Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47175 * 300.00179 * 3 2 1 6 6 H 1.48500 * 109.47045 * 60.00014 * 3 2 1 7 7 C 1.37876 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46847 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47039 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00264 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99879 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99907 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99533 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46813 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.46798 * 55.00007 * 17 16 15 19 19 C 1.53002 * 109.47021 * 294.99896 * 17 16 15 20 20 O 1.42901 * 109.47034 * 65.00238 * 19 17 16 21 21 C 1.50696 * 109.46861 * 174.99928 * 17 16 15 22 22 C 1.38246 * 119.98618 * 240.00049 * 21 17 16 23 23 C 1.38216 * 120.01497 * 180.02562 * 22 21 17 24 24 C 1.38357 * 119.98603 * 359.97165 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38218 * 119.98923 * 359.44450 * 26 24 23 28 28 H 0.97001 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46680 * 60.00212 * 9 7 2 30 30 H 1.08997 * 109.46751 * 300.00084 * 9 7 2 31 31 H 1.08999 * 109.46963 * 59.99996 * 10 9 7 32 32 H 1.09000 * 109.46922 * 300.00038 * 10 9 7 33 33 H 1.08999 * 109.47350 * 60.00223 * 11 10 9 34 34 H 1.08996 * 109.47544 * 300.00225 * 11 10 9 35 35 H 0.96998 * 119.99768 * 0.02562 * 12 11 10 36 36 H 0.96998 * 120.00125 * 359.97438 * 15 13 12 37 37 H 1.08999 * 109.47369 * 59.99788 * 16 15 13 38 38 H 1.08997 * 109.47042 * 299.99263 * 16 15 13 39 39 H 1.09002 * 109.46835 * 185.00510 * 19 17 16 40 40 H 1.09002 * 109.46673 * 304.99949 * 19 17 16 41 41 H 0.96698 * 113.99426 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99321 * 359.97438 * 22 21 17 43 43 H 1.08002 * 120.00776 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00661 * 179.71600 * 26 24 23 45 45 H 1.07997 * 119.99399 * 180.27944 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7876 -7.5935 -0.0040 15 7 2.8589 -8.3957 -0.0030 16 6 2.3705 -9.7769 -0.0048 17 6 3.5606 -10.7386 -0.0051 18 1 4.2131 -10.5094 0.8374 19 6 4.3412 -10.5835 -1.3118 20 8 4.9125 -9.2751 -1.3730 21 6 3.0615 -12.1553 0.1169 22 6 3.4529 -12.9358 1.1887 23 6 2.9959 -14.2354 1.3009 24 6 2.1462 -14.7550 0.3405 25 17 1.5714 -16.3870 0.4811 26 6 1.7592 -13.9751 -0.7346 27 6 2.2122 -12.6738 -0.8428 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8539 -5.0446 -0.8914 34 1 0.8533 -5.0451 0.8885 35 1 3.3859 -5.9233 -0.0014 36 1 3.8125 -8.2184 -0.0026 37 1 1.7658 -9.9473 -0.8956 38 1 1.7641 -9.9490 0.8844 39 1 5.1354 -11.3291 -1.3512 40 1 3.6673 -10.7257 -2.1567 41 1 5.4226 -9.1060 -2.1769 42 1 4.1165 -12.5302 1.9381 43 1 3.3021 -14.8452 2.1381 44 1 1.0996 -14.3816 -1.4871 45 1 1.9065 -12.0634 -1.6797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588337749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -84.128415 kcal Electronic energy + Delta-G solvation = -25696.130858 eV Core-core repulsion = 21738.563493 eV Total energy + Delta-G solvation = -3957.567365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42790 -39.53873 -37.84617 -36.87676 -35.57255 -34.83430 -33.34122 -32.92754 -31.63151 -31.02888 -29.11350 -26.90427 -25.62268 -23.84447 -23.26610 -22.70077 -20.84920 -20.66229 -20.26078 -18.36712 -17.61906 -17.38681 -16.69453 -16.33452 -15.87011 -15.56711 -15.50011 -15.12020 -14.72779 -14.47344 -14.22589 -14.06563 -14.02671 -13.85102 -13.75169 -13.62030 -13.01979 -12.36470 -12.25642 -12.08632 -11.91578 -11.76051 -11.72012 -11.61325 -11.36421 -11.21260 -10.89313 -10.67179 -10.53615 -10.42601 -9.99011 -9.81048 -9.57646 -9.39918 -9.12665 -9.07142 -9.03503 -8.45501 -8.34604 -5.99078 -4.01909 0.55233 0.75699 1.64482 2.89235 3.04198 3.31624 3.39033 3.42654 3.51727 3.70093 4.09837 4.31328 4.38136 4.41149 4.46417 4.61958 4.73321 4.75996 4.81286 4.87072 5.10658 5.15218 5.20515 5.36724 5.40561 5.57247 5.63631 5.68005 5.70666 5.80586 5.88658 6.00312 6.23207 6.25554 6.61494 6.64886 6.69041 6.91237 7.09073 7.11864 7.31969 7.67915 7.81110 8.00400 8.34038 8.41589 8.91133 9.05148 9.62088 11.12256 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.001487 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.798339 B =18819.229308 C =19322.831342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.742 5.742 13 C 0.698 3.302 14 O -0.600 6.600 15 N -0.741 5.741 16 C 0.153 3.847 17 C -0.061 4.061 18 H 0.096 0.904 19 C 0.086 3.914 20 O -0.571 6.571 21 C -0.071 4.071 22 C -0.096 4.096 23 C -0.109 4.109 24 C -0.034 4.034 25 Cl -0.071 7.071 26 C -0.107 4.107 27 C -0.098 4.098 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.385 0.615 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -33.605 -1.510 35.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.398 3.602 14 O -0.479 6.479 15 N -0.401 5.401 16 C 0.028 3.972 17 C -0.080 4.080 18 H 0.114 0.886 19 C 0.008 3.992 20 O -0.377 6.377 21 C -0.072 4.072 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.061 4.061 25 Cl -0.042 7.042 26 C -0.126 4.126 27 C -0.116 4.116 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.234 0.766 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.718 -33.769 -0.925 35.152 hybrid contribution 1.467 0.813 -0.536 1.761 sum 11.185 -32.957 -1.460 34.834 Atomic orbital electron populations 1.69979 1.06045 1.26518 1.50728 1.25031 0.94849 0.99279 0.95343 0.86531 0.80042 0.83810 0.77564 1.19777 1.21040 1.21030 1.21254 0.93031 0.90960 1.50683 0.92603 1.19039 0.93894 0.90848 0.97693 1.21882 0.99752 0.93380 1.00793 1.21473 0.91324 0.84223 1.01743 1.45346 1.10360 1.04438 1.79474 1.16042 0.85255 0.80889 0.78008 1.90906 1.14357 1.84280 1.58389 1.45121 1.09766 1.04402 1.80793 1.21035 0.94187 0.79607 1.02352 1.20378 0.97232 0.91096 0.99318 0.88559 1.22183 0.96051 0.84514 0.96431 1.86257 1.72265 1.32505 1.46714 1.19567 0.97718 0.94583 0.95321 1.21064 0.99630 0.93046 0.97634 1.21069 0.97143 0.95935 0.98603 1.21001 1.00232 0.86993 0.97877 1.98385 1.87939 1.20110 1.97816 1.21082 1.00372 0.93852 0.97272 1.21068 0.96672 0.94677 0.99161 0.93020 0.96239 0.96240 0.92796 0.92805 0.92107 0.92091 0.77329 0.75759 0.91816 0.91594 0.93184 0.93068 0.76606 0.84743 0.84719 0.84676 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.14 2.52 5.67 -4.04 -0.02 2.49 16 12 N -0.74 -11.42 5.56 -65.23 -0.36 -11.78 16 13 C 0.70 11.31 8.57 -86.92 -0.74 10.57 16 14 O -0.60 -12.33 16.34 5.29 0.09 -12.24 16 15 N -0.74 -8.65 5.01 -65.22 -0.33 -8.98 16 16 C 0.15 1.53 4.80 -4.04 -0.02 1.51 16 17 C -0.06 -0.40 2.46 -91.77 -0.23 -0.62 16 18 H 0.10 0.60 7.88 -51.93 -0.41 0.19 16 19 C 0.09 0.46 6.17 37.16 0.23 0.69 16 20 O -0.57 -3.35 10.88 -35.23 -0.38 -3.73 16 21 C -0.07 -0.45 4.78 -104.62 -0.50 -0.95 16 22 C -0.10 -0.55 9.67 -39.59 -0.38 -0.94 16 23 C -0.11 -0.67 9.83 -39.55 -0.39 -1.06 16 24 C -0.03 -0.24 6.32 -39.50 -0.25 -0.49 16 25 Cl -0.07 -0.50 28.96 -51.86 -1.50 -2.00 16 26 C -0.11 -0.69 9.83 -39.55 -0.39 -1.08 16 27 C -0.10 -0.61 8.81 -39.59 -0.35 -0.96 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.94 8.49 -40.82 -0.35 4.59 16 36 H 0.40 3.98 6.30 -40.82 -0.26 3.72 16 37 H 0.06 0.68 7.57 -51.93 -0.39 0.29 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.05 0.27 7.57 -51.93 -0.39 -0.13 16 41 H 0.39 0.92 9.12 45.56 0.42 1.33 16 42 H 0.13 0.55 7.95 -52.48 -0.42 0.13 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.71 7.22 -52.49 -0.38 0.33 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -35.00 392.01 -10.55 -45.55 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.95 Total: 3.37 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.73 Total: -6.40 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.05 Total: -47.03 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.30 Total: -15.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.00 -10.55 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.581 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds