Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48493 * 109.47433 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47399 * 119.99693 * 3 2 1 6 6 H 1.48501 * 109.46727 * 239.99456 * 3 2 1 7 7 C 1.39960 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 154.81475 * 7 2 1 9 9 C 1.41067 * 120.00035 * 334.82627 * 7 2 1 10 10 C 1.40732 * 120.30097 * 334.81866 * 9 7 2 11 11 C 1.36475 * 119.94463 * 179.97438 * 10 9 7 12 12 C 1.38864 * 120.57506 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.61570 * 0.02562 * 12 11 10 14 14 C 1.38647 * 120.03661 * 359.73851 * 13 12 11 15 15 N 1.39120 * 120.28887 * 180.26219 * 14 13 12 16 16 C 1.34786 * 119.99860 * 325.34680 * 15 14 13 17 17 O 1.21281 * 119.99592 * 4.36583 * 16 15 14 18 18 C 1.50693 * 120.00039 * 184.37270 * 16 15 14 19 19 C 1.53004 * 109.47130 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46921 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.46560 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46929 * 179.97438 * 21 20 19 23 23 S 1.81404 * 109.47234 * 179.97438 * 22 21 20 24 24 N 1.65595 * 104.44762 * 180.02562 * 23 22 21 25 25 O 1.42101 * 110.54232 * 291.62567 * 23 22 21 26 26 O 1.42097 * 110.54249 * 68.37237 * 23 22 21 27 27 H 0.97005 * 119.99936 * 174.63801 * 1 2 3 28 28 H 1.08000 * 120.03259 * 359.95633 * 10 9 7 29 29 H 1.07997 * 119.70842 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.68822 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.98307 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00637 * 145.34383 * 15 14 13 33 33 H 1.09004 * 109.46985 * 299.99600 * 18 16 15 34 34 H 1.08999 * 109.47536 * 59.99336 * 18 16 15 35 35 H 1.09001 * 109.46476 * 299.99590 * 19 18 16 36 36 H 1.09001 * 109.46674 * 59.99614 * 19 18 16 37 37 H 1.08995 * 109.47038 * 299.99293 * 20 19 18 38 38 H 1.08991 * 109.47032 * 60.00238 * 20 19 18 39 39 H 1.08998 * 109.47406 * 299.99579 * 21 20 19 40 40 H 1.08999 * 109.47478 * 59.99822 * 21 20 19 41 41 H 1.09004 * 109.47218 * 300.00030 * 22 21 20 42 42 H 1.08999 * 109.47143 * 59.99669 * 22 21 20 43 43 H 0.97003 * 119.99993 * 149.99899 * 24 23 22 44 44 H 0.97002 * 120.00195 * 329.99519 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0962 1.6965 1.2126 6 1 3.0963 1.6963 -1.2125 7 6 2.0083 -1.2121 0.0005 8 1 3.0113 -1.2566 -0.3975 9 6 1.4035 -2.3755 0.5207 10 6 0.3825 -2.2750 1.4840 11 6 -0.1980 -3.4053 1.9819 12 6 0.2093 -4.6593 1.5462 13 6 1.2100 -4.7853 0.6010 14 6 1.8137 -3.6538 0.0744 15 7 2.8176 -3.7744 -0.8812 16 6 3.6806 -4.8082 -0.8252 17 8 3.5343 -5.6756 0.0097 18 6 4.8272 -4.8862 -1.8000 19 6 5.6483 -6.1469 -1.5216 20 6 6.8121 -6.2264 -2.5117 21 6 7.6336 -7.4867 -2.2329 22 6 8.7970 -7.5666 -3.2233 23 16 9.7715 -9.0604 -2.8923 24 7 10.9826 -9.0222 -4.0210 25 8 10.4489 -8.9484 -1.6482 26 8 9.0250 -10.2249 -3.2177 27 1 -0.4850 -0.8364 -0.0785 28 1 0.0587 -1.3042 1.8292 29 1 -0.9809 -3.3238 2.7213 30 1 -0.2595 -5.5443 1.9501 31 1 1.5185 -5.7657 0.2690 32 1 2.8966 -3.1145 -1.5877 33 1 4.4373 -4.9234 -2.8173 34 1 5.4615 -4.0072 -1.6859 35 1 6.0381 -6.1092 -0.5044 36 1 5.0141 -7.0260 -1.6355 37 1 6.4219 -6.2642 -3.5287 38 1 7.4463 -5.3473 -2.3982 39 1 8.0238 -7.4485 -1.2159 40 1 6.9996 -8.3661 -2.3459 41 1 8.4065 -7.6050 -4.2403 42 1 9.4311 -6.6872 -3.1107 43 1 11.8454 -9.4173 -3.8201 44 1 10.8292 -8.6047 -4.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584789728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -120.767190 kcal Electronic energy + Delta-G solvation = -25980.835823 eV Core-core repulsion = 22023.723388 eV Total energy + Delta-G solvation = -3957.112435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.66860 -37.57411 -37.40458 -36.39466 -36.25095 -33.99112 -33.77396 -33.66185 -32.65176 -29.38849 -29.01785 -27.42325 -25.11412 -23.51387 -21.76703 -21.21534 -20.72000 -19.83518 -19.37020 -18.03037 -18.01490 -17.71978 -16.76112 -16.63362 -16.18381 -16.00464 -15.61812 -15.01173 -14.74754 -14.26678 -14.09696 -13.88234 -13.71800 -13.26234 -12.89937 -12.59598 -12.57257 -12.48516 -12.39274 -12.33631 -12.23855 -12.04301 -11.85336 -11.50761 -11.32420 -11.31423 -11.07210 -11.04065 -10.71987 -10.71049 -10.67735 -10.47461 -10.32273 -9.71063 -9.34083 -9.06461 -8.85311 -7.63671 -7.40970 -6.97664 -4.50091 -0.19039 2.43366 2.55803 2.78069 3.08779 3.20410 3.24323 3.29653 3.33857 3.81993 3.83616 3.93937 4.08442 4.40172 4.52061 4.58034 4.81870 4.94816 5.00504 5.19174 5.29408 5.37514 5.44201 5.48676 5.57706 5.60358 5.73044 5.76290 6.12211 6.19524 6.27874 6.32436 6.47820 6.54183 6.82367 6.94253 7.14032 7.36907 7.51666 7.70334 7.75344 7.90373 8.00802 8.21305 8.34197 8.66615 8.76114 8.97280 9.97357 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.001859 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.983254 B =15056.081311 C =16294.199876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.040 3.960 3 Si 1.064 2.936 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.090 3.910 10 C -0.208 4.208 11 C -0.092 4.092 12 C -0.241 4.241 13 C -0.073 4.073 14 C 0.006 3.994 15 N -0.639 5.639 16 C 0.495 3.505 17 O -0.542 6.542 18 C -0.138 4.138 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.620 4.620 23 S 2.612 3.388 24 N -1.253 6.253 25 O -0.962 6.962 26 O -0.961 6.961 27 H 0.300 0.700 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.402 0.598 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.420 0.580 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.885 -8.595 -11.969 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.888 3.112 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.228 4.228 11 C -0.111 4.111 12 C -0.261 4.261 13 C -0.093 4.093 14 C -0.088 4.088 15 N -0.281 5.281 16 C 0.282 3.718 17 O -0.421 6.421 18 C -0.179 4.179 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.750 4.750 23 S 2.704 3.296 24 N -0.925 5.925 25 O -0.952 6.952 26 O -0.950 6.950 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.237 0.763 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.249 0.751 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 17.295 -8.258 -10.538 21.871 hybrid contribution 0.430 -0.624 -1.094 1.331 sum 17.725 -8.882 -11.632 22.986 Atomic orbital electron populations 1.70466 1.08192 1.34395 1.28704 1.26973 0.95669 1.04200 0.91404 0.83641 0.75665 0.73967 0.77929 1.19852 1.20040 1.20214 1.20305 1.02726 0.94091 1.38258 0.90826 1.17500 0.92370 0.90988 0.90579 1.20750 1.03093 0.97366 1.01608 1.20401 0.98669 0.93171 0.98860 1.20272 1.03961 0.95914 1.05936 1.20701 0.94576 0.96852 0.97189 1.17620 0.97740 0.93944 0.99504 1.42898 1.29314 1.26800 1.29051 1.20649 0.83221 0.82396 0.85544 1.90644 1.74326 1.38815 1.38301 1.21636 0.96290 1.00490 0.99457 1.21359 0.95885 0.97472 0.99795 1.21563 0.96769 0.96620 0.99994 1.21366 0.94757 1.01378 0.97873 1.30474 1.12628 1.21840 1.10086 1.04819 0.74507 0.76608 0.73645 1.53257 1.30960 1.76661 1.31624 1.93620 1.72181 1.87158 1.42236 1.93633 1.72973 1.44682 1.83735 0.88589 0.87389 0.89192 0.89020 0.87156 0.76318 0.89323 0.89105 0.90824 0.90910 0.91397 0.91335 0.89845 0.89904 0.84827 0.84543 0.75082 0.76167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.16 12.32 55.55 0.68 -19.47 16 2 C 0.04 0.96 4.95 -17.33 -0.09 0.87 16 3 Si 1.06 20.46 30.00 -169.99 -5.10 15.36 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.53 -12.97 8.35 -37.86 -0.32 -13.29 16 8 H 0.07 1.73 7.39 -52.49 -0.39 1.34 16 9 C 0.09 2.29 5.32 -106.65 -0.57 1.72 16 10 C -0.21 -5.26 7.87 -39.28 -0.31 -5.57 16 11 C -0.09 -2.16 9.97 -39.99 -0.40 -2.56 16 12 C -0.24 -5.62 10.04 -39.36 -0.39 -6.01 16 13 C -0.07 -1.76 8.69 -39.44 -0.34 -2.10 16 14 C 0.01 0.13 6.34 -83.17 -0.53 -0.39 16 15 N -0.64 -12.74 4.90 -9.48 -0.05 -12.78 16 16 C 0.49 9.02 7.67 -10.98 -0.08 8.94 16 17 O -0.54 -11.83 13.40 5.56 0.07 -11.75 16 18 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 19 C -0.11 -1.20 4.50 -26.73 -0.12 -1.32 16 20 C -0.11 -0.85 5.22 -26.73 -0.14 -0.99 16 21 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 22 C -0.62 -2.65 6.17 37.16 0.23 -2.42 16 23 S 2.61 17.23 5.97 -107.50 -0.64 16.59 16 24 N -1.25 -3.92 9.36 60.35 0.57 -3.35 16 25 O -0.96 -10.33 18.10 -57.54 -1.04 -11.37 16 26 O -0.96 -10.41 18.10 -57.54 -1.04 -11.45 16 27 H 0.30 7.85 6.62 -40.82 -0.27 7.58 16 28 H 0.11 2.79 6.45 -52.49 -0.34 2.45 16 29 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.11 2.63 6.20 -52.49 -0.33 2.30 16 32 H 0.40 7.13 7.95 -40.82 -0.32 6.80 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.42 1.06 8.96 -34.47 -0.31 0.75 16 44 H 0.41 0.10 8.96 -34.47 -0.31 -0.21 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -36.27 379.46 -10.31 -46.59 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.13 Total: 11.85 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -3.35 Total: -25.93 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 1.20 Total: -35.61 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -2.01 Total: -34.57 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.10 Total: 15.36 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.64 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.27 -10.31 -46.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.180 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds