Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47411 * 274.96408 * 3 2 1 5 5 H 1.48494 * 109.47139 * 34.96774 * 3 2 1 6 6 H 1.48501 * 109.46939 * 154.96470 * 3 2 1 7 7 C 1.39931 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 196.79236 * 7 2 1 9 9 C 1.41414 * 119.99802 * 16.79450 * 7 2 1 10 10 C 1.40786 * 120.20784 * 25.17099 * 9 7 2 11 11 C 1.37654 * 119.89482 * 180.02562 * 10 9 7 12 12 C 1.38506 * 120.32896 * 0.02562 * 11 10 9 13 13 C 1.39297 * 120.42601 * 359.97438 * 12 11 10 14 14 N 1.39755 * 119.95509 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99828 * 145.77120 * 14 13 12 16 16 O 1.21394 * 120.00153 * 354.88931 * 15 14 13 17 17 C 1.49234 * 119.99712 * 174.89531 * 15 14 13 18 18 O 1.21406 * 120.00216 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99712 * 179.97438 * 17 15 14 20 20 C 1.40486 * 119.99842 * 180.27279 * 19 17 15 21 21 C 1.35847 * 126.11767 * 359.74901 * 20 19 17 22 22 N 1.35225 * 107.64772 * 179.97438 * 21 20 19 23 23 H 0.96997 * 125.99497 * 179.97438 * 22 21 20 24 24 N 1.40057 * 108.00788 * 0.02562 * 22 21 20 25 25 C 1.30823 * 108.36601 * 359.71190 * 24 22 21 26 26 C 1.50701 * 125.89699 * 180.29319 * 25 24 22 27 27 C 1.53003 * 117.50000 * 8.79740 * 26 25 24 28 28 C 1.52997 * 60.00224 * 252.51015 * 27 26 25 29 29 C 1.38343 * 120.09283 * 0.27615 * 13 12 11 30 30 H 0.96993 * 120.00519 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.04988 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.83042 * 179.97438 * 11 10 9 33 33 H 1.08010 * 119.79073 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99605 * 325.77516 * 14 13 12 35 35 H 0.97006 * 120.00001 * 359.97438 * 19 17 15 36 36 H 1.08007 * 126.17423 * 0.02562 * 21 20 19 37 37 H 1.09001 * 115.55232 * 154.50583 * 26 25 24 38 38 H 1.09006 * 117.49544 * 0.02562 * 27 26 25 39 39 H 1.09001 * 117.49671 * 145.01627 * 27 26 25 40 40 H 1.08995 * 117.49871 * 252.51269 * 28 27 26 41 41 H 1.09001 * 117.51656 * 107.47814 * 28 27 26 42 42 H 1.07994 * 120.16143 * 179.72667 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4961 2.6200 0.8024 6 1 3.5883 1.4122 0.5925 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2319 0.2696 9 6 1.3462 -2.4102 -0.3549 10 6 0.2109 -2.3732 -1.1867 11 6 -0.4286 -3.5436 -1.5272 12 6 0.0388 -4.7589 -1.0551 13 6 1.1609 -4.8113 -0.2314 14 7 1.6238 -6.0429 0.2398 15 6 2.9453 -6.2459 0.4097 16 8 3.7393 -5.3941 0.0667 17 6 3.4325 -7.5180 1.0193 18 8 2.6384 -8.3697 1.3627 19 7 4.7540 -7.7212 1.1887 20 6 5.2130 -8.9210 1.7573 21 6 4.4389 -9.9530 2.1829 22 7 5.2622 -10.9128 2.6619 23 1 4.9880 -11.7656 3.0338 24 7 6.5804 -10.4588 2.5279 25 6 6.5536 -9.2703 1.9818 26 6 7.7547 -8.4215 1.6534 27 6 9.1350 -9.0673 1.7906 28 6 8.6748 -8.0222 2.8088 29 6 1.8141 -3.6453 0.1261 30 1 -0.4850 0.8399 -0.0004 31 1 -0.1576 -1.4279 -1.5569 32 1 -1.2998 -3.5139 -2.1649 33 1 -0.4695 -5.6720 -1.3281 34 1 0.9939 -6.7516 0.4445 35 1 5.3885 -7.0407 0.9139 36 1 3.3604 -9.9989 2.1448 37 1 7.6143 -7.6993 0.8491 38 1 9.1742 -10.1063 2.1180 39 1 9.9029 -8.7701 1.0763 40 1 9.1399 -7.0374 2.7644 41 1 8.4111 -8.3731 3.8065 42 1 2.6815 -3.6843 0.7682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583034635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = 41.376799 kcal Electronic energy + Delta-G solvation = -27673.717741 eV Core-core repulsion = 23620.485196 eV Total energy + Delta-G solvation = -4053.232544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76522 -41.78248 -40.12684 -38.87195 -37.98178 -36.67024 -35.83220 -34.79447 -32.13736 -31.77203 -30.66372 -29.94292 -27.28724 -26.22679 -25.31186 -23.49268 -23.20813 -22.81605 -22.04060 -21.06933 -20.67344 -19.97253 -19.59328 -18.61086 -17.87024 -17.41167 -17.09696 -16.77537 -16.55733 -16.45208 -16.30702 -15.95911 -15.68296 -15.29834 -15.22797 -14.75002 -14.66167 -14.30912 -13.99603 -13.55408 -13.06595 -13.02137 -12.94037 -12.84467 -12.64157 -12.39922 -12.26310 -12.17953 -12.16234 -11.90201 -11.87415 -11.52186 -11.28542 -11.17508 -10.92437 -10.65358 -10.26710 -9.41136 -8.99680 -8.82164 -8.61788 -6.36176 -0.01566 0.72405 0.92213 0.99113 1.14410 1.39499 1.47705 1.52933 1.56487 1.88299 2.16615 2.22607 2.55907 2.73838 3.00422 3.24904 3.42679 3.62570 3.72400 4.00055 4.12200 4.17472 4.43583 4.45557 4.55690 4.60849 4.77047 4.81331 4.90593 5.01741 5.08043 5.09824 5.13122 5.15631 5.29182 5.30522 5.44214 5.60860 5.78345 5.91997 6.06191 6.09089 6.26934 6.29052 6.33143 6.55287 6.63005 6.68222 6.88283 6.96686 7.01877 8.33997 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.002427 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.186756 B =11532.771423 C =13136.619097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.090 3.910 10 C -0.193 4.193 11 C -0.090 4.090 12 C -0.245 4.245 13 C 0.151 3.849 14 N -0.625 5.625 15 C 0.503 3.497 16 O -0.524 6.524 17 C 0.518 3.482 18 O -0.521 6.521 19 N -0.594 5.594 20 C -0.032 4.032 21 C 0.060 3.940 22 N -0.458 5.458 23 H 0.460 0.540 24 N -0.295 5.295 25 C 0.104 3.896 26 C -0.110 4.110 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.231 4.231 30 H 0.289 0.711 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.426 0.574 35 H 0.429 0.571 36 H 0.209 0.791 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -17.340 3.835 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.527 4.527 8 H 0.086 0.914 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.109 4.109 12 C -0.266 4.266 13 C 0.058 3.942 14 N -0.272 5.272 15 C 0.285 3.715 16 O -0.400 6.400 17 C 0.299 3.701 18 O -0.397 6.397 19 N -0.239 5.239 20 C -0.137 4.137 21 C -0.090 4.090 22 N -0.170 5.170 23 H 0.309 0.691 24 N -0.119 5.119 25 C -0.064 4.064 26 C -0.130 4.130 27 C -0.189 4.189 28 C -0.194 4.194 29 C -0.253 4.253 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.265 0.735 35 H 0.268 0.732 36 H 0.226 0.774 37 H 0.152 0.848 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.106 0.894 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.890 -18.126 4.336 21.586 hybrid contribution -0.640 1.055 -0.075 1.237 sum 10.250 -17.071 4.261 20.362 Atomic orbital electron populations 1.69850 1.08764 1.30596 1.35536 1.26698 0.95562 1.04277 0.91212 0.85207 0.79053 0.76052 0.79495 1.18519 1.18955 1.18621 1.19770 0.97707 0.92437 1.42824 0.91360 1.17814 0.91909 0.92360 0.89221 1.21374 0.99866 0.97617 1.02380 1.20835 0.98957 0.92030 0.99093 1.20483 1.01229 0.98246 1.06641 1.17476 0.96239 0.83333 0.97117 1.42969 1.06933 1.14810 1.62448 1.20130 0.83523 0.87603 0.80245 1.90831 1.55030 1.45643 1.48500 1.19635 0.83134 0.86882 0.80400 1.90588 1.54793 1.44429 1.49919 1.42320 1.06601 1.17443 1.57575 1.17749 0.92503 0.90382 1.13031 1.23140 0.98859 0.88528 0.98475 1.46000 1.02994 1.17769 1.50254 0.69139 1.77136 0.99346 1.12244 1.23194 1.21456 0.92723 0.93164 0.99082 1.20501 0.87246 1.01710 1.03540 1.23029 0.94789 0.98758 1.02371 1.23081 1.01249 1.01112 0.93998 1.20948 1.04768 0.91890 1.07656 0.89994 0.87612 0.85741 0.85059 0.73473 0.73195 0.77427 0.84845 0.88686 0.86350 0.86363 0.89367 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.76 10.94 21.82 0.24 -42.52 16 2 C 0.04 1.92 5.16 85.25 0.44 2.36 16 3 Si 0.98 38.74 29.59 68.60 2.03 40.77 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.71 9.05 23.46 0.21 -27.50 16 8 H 0.07 3.78 7.90 -2.91 -0.02 3.76 16 9 C 0.09 4.97 5.57 -21.31 -0.12 4.85 16 10 C -0.19 -10.03 8.69 22.75 0.20 -9.83 16 11 C -0.09 -4.00 10.01 22.20 0.22 -3.78 16 12 C -0.25 -10.01 9.97 22.59 0.23 -9.79 16 13 C 0.15 6.57 6.25 38.16 0.24 6.81 16 14 N -0.63 -21.77 5.32 -305.07 -1.62 -23.39 16 15 C 0.50 17.29 7.61 87.20 0.66 17.95 16 16 O -0.52 -21.29 14.23 -3.38 -0.05 -21.33 16 17 C 0.52 14.45 7.85 87.20 0.68 15.13 16 18 O -0.52 -14.34 13.63 -3.42 -0.05 -14.38 16 19 N -0.59 -14.33 5.46 -305.50 -1.67 -16.00 16 20 C -0.03 -0.74 6.90 37.71 0.26 -0.48 16 21 C 0.06 1.20 10.85 83.62 0.91 2.11 16 22 N -0.46 -7.67 7.36 -57.10 -0.42 -8.09 16 23 H 0.46 4.31 8.96 -213.35 -1.91 2.40 16 24 N -0.30 -6.22 12.27 -47.10 -0.58 -6.80 16 25 C 0.10 2.21 6.76 43.22 0.29 2.50 16 26 C -0.11 -1.87 6.08 -11.54 -0.07 -1.94 16 27 C -0.15 -2.13 10.14 30.59 0.31 -1.81 16 28 C -0.16 -2.28 10.23 30.60 0.31 -1.96 16 29 C -0.23 -11.87 8.39 22.86 0.19 -11.68 16 30 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 31 H 0.11 5.72 6.17 -2.91 -0.02 5.70 16 32 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.43 12.10 8.29 -92.71 -0.77 11.34 16 35 H 0.43 9.58 7.82 -92.70 -0.73 8.86 16 36 H 0.21 4.02 5.84 -2.91 -0.02 4.00 16 37 H 0.13 1.97 7.87 -2.39 -0.02 1.95 16 38 H 0.09 1.49 7.90 -2.38 -0.02 1.47 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 4.88 6.48 -2.91 -0.02 4.86 16 Total: -1.00 -67.31 365.70 0.58 -66.73 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -2.27 Total: 42.08 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 4.97 Total: -17.06 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.05 Total: -96.80 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.09 Total: -35.72 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -67.31 0.58 -66.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583034635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.106 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds