Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47279 * 270.00139 * 3 2 1 5 5 H 1.48497 * 109.47466 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.46812 * 150.00439 * 3 2 1 7 7 C 1.37881 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00175 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99380 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.46869 * 179.97438 * 9 7 2 11 11 C 1.46491 * 120.00186 * 270.00055 * 10 9 7 12 12 C 1.50694 * 109.47335 * 269.99931 * 11 10 9 13 13 C 1.34518 * 125.79055 * 90.00229 * 12 11 10 14 14 C 1.41377 * 106.84203 * 180.02562 * 13 12 11 15 15 C 1.34514 * 106.84137 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42219 * 359.73412 * 15 14 13 17 17 C 1.34779 * 119.99768 * 89.99859 * 10 9 7 18 18 O 1.21588 * 119.99913 * 179.97438 * 17 10 9 19 19 N 1.34779 * 119.99747 * 0.02562 * 17 10 9 20 20 C 1.40103 * 119.99658 * 179.97438 * 19 17 10 21 21 C 1.39145 * 125.58111 * 0.02562 * 20 19 17 22 22 C 1.38874 * 107.52166 * 179.73577 * 21 20 19 23 23 C 1.40828 * 132.86436 * 179.97438 * 22 21 20 24 24 C 1.36077 * 119.22884 * 179.97438 * 23 22 21 25 25 C 1.40452 * 119.58009 * 0.08628 * 24 23 22 26 26 C 1.34963 * 120.43560 * 359.92683 * 25 24 23 27 27 N 1.36487 * 120.68132 * 0.03875 * 26 25 24 28 28 N 1.31857 * 125.58163 * 179.69127 * 20 19 17 29 29 H 0.96994 * 120.00345 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47225 * 60.00233 * 9 7 2 31 31 H 1.08996 * 109.47370 * 299.99313 * 9 7 2 32 32 H 1.09003 * 109.46963 * 30.00010 * 11 10 9 33 33 H 1.09003 * 109.47572 * 149.99775 * 11 10 9 34 34 H 1.07997 * 126.57946 * 359.96194 * 13 12 11 35 35 H 1.08000 * 126.58156 * 179.97438 * 14 13 12 36 36 H 1.08005 * 125.78940 * 180.02562 * 15 14 13 37 37 H 0.96992 * 120.00298 * 0.02562 * 19 17 10 38 38 H 1.07997 * 126.23651 * 359.75422 * 21 20 19 39 39 H 1.07995 * 120.38127 * 0.02608 * 23 22 21 40 40 H 1.07998 * 120.20457 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.78200 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.65980 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2446 -3.2655 1.2677 12 6 5.6680 -3.0287 1.7021 13 6 6.0963 -2.0140 2.4745 14 6 7.4918 -2.1783 2.6300 15 6 7.8329 -3.2839 1.9438 16 8 6.7233 -3.7982 1.3890 17 6 4.2241 -3.2108 -1.1682 18 8 4.6299 -4.3570 -1.1681 19 7 3.9994 -2.5755 -2.3354 20 6 4.2330 -3.2360 -3.5487 21 6 4.6942 -4.5418 -3.6839 22 6 4.7844 -4.8147 -5.0426 23 6 5.1846 -5.9546 -5.7662 24 6 5.1650 -5.9190 -7.1264 25 6 4.7490 -4.7493 -7.7834 26 6 4.3688 -3.6655 -7.0747 27 7 4.3823 -3.6859 -5.7100 28 7 4.0458 -2.7241 -4.7494 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6800 -0.8911 32 1 3.5641 -2.8813 2.0275 33 1 4.0776 -4.3348 1.1377 34 1 5.4904 -1.2246 2.8944 35 1 8.1566 -1.5389 3.1919 36 1 8.8293 -3.6917 1.8579 37 1 3.6768 -1.6608 -2.3355 38 1 4.9373 -5.2195 -2.8790 39 1 5.5027 -6.8469 -5.2477 40 1 5.4683 -6.7843 -7.6970 41 1 4.7325 -4.7173 -8.8628 42 1 4.0508 -2.7728 -7.5927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579989100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 100.299900 kcal Electronic energy + Delta-G solvation = -28763.168501 eV Core-core repulsion = 24712.491054 eV Total energy + Delta-G solvation = -4050.677447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.45092 -43.03356 -41.38412 -38.38906 -37.09335 -35.67146 -34.68826 -33.87744 -33.63874 -31.98434 -31.00333 -29.82030 -29.17081 -27.01241 -24.91300 -24.38583 -23.52928 -22.91191 -22.58552 -21.50059 -20.77813 -19.49035 -19.19020 -18.28966 -18.20205 -18.08789 -17.33205 -16.99518 -16.89155 -16.46281 -16.27398 -16.06548 -15.84251 -15.46078 -15.19203 -15.12346 -14.51959 -14.46807 -14.07984 -13.69954 -13.65611 -13.56176 -13.32551 -13.10801 -13.01780 -12.69752 -12.58912 -12.48473 -12.14252 -11.78154 -11.74915 -11.73275 -11.16378 -11.15463 -10.83369 -10.81242 -9.92985 -9.60173 -9.40834 -8.48774 -8.33714 -6.43035 -0.08252 0.11935 0.62271 0.98100 1.37643 1.39218 1.40581 1.48127 1.65554 1.92390 2.09871 2.30472 2.36527 2.52807 2.80374 2.99579 3.36151 3.77334 3.82645 3.96905 4.06685 4.17236 4.18252 4.24121 4.33661 4.46540 4.53774 4.56624 4.61137 4.73152 4.88190 4.94161 4.99155 5.03692 5.18146 5.20443 5.27721 5.32325 5.34997 5.55787 5.65302 5.70902 5.74181 5.98302 6.15175 6.27715 6.44265 6.63457 6.81930 7.21602 7.34139 8.82268 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.003983 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.582490 B = 7028.206330 C = 9504.023813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.235 1.235 7 C -0.545 4.545 8 H 0.035 0.965 9 C 0.219 3.781 10 N -0.598 5.598 11 C 0.213 3.787 12 C -0.047 4.047 13 C -0.201 4.201 14 C -0.223 4.223 15 C -0.044 4.044 16 O -0.191 6.191 17 C 0.715 3.285 18 O -0.595 6.595 19 N -0.643 5.643 20 C 0.333 3.667 21 C -0.321 4.321 22 C 0.106 3.894 23 C -0.136 4.136 24 C -0.059 4.059 25 C -0.147 4.147 26 C 0.085 3.915 27 N -0.272 5.272 28 N -0.384 5.384 29 H 0.270 0.730 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.236 0.764 37 H 0.418 0.582 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.186 0.814 41 H 0.202 0.798 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 -7.797 -9.871 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.158 1.158 7 C -0.584 4.584 8 H 0.053 0.947 9 C 0.097 3.903 10 N -0.331 5.331 11 C 0.090 3.910 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.242 4.242 15 C -0.112 4.112 16 O -0.087 6.087 17 C 0.417 3.583 18 O -0.474 6.474 19 N -0.293 5.293 20 C 0.086 3.914 21 C -0.352 4.352 22 C -0.013 4.013 23 C -0.155 4.155 24 C -0.082 4.082 25 C -0.169 4.169 26 C -0.040 4.040 27 N -0.040 5.040 28 N -0.219 5.219 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.191 0.809 36 H 0.252 0.748 37 H 0.257 0.743 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.203 0.797 41 H 0.219 0.781 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.725 -7.594 -10.429 20.340 hybrid contribution -0.418 1.054 0.988 1.504 sum 15.307 -6.540 -9.441 19.136 Atomic orbital electron populations 1.70037 1.08351 1.28482 1.50682 1.25737 0.95414 1.02883 0.93438 0.85887 0.80090 0.78686 0.79502 1.19301 1.20650 1.15814 1.21459 0.90782 0.93516 1.52634 0.94707 1.19649 0.93246 0.78675 0.98700 1.47139 1.66872 1.15806 1.03293 1.19695 0.87450 0.98992 0.84849 1.23017 0.89949 0.94411 1.02398 1.21949 0.96523 1.00378 1.03268 1.22154 0.95431 1.00695 1.05940 1.24868 0.91041 0.96857 0.98432 1.84097 1.16286 1.47916 1.60370 1.15691 0.78248 0.83945 0.80449 1.90756 1.53594 1.16947 1.86105 1.41874 1.68118 1.17913 1.01444 1.18850 0.94961 0.91979 0.85563 1.21648 1.20890 0.97378 0.95270 1.20030 0.99482 0.89961 0.91852 1.20968 1.03237 0.96067 0.95262 1.21731 0.94060 0.99499 0.92949 1.21452 1.01486 0.91044 1.02875 1.22264 1.00866 1.03458 0.77417 1.46000 1.42270 1.09580 1.06122 1.77763 1.36998 1.12280 0.94890 0.92130 0.92157 0.95099 0.85455 0.89406 0.82486 0.80850 0.74793 0.74304 0.81991 0.81909 0.79674 0.78144 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.71 13.96 21.45 0.30 -55.41 16 2 C 0.03 1.36 5.47 84.66 0.46 1.83 16 3 Si 0.94 40.05 27.47 68.60 1.88 41.94 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 7 C -0.55 -29.11 9.94 25.60 0.25 -28.86 16 8 H 0.03 2.14 8.06 -2.92 -0.02 2.12 16 9 C 0.22 9.60 3.99 85.63 0.34 9.94 16 10 N -0.60 -25.41 2.44 -848.58 -2.07 -27.48 16 11 C 0.21 7.90 5.93 85.63 0.51 8.40 16 12 C -0.05 -1.60 6.90 24.83 0.17 -1.43 16 13 C -0.20 -6.02 10.81 22.19 0.24 -5.78 16 14 C -0.22 -5.58 10.91 22.19 0.24 -5.33 16 15 C -0.04 -1.13 12.09 66.97 0.81 -0.32 16 16 O -0.19 -6.55 10.65 -2.51 -0.03 -6.58 16 17 C 0.72 32.59 8.25 179.05 1.48 34.06 16 18 O -0.59 -28.43 13.00 -3.99 -0.05 -28.48 16 19 N -0.64 -28.62 5.31 -321.87 -1.71 -30.33 16 20 C 0.33 14.44 8.05 132.85 1.07 15.51 16 21 C -0.32 -13.01 9.71 22.64 0.22 -12.79 16 22 C 0.11 3.43 6.81 39.10 0.27 3.70 16 23 C -0.14 -2.85 10.11 22.40 0.23 -2.62 16 24 C -0.06 -0.74 10.07 22.31 0.22 -0.52 16 25 C -0.15 -1.76 9.98 22.06 0.22 -1.54 16 26 C 0.08 1.74 11.19 83.22 0.93 2.67 16 27 N -0.27 -8.77 3.89 -187.80 -0.73 -9.51 16 28 N -0.38 -15.58 12.68 -54.97 -0.70 -16.28 16 29 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 31 H 0.03 1.32 5.79 -2.39 -0.01 1.31 16 32 H 0.13 4.33 8.07 -2.39 -0.02 4.31 16 33 H 0.09 3.34 7.42 -2.39 -0.02 3.32 16 34 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.42 18.38 6.55 -92.71 -0.61 17.77 16 38 H 0.16 7.00 5.84 -2.91 -0.02 6.98 16 39 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 42 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -80.21 363.94 4.98 -75.24 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.41 Total: 39.98 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.66 Total: 16.91 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -4.91 Total: -139.01 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.08 Total: -35.06 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.94 kcal Total: -80.21 4.98 -75.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579989100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.539 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds