Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48493 * 109.47433 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47399 * 119.99693 * 3 2 1 6 6 H 1.48501 * 109.46727 * 239.99456 * 3 2 1 7 7 C 1.39960 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 154.81475 * 7 2 1 9 9 C 1.41067 * 120.00035 * 334.82627 * 7 2 1 10 10 C 1.40732 * 120.30097 * 334.81866 * 9 7 2 11 11 C 1.36475 * 119.94463 * 179.97438 * 10 9 7 12 12 C 1.38864 * 120.57506 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.61570 * 0.02562 * 12 11 10 14 14 C 1.38647 * 120.03661 * 359.73851 * 13 12 11 15 15 N 1.39120 * 120.28887 * 180.26219 * 14 13 12 16 16 C 1.34786 * 119.99860 * 325.34680 * 15 14 13 17 17 O 1.21281 * 119.99592 * 4.36583 * 16 15 14 18 18 C 1.50693 * 120.00039 * 184.37270 * 16 15 14 19 19 C 1.53004 * 109.47130 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46921 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.46560 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46929 * 179.97438 * 21 20 19 23 23 S 1.81404 * 109.47234 * 179.97438 * 22 21 20 24 24 N 1.65595 * 104.44762 * 180.02562 * 23 22 21 25 25 O 1.42101 * 110.54232 * 291.62567 * 23 22 21 26 26 O 1.42097 * 110.54249 * 68.37237 * 23 22 21 27 27 H 0.97005 * 119.99936 * 174.63801 * 1 2 3 28 28 H 1.08000 * 120.03259 * 359.95633 * 10 9 7 29 29 H 1.07997 * 119.70842 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.68822 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.98307 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00637 * 145.34383 * 15 14 13 33 33 H 1.09004 * 109.46985 * 299.99600 * 18 16 15 34 34 H 1.08999 * 109.47536 * 59.99336 * 18 16 15 35 35 H 1.09001 * 109.46476 * 299.99590 * 19 18 16 36 36 H 1.09001 * 109.46674 * 59.99614 * 19 18 16 37 37 H 1.08995 * 109.47038 * 299.99293 * 20 19 18 38 38 H 1.08991 * 109.47032 * 60.00238 * 20 19 18 39 39 H 1.08998 * 109.47406 * 299.99579 * 21 20 19 40 40 H 1.08999 * 109.47478 * 59.99822 * 21 20 19 41 41 H 1.09004 * 109.47218 * 300.00030 * 22 21 20 42 42 H 1.08999 * 109.47143 * 59.99669 * 22 21 20 43 43 H 0.97003 * 119.99993 * 149.99899 * 24 23 22 44 44 H 0.97002 * 120.00195 * 329.99519 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0962 1.6965 1.2126 6 1 3.0963 1.6963 -1.2125 7 6 2.0083 -1.2121 0.0005 8 1 3.0113 -1.2566 -0.3975 9 6 1.4035 -2.3755 0.5207 10 6 0.3825 -2.2750 1.4840 11 6 -0.1980 -3.4053 1.9819 12 6 0.2093 -4.6593 1.5462 13 6 1.2100 -4.7853 0.6010 14 6 1.8137 -3.6538 0.0744 15 7 2.8176 -3.7744 -0.8812 16 6 3.6806 -4.8082 -0.8252 17 8 3.5343 -5.6756 0.0097 18 6 4.8272 -4.8862 -1.8000 19 6 5.6483 -6.1469 -1.5216 20 6 6.8121 -6.2264 -2.5117 21 6 7.6336 -7.4867 -2.2329 22 6 8.7970 -7.5666 -3.2233 23 16 9.7715 -9.0604 -2.8923 24 7 10.9826 -9.0222 -4.0210 25 8 10.4489 -8.9484 -1.6482 26 8 9.0250 -10.2249 -3.2177 27 1 -0.4850 -0.8364 -0.0785 28 1 0.0587 -1.3042 1.8292 29 1 -0.9809 -3.3238 2.7213 30 1 -0.2595 -5.5443 1.9501 31 1 1.5185 -5.7657 0.2690 32 1 2.8966 -3.1145 -1.5877 33 1 4.4373 -4.9234 -2.8173 34 1 5.4615 -4.0072 -1.6859 35 1 6.0381 -6.1092 -0.5044 36 1 5.0141 -7.0260 -1.6355 37 1 6.4219 -6.2642 -3.5287 38 1 7.4463 -5.3473 -2.3982 39 1 8.0238 -7.4485 -1.2159 40 1 6.9996 -8.3661 -2.3459 41 1 8.4065 -7.6050 -4.2403 42 1 9.4311 -6.6872 -3.1107 43 1 11.8454 -9.4173 -3.8201 44 1 10.8292 -8.6047 -4.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584789728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -148.217919 kcal Electronic energy + Delta-G solvation = -25982.026176 eV Core-core repulsion = 22023.723388 eV Total energy + Delta-G solvation = -3958.302788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24818 -39.26867 -38.06951 -37.11503 -36.94158 -35.79373 -35.47389 -33.99155 -33.48561 -31.24924 -30.57716 -28.43795 -26.92619 -24.52050 -23.18529 -22.59598 -21.93529 -20.93692 -20.32137 -19.84171 -18.47811 -18.27444 -18.09740 -17.69260 -17.30821 -16.87666 -16.59887 -16.33252 -15.98216 -15.73768 -15.58130 -15.11621 -14.56230 -14.51697 -14.31363 -14.15819 -13.85754 -13.41097 -13.36484 -13.20538 -13.15470 -13.05740 -12.97430 -12.68662 -12.62849 -12.43991 -12.15095 -12.06289 -12.02560 -11.95380 -11.55445 -11.48985 -11.43455 -11.12300 -11.05236 -10.80688 -10.52521 -9.55536 -9.29417 -8.80662 -6.40844 -0.67962 0.77221 0.91172 1.54204 1.66336 1.81247 1.82188 2.02160 2.34517 2.46276 2.70385 2.78015 3.42770 3.53952 3.55068 3.83494 3.90743 3.95392 4.17214 4.37646 4.39202 4.39652 4.52478 4.58458 4.68836 4.71203 4.86180 4.89423 4.94227 4.96180 5.08610 5.13480 5.30956 5.31375 5.35338 5.47233 5.49833 5.68927 5.78153 5.93591 6.03434 6.13249 6.35249 6.41020 6.65128 6.89738 6.92514 7.42311 8.05780 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.001859 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.983254 B =15056.081311 C =16294.199876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.005 3.995 3 Si 1.115 2.885 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.061 3.939 10 C -0.228 4.228 11 C -0.098 4.098 12 C -0.244 4.244 13 C -0.091 4.091 14 C 0.002 3.998 15 N -0.640 5.640 16 C 0.489 3.511 17 O -0.582 6.582 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.102 4.102 21 C -0.130 4.130 22 C -0.597 4.597 23 S 2.620 3.380 24 N -1.239 6.239 25 O -1.011 7.011 26 O -1.012 7.012 27 H 0.285 0.715 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.412 0.588 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.424 0.576 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.817 -7.328 -14.215 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.569 4.569 8 H 0.101 0.899 9 C 0.057 3.943 10 C -0.248 4.248 11 C -0.116 4.116 12 C -0.264 4.264 13 C -0.111 4.111 14 C -0.093 4.093 15 N -0.284 5.284 16 C 0.279 3.721 17 O -0.463 6.463 18 C -0.166 4.166 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.169 4.169 22 C -0.729 4.729 23 S 2.715 3.285 24 N -0.915 5.915 25 O -1.001 7.001 26 O -1.001 7.001 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.249 0.751 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.186 0.814 42 H 0.184 0.816 43 H 0.255 0.745 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 19.264 -7.037 -12.822 24.187 hybrid contribution -0.203 -1.098 -0.390 1.182 sum 19.061 -8.134 -13.211 24.577 Atomic orbital electron populations 1.70577 1.09072 1.33383 1.30737 1.28373 0.95622 1.07351 0.89832 0.83011 0.74732 0.69825 0.79145 1.20184 1.19571 1.17289 1.20510 1.03131 0.94409 1.38830 0.89892 1.17850 0.93062 0.92084 0.91272 1.20786 1.04133 0.97377 1.02512 1.20648 0.99074 0.92720 0.99197 1.20600 1.03559 0.96752 1.05450 1.20875 0.95257 0.96925 0.98035 1.17824 0.98229 0.93428 0.99775 1.42991 1.28961 1.27792 1.28617 1.21825 0.83743 0.80737 0.85790 1.90622 1.75342 1.40092 1.40257 1.21711 0.93994 1.01890 0.98958 1.21367 0.96930 0.96376 0.99956 1.21517 0.95450 0.97280 0.99824 1.21456 0.95813 1.01244 0.98418 1.30260 1.11283 1.20328 1.11077 1.04223 0.74419 0.76861 0.72984 1.52838 1.30205 1.76676 1.31803 1.93558 1.73422 1.87995 1.45085 1.93577 1.74112 1.48176 1.84231 0.90273 0.88738 0.86758 0.86719 0.87286 0.75099 0.86081 0.86637 0.92994 0.92529 0.89144 0.89503 0.90835 0.90599 0.81440 0.81636 0.74535 0.74220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.94 12.32 21.83 0.27 -41.67 16 2 C 0.01 0.25 4.95 85.26 0.42 0.67 16 3 Si 1.12 40.03 30.00 68.60 2.06 42.09 16 4 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.25 -7.81 7.11 99.48 0.71 -7.11 16 7 C -0.54 -26.66 8.35 23.38 0.20 -26.47 16 8 H 0.08 3.81 7.39 -2.91 -0.02 3.79 16 9 C 0.06 3.19 5.32 -21.18 -0.11 3.07 16 10 C -0.23 -11.79 7.87 22.47 0.18 -11.62 16 11 C -0.10 -4.61 9.97 22.01 0.22 -4.40 16 12 C -0.24 -11.37 10.04 22.42 0.22 -11.14 16 13 C -0.09 -4.41 8.69 22.36 0.19 -4.21 16 14 C 0.00 0.10 6.34 38.88 0.25 0.35 16 15 N -0.64 -25.14 4.90 -302.28 -1.48 -26.62 16 16 C 0.49 17.40 7.67 87.65 0.67 18.07 16 17 O -0.58 -25.62 13.40 -3.03 -0.04 -25.66 16 18 C -0.13 -2.70 5.70 29.85 0.17 -2.53 16 19 C -0.11 -2.22 4.50 30.60 0.14 -2.09 16 20 C -0.10 -1.19 5.22 30.60 0.16 -1.03 16 21 C -0.13 -1.59 5.22 30.60 0.16 -1.43 16 22 C -0.60 -3.04 6.17 71.98 0.44 -2.59 16 23 S 2.62 32.17 5.97 -56.49 -0.34 31.84 16 24 N -1.24 -5.44 9.36 37.02 0.35 -5.09 16 25 O -1.01 -21.86 18.10 -127.65 -2.31 -24.17 16 26 O -1.01 -22.01 18.10 -127.65 -2.31 -24.32 16 27 H 0.28 15.38 6.62 -92.70 -0.61 14.77 16 28 H 0.09 5.05 6.45 -2.91 -0.02 5.03 16 29 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.11 5.28 6.20 -2.91 -0.02 5.26 16 32 H 0.41 14.10 7.95 -92.71 -0.74 13.36 16 33 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.17 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.42 1.57 8.96 -96.74 -0.87 0.70 16 44 H 0.43 -1.02 8.96 -96.74 -0.87 -1.89 16 Total: -1.00 -82.38 379.46 -1.76 -84.15 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -1.26 Total: 34.81 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 3.31 Total: -45.35 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.87 Total: -73.38 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -4.66 Total: -74.16 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.06 Total: 42.09 kcal Atomic # 16 Polarization: 32.17 SS G_CDS: -0.34 Total: 31.84 kcal Total: -82.38 -1.76 -84.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.073 kcal (2) G-P(sol) polarization free energy of solvation -82.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds