19 17 10 21 21 C 1.39145 * 125.58111 * 0.02562 * 20 19 17 22 22 C 1.38874 * 107.52166 * 179.73577 * 21 20 19 23 23 C 1.40828 * 132.86436 * 179.97438 * 22 21 20 24 24 C 1.36077 * 119.22884 * 179.97438 * 23 22 21 25 25 C 1.40452 * 119.58009 * 0.08628 * 24 23 22 26 26 C 1.34963 * 120.43560 * 359.92683 * 25 24 23 27 27 N 1.36487 * 120.68132 * 0.03875 * 26 25 24 28 28 N 1.31857 * 125.58163 * 179.69127 * 20 19 17 29 29 H 0.96994 * 120.00345 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47225 * 60.00233 * 9 7 2 31 31 H 1.08996 * 109.47370 * 299.99313 * 9 7 2 32 32 H 1.09003 * 109.46963 * 30.00010 * 11 10 9 33 33 H 1.09003 * 109.47572 * 149.99775 * 11 10 9 34 34 H 1.07997 * 126.57946 * 359.96194 * 13 12 11 35 35 H 1.08000 * 126.58156 * 179.97438 * 14 13 12 36 36 H 1.08005 * 125.78940 * 180.02562 * 15 14 13 37 37 H 0.96992 * 120.00298 * 0.02562 * 19 17 10 38 38 H 1.07997 * 126.23651 * 359.75422 * 21 20 19 39 39 H 1.07995 * 120.38127 * 0.02608 * 23 22 21 40 40 H 1.07998 * 120.20457 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.78200 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.65980 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2446 -3.2655 1.2677 12 6 5.6680 -3.0287 1.7021 13 6 6.0963 -2.0140 2.4745 14 6 7.4918 -2.1783 2.6300 15 6 7.8329 -3.2839 1.9438 16 8 6.7233 -3.7982 1.3890 17 6 4.2241 -3.2108 -1.1682 18 8 4.6299 -4.3570 -1.1681 19 7 3.9994 -2.5755 -2.3354 20 6 4.2330 -3.2360 -3.5487 21 6 4.6942 -4.5418 -3.6839 22 6 4.7844 -4.8147 -5.0426 23 6 5.1846 -5.9546 -5.7662 24 6 5.1650 -5.9190 -7.1264 25 6 4.7490 -4.7493 -7.7834 26 6 4.3688 -3.6655 -7.0747 27 7 4.3823 -3.6859 -5.7100 28 7 4.0458 -2.7241 -4.7494 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6800 -0.8911 32 1 3.5641 -2.8813 2.0275 33 1 4.0776 -4.3348 1.1377 34 1 5.4904 -1.2246 2.8944 35 1 8.1566 -1.5389 3.1919 36 1 8.8293 -3.6917 1.8579 37 1 3.6768 -1.6608 -2.3355 38 1 4.9373 -5.2195 -2.8790 39 1 5.5027 -6.8469 -5.2477 40 1 5.4683 -6.7843 -7.6970 41 1 4.7325 -4.7173 -8.8628 42 1 4.0508 -2.7728 -7.5927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579989100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = 120.449724 kcal Electronic energy + Delta-G solvation = -28762.294739 eV Core-core repulsion = 24712.491054 eV Total energy + Delta-G solvation = -4049.803685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26945 -41.83666 -39.83939 -37.24265 -35.49046 -34.23569 -32.82993 -32.62628 -32.54977 -30.67007 -29.73688 -28.20472 -27.93705 -25.67215 -23.62663 -22.85246 -22.36480 -21.57172 -21.40950 -20.28385 -19.26956 -18.08320 -17.32089 -17.11187 -16.87387 -16.76122 -16.12103 -15.79899 -15.61251 -15.23523 -14.94168 -14.65095 -14.31148 -14.15042 -13.97266 -13.58861 -13.27918 -12.78217 -12.60425 -12.54134 -12.42770 -12.21140 -12.04052 -11.88388 -11.78116 -11.53071 -11.00975 -10.80475 -10.64344 -10.50253 -10.39729 -10.01087 -9.76739 -9.66419 -9.51893 -8.81047 -8.46137 -8.30614 -8.00766 -7.31458 -6.29117 -4.33309 0.83575 1.19453 1.86832 2.16227 2.77923 2.81642 3.13120 3.20007 3.21604 3.24572 3.30806 3.47180 3.88119 4.19555 4.30571 4.40537 4.68534 4.86227 4.97518 4.99770 5.00864 5.20789 5.25315 5.27076 5.44660 5.59671 5.74304 5.93192 5.96327 5.98501 6.01267 6.13648 6.20084 6.21109 6.31014 6.33967 6.48790 6.55701 6.72330 6.88211 7.02997 7.16884 7.28853 7.31378 7.43582 7.77176 8.18339 8.39970 8.76697 8.94783 9.28655 10.83028 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.003983 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.582490 B = 7028.206330 C = 9504.023813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.867 3.133 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.208 3.792 10 N -0.596 5.596 11 C 0.214 3.786 12 C -0.018 4.018 13 C -0.204 4.204 14 C -0.219 4.219 15 C -0.049 4.049 16 O -0.164 6.164 17 C 0.722 3.278 18 O -0.580 6.580 19 N -0.639 5.639 20 C 0.360 3.640 21 C -0.275 4.275 22 C 0.102 3.898 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.182 4.182 26 C 0.123 3.877 27 N -0.272 5.272 28 N -0.348 5.348 29 H 0.268 0.732 30 H 0.043 0.957 31 H 0.022 0.978 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.197 0.803 37 H 0.422 0.578 38 H 0.183 0.817 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.066 -7.681 -7.339 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.100 0.900 9 C 0.087 3.913 10 N -0.329 5.329 11 C 0.090 3.910 12 C -0.070 4.070 13 C -0.224 4.224 14 C -0.238 4.238 15 C -0.117 4.117 16 O -0.059 6.059 17 C 0.423 3.577 18 O -0.457 6.457 19 N -0.290 5.290 20 C 0.111 3.889 21 C -0.306 4.306 22 C -0.016 4.016 23 C -0.132 4.132 24 C -0.112 4.112 25 C -0.204 4.204 26 C -0.004 4.004 27 N -0.040 5.040 28 N -0.182 5.182 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.213 0.787 37 H 0.262 0.738 38 H 0.200 0.800 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.723 -7.469 -7.898 16.734 hybrid contribution 0.455 1.271 0.525 1.448 sum 13.178 -6.198 -7.373 16.323 Atomic orbital electron populations 1.69878 1.06230 1.27374 1.48598 1.24863 0.94728 0.98849 0.93983 0.86984 0.80516 0.84030 0.79127 1.19729 1.20658 1.18724 1.21368 0.88672 0.95309 1.53452 0.89962 1.19849 0.96093 0.77571 0.97767 1.47077 1.67035 1.16147 1.02677 1.19655 0.85886 0.99683 0.85747 1.23272 0.90294 0.93000 1.00391 1.21675 0.95228 1.01077 1.04397 1.21788 0.96041 1.00240 1.05709 1.23983 0.90623 0.97137 0.99994 1.84121 1.15300 1.47043 1.59403 1.15518 0.78148 0.83935 0.80049 1.90777 1.52783 1.16362 1.85825 1.41932 1.67953 1.18140 1.01002 1.18677 0.93404 0.91219 0.85552 1.21854 1.17169 0.97591 0.93949 1.19674 1.00576 0.88776 0.92569 1.20581 1.02031 0.96792 0.93810 1.21051 0.97976 0.98128 0.94059 1.20686 1.06221 0.92892 1.00628 1.21407 0.99018 1.00852 0.79124 1.45747 1.43119 1.10239 1.04921 1.77937 1.35011 1.10512 0.94714 0.92190 0.93903 0.96003 0.86334 0.88482 0.83410 0.83879 0.78668 0.73791 0.80024 0.83764 0.84600 0.83262 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 7 C -0.55 -13.99 9.94 -34.44 -0.34 -14.33 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.21 4.46 3.99 -5.19 -0.02 4.44 16 10 N -0.60 -12.00 2.44 -182.19 -0.44 -12.45 16 11 C 0.21 3.75 5.93 -5.20 -0.03 3.72 16 12 C -0.02 -0.30 6.90 -35.63 -0.25 -0.54 16 13 C -0.20 -3.16 10.81 -39.70 -0.43 -3.58 16 14 C -0.22 -2.98 10.91 -39.70 -0.43 -3.41 16 15 C -0.05 -0.66 12.09 29.42 0.36 -0.31 16 16 O -0.16 -2.79 10.65 5.70 0.06 -2.73 16 17 C 0.72 15.29 8.25 -86.91 -0.72 14.57 16 18 O -0.58 -12.77 13.00 5.29 0.07 -12.71 16 19 N -0.64 -13.16 5.31 -15.71 -0.08 -13.24 16 20 C 0.36 7.24 8.05 -154.39 -1.24 6.00 16 21 C -0.28 -5.16 9.71 -39.01 -0.38 -5.54 16 22 C 0.10 1.62 6.81 -84.27 -0.57 1.04 16 23 C -0.11 -1.31 10.11 -39.38 -0.40 -1.71 16 24 C -0.09 -0.80 10.07 -39.52 -0.40 -1.20 16 25 C -0.18 -1.59 9.98 -39.91 -0.40 -1.99 16 26 C 0.12 1.41 11.19 -16.64 -0.19 1.23 16 27 N -0.27 -4.39 3.89 -10.71 -0.04 -4.43 16 28 N -0.35 -6.69 12.68 31.27 0.40 -6.29 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.04 0.89 7.13 -51.93 -0.37 0.52 16 31 H 0.02 0.47 5.79 -51.93 -0.30 0.16 16 32 H 0.12 1.90 8.07 -51.93 -0.42 1.49 16 33 H 0.10 1.69 7.42 -51.93 -0.39 1.30 16 34 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.42 8.62 6.55 -40.82 -0.27 8.36 16 38 H 0.18 3.54 5.84 -52.49 -0.31 3.24 16 39 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -33.06 363.94 -8.59 -41.65 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.60 Total: 14.05 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -5.54 Total: 0.41 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.60 Total: -60.85 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.13 Total: -15.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.06 -8.59 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579989100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.099 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds