Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47411 * 274.96408 * 3 2 1 5 5 H 1.48494 * 109.47139 * 34.96774 * 3 2 1 6 6 H 1.48501 * 109.46939 * 154.96470 * 3 2 1 7 7 C 1.39931 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 196.79236 * 7 2 1 9 9 C 1.41414 * 119.99802 * 16.79450 * 7 2 1 10 10 C 1.40786 * 120.20784 * 25.17099 * 9 7 2 11 11 C 1.37654 * 119.89482 * 180.02562 * 10 9 7 12 12 C 1.38506 * 120.32896 * 0.02562 * 11 10 9 13 13 C 1.39297 * 120.42601 * 359.97438 * 12 11 10 14 14 N 1.39755 * 119.95509 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99828 * 145.77120 * 14 13 12 16 16 O 1.21394 * 120.00153 * 354.88931 * 15 14 13 17 17 C 1.49234 * 119.99712 * 174.89531 * 15 14 13 18 18 O 1.21406 * 120.00216 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99712 * 179.97438 * 17 15 14 20 20 C 1.40486 * 119.99842 * 180.27279 * 19 17 15 21 21 C 1.35847 * 126.11767 * 359.74901 * 20 19 17 22 22 N 1.35225 * 107.64772 * 179.97438 * 21 20 19 23 23 H 0.96997 * 125.99497 * 179.97438 * 22 21 20 24 24 N 1.40057 * 108.00788 * 0.02562 * 22 21 20 25 25 C 1.30823 * 108.36601 * 359.71190 * 24 22 21 26 26 C 1.50701 * 125.89699 * 180.29319 * 25 24 22 27 27 C 1.53003 * 117.50000 * 8.79740 * 26 25 24 28 28 C 1.52997 * 60.00224 * 252.51015 * 27 26 25 29 29 C 1.38343 * 120.09283 * 0.27615 * 13 12 11 30 30 H 0.96993 * 120.00519 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.04988 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.83042 * 179.97438 * 11 10 9 33 33 H 1.08010 * 119.79073 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99605 * 325.77516 * 14 13 12 35 35 H 0.97006 * 120.00001 * 359.97438 * 19 17 15 36 36 H 1.08007 * 126.17423 * 0.02562 * 21 20 19 37 37 H 1.09001 * 115.55232 * 154.50583 * 26 25 24 38 38 H 1.09006 * 117.49544 * 0.02562 * 27 26 25 39 39 H 1.09001 * 117.49671 * 145.01627 * 27 26 25 40 40 H 1.08995 * 117.49871 * 252.51269 * 28 27 26 41 41 H 1.09001 * 117.51656 * 107.47814 * 28 27 26 42 42 H 1.07994 * 120.16143 * 179.72667 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4961 2.6200 0.8024 6 1 3.5883 1.4122 0.5925 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2319 0.2696 9 6 1.3462 -2.4102 -0.3549 10 6 0.2109 -2.3732 -1.1867 11 6 -0.4286 -3.5436 -1.5272 12 6 0.0388 -4.7589 -1.0551 13 6 1.1609 -4.8113 -0.2314 14 7 1.6238 -6.0429 0.2398 15 6 2.9453 -6.2459 0.4097 16 8 3.7393 -5.3941 0.0667 17 6 3.4325 -7.5180 1.0193 18 8 2.6384 -8.3697 1.3627 19 7 4.7540 -7.7212 1.1887 20 6 5.2130 -8.9210 1.7573 21 6 4.4389 -9.9530 2.1829 22 7 5.2622 -10.9128 2.6619 23 1 4.9880 -11.7656 3.0338 24 7 6.5804 -10.4588 2.5279 25 6 6.5536 -9.2703 1.9818 26 6 7.7547 -8.4215 1.6534 27 6 9.1350 -9.0673 1.7906 28 6 8.6748 -8.0222 2.8088 29 6 1.8141 -3.6453 0.1261 30 1 -0.4850 0.8399 -0.0004 31 1 -0.1576 -1.4279 -1.5569 32 1 -1.2998 -3.5139 -2.1649 33 1 -0.4695 -5.6720 -1.3281 34 1 0.9939 -6.7516 0.4445 35 1 5.3885 -7.0407 0.9139 36 1 3.3604 -9.9989 2.1448 37 1 7.6143 -7.6993 0.8491 38 1 9.1742 -10.1063 2.1180 39 1 9.9029 -8.7701 1.0763 40 1 9.1399 -7.0374 2.7644 41 1 8.4111 -8.3731 3.8065 42 1 2.6815 -3.6843 0.7682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583034635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = 61.087638 kcal Electronic energy + Delta-G solvation = -27672.863014 eV Core-core repulsion = 23620.485196 eV Total energy + Delta-G solvation = -4052.377818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83803 -40.48723 -38.76549 -37.33065 -37.17580 -35.33691 -34.37936 -33.06930 -31.31649 -29.90212 -29.51499 -28.41145 -25.41576 -24.91333 -24.52207 -22.64887 -22.11564 -21.10128 -20.60147 -20.02757 -19.47650 -19.03623 -18.02585 -17.25329 -16.61581 -16.01395 -15.84075 -15.53052 -15.40517 -15.02192 -14.99505 -14.79345 -14.61982 -14.02889 -13.84434 -13.47070 -13.08198 -12.93881 -12.27684 -12.23610 -11.79874 -11.76871 -11.52730 -11.40990 -11.31077 -11.25158 -11.17439 -11.10169 -10.93854 -10.62051 -10.49876 -10.15205 -9.73282 -9.51685 -9.48514 -9.14420 -9.08490 -8.06112 -7.52654 -7.04053 -6.76984 -4.39320 1.24937 1.58238 2.18966 2.37763 2.69867 2.75502 2.92744 3.07708 3.12380 3.17697 3.49638 3.66786 3.75194 3.93330 4.17303 4.38105 4.58069 4.60414 4.65333 4.77375 4.94392 5.27882 5.38848 5.40254 5.54420 5.63937 5.74913 5.81653 5.89046 6.17515 6.32145 6.37512 6.53597 6.76903 6.94766 6.96834 6.99386 7.01564 7.18832 7.32801 7.40972 7.60921 7.69404 7.86603 7.99883 8.04013 8.11051 8.39207 8.61103 8.87187 8.91006 10.16962 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.002427 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.186756 B =11532.771423 C =13136.619097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.167 4.167 11 C -0.092 4.092 12 C -0.254 4.254 13 C 0.144 3.856 14 N -0.630 5.630 15 C 0.502 3.498 16 O -0.496 6.496 17 C 0.510 3.490 18 O -0.519 6.519 19 N -0.608 5.608 20 C -0.005 4.005 21 C 0.052 3.948 22 N -0.472 5.472 23 H 0.445 0.555 24 N -0.281 5.281 25 C 0.105 3.895 26 C -0.092 4.092 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.208 4.208 30 H 0.281 0.719 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.411 0.589 35 H 0.425 0.575 36 H 0.205 0.795 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 -16.074 3.898 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.186 4.186 11 C -0.111 4.111 12 C -0.275 4.275 13 C 0.052 3.948 14 N -0.275 5.275 15 C 0.282 3.718 16 O -0.370 6.370 17 C 0.292 3.708 18 O -0.395 6.395 19 N -0.254 5.254 20 C -0.110 4.110 21 C -0.096 4.096 22 N -0.183 5.183 23 H 0.290 0.710 24 N -0.104 5.104 25 C -0.063 4.063 26 C -0.112 4.112 27 C -0.199 4.199 28 C -0.198 4.198 29 C -0.230 4.230 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.247 0.753 35 H 0.263 0.737 36 H 0.221 0.779 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.635 -16.783 4.375 20.345 hybrid contribution -0.561 0.878 -0.122 1.049 sum 10.074 -15.905 4.254 19.301 Atomic orbital electron populations 1.69816 1.07556 1.29234 1.35301 1.25913 0.94754 1.01354 0.92210 0.86274 0.80638 0.80531 0.79158 1.19310 1.20309 1.18496 1.19600 0.97841 0.90884 1.40337 0.90217 1.17480 0.90946 0.91566 0.88389 1.21400 0.99147 0.96951 1.01151 1.20478 0.98581 0.92575 0.99456 1.20062 1.01968 0.97162 1.08357 1.17433 0.96675 0.82653 0.97993 1.43093 1.06179 1.15747 1.62489 1.19618 0.84057 0.86899 0.81209 1.90839 1.54343 1.44280 1.47557 1.20364 0.82434 0.88124 0.79881 1.90583 1.54621 1.44877 1.49461 1.42476 1.07367 1.17069 1.58463 1.17537 0.91739 0.90265 1.11432 1.23050 0.98605 0.88602 0.99385 1.45951 1.03734 1.17450 1.51190 0.70977 1.77148 0.98545 1.12061 1.22696 1.21165 0.92376 0.93101 0.99645 1.20325 0.87253 1.01125 1.02535 1.22984 0.95322 0.99214 1.02341 1.23039 1.01808 1.00278 0.94698 1.20965 1.04370 0.90949 1.06680 0.90852 0.86163 0.88783 0.88956 0.75308 0.73700 0.77896 0.85713 0.87920 0.88129 0.87813 0.88499 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.18 10.94 55.55 0.61 -19.58 16 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 8 H 0.08 2.08 7.90 -52.49 -0.41 1.66 16 9 C 0.12 3.17 5.57 -106.85 -0.59 2.58 16 10 C -0.17 -4.25 8.69 -38.83 -0.34 -4.59 16 11 C -0.09 -2.08 10.01 -39.70 -0.40 -2.48 16 12 C -0.25 -5.45 9.97 -39.09 -0.39 -5.84 16 13 C 0.14 3.16 6.25 -83.81 -0.52 2.64 16 14 N -0.63 -11.33 5.32 -10.37 -0.06 -11.38 16 15 C 0.50 8.73 7.61 -11.69 -0.09 8.64 16 16 O -0.50 -9.92 14.23 5.46 0.08 -9.85 16 17 C 0.51 7.38 7.85 -11.69 -0.09 7.29 16 18 O -0.52 -7.61 13.63 5.45 0.07 -7.53 16 19 N -0.61 -7.61 5.46 -10.51 -0.06 -7.67 16 20 C -0.01 -0.06 6.90 -83.95 -0.58 -0.64 16 21 C 0.05 0.57 10.85 -16.91 -0.18 0.38 16 22 N -0.47 -4.37 7.36 30.60 0.23 -4.14 16 23 H 0.45 2.52 8.96 -182.63 -1.64 0.88 16 24 N -0.28 -3.15 12.27 33.76 0.41 -2.74 16 25 C 0.11 1.19 6.76 -82.23 -0.56 0.63 16 26 C -0.09 -0.84 6.08 -91.77 -0.56 -1.40 16 27 C -0.16 -1.25 10.14 -26.73 -0.27 -1.52 16 28 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16 29 C -0.21 -5.19 8.39 -38.67 -0.32 -5.51 16 30 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 31 H 0.12 3.14 6.17 -52.49 -0.32 2.82 16 32 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.41 6.27 8.29 -40.82 -0.34 5.93 16 35 H 0.43 4.85 7.82 -40.82 -0.32 4.53 16 36 H 0.20 2.16 5.84 -52.48 -0.31 1.86 16 37 H 0.13 0.99 7.87 -51.93 -0.41 0.58 16 38 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.11 2.68 6.48 -52.49 -0.34 2.34 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -30.54 365.70 -9.58 -40.12 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.75 Total: 15.75 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -5.60 Total: -12.06 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 1.13 Total: -45.50 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.15 Total: -17.38 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.54 -9.58 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583034635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.208 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds