Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47175 * 300.00179 * 3 2 1 6 6 H 1.48500 * 109.47045 * 60.00014 * 3 2 1 7 7 C 1.37876 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46847 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47039 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00264 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99879 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99907 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99533 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46813 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.46798 * 55.00007 * 17 16 15 19 19 C 1.53002 * 109.47021 * 294.99896 * 17 16 15 20 20 O 1.42901 * 109.47034 * 65.00238 * 19 17 16 21 21 C 1.50696 * 109.46861 * 174.99928 * 17 16 15 22 22 C 1.38246 * 119.98618 * 240.00049 * 21 17 16 23 23 C 1.38216 * 120.01497 * 180.02562 * 22 21 17 24 24 C 1.38357 * 119.98603 * 359.97165 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38218 * 119.98923 * 359.44450 * 26 24 23 28 28 H 0.97001 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46680 * 60.00212 * 9 7 2 30 30 H 1.08997 * 109.46751 * 300.00084 * 9 7 2 31 31 H 1.08999 * 109.46963 * 59.99996 * 10 9 7 32 32 H 1.09000 * 109.46922 * 300.00038 * 10 9 7 33 33 H 1.08999 * 109.47350 * 60.00223 * 11 10 9 34 34 H 1.08996 * 109.47544 * 300.00225 * 11 10 9 35 35 H 0.96998 * 119.99768 * 0.02562 * 12 11 10 36 36 H 0.96998 * 120.00125 * 359.97438 * 15 13 12 37 37 H 1.08999 * 109.47369 * 59.99788 * 16 15 13 38 38 H 1.08997 * 109.47042 * 299.99263 * 16 15 13 39 39 H 1.09002 * 109.46835 * 185.00510 * 19 17 16 40 40 H 1.09002 * 109.46673 * 304.99949 * 19 17 16 41 41 H 0.96698 * 113.99426 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.99321 * 359.97438 * 22 21 17 43 43 H 1.08002 * 120.00776 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00661 * 179.71600 * 26 24 23 45 45 H 1.07997 * 119.99399 * 180.27944 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7876 -7.5935 -0.0040 15 7 2.8589 -8.3957 -0.0030 16 6 2.3705 -9.7769 -0.0048 17 6 3.5606 -10.7386 -0.0051 18 1 4.2131 -10.5094 0.8374 19 6 4.3412 -10.5835 -1.3118 20 8 4.9125 -9.2751 -1.3730 21 6 3.0615 -12.1553 0.1169 22 6 3.4529 -12.9358 1.1887 23 6 2.9959 -14.2354 1.3009 24 6 2.1462 -14.7550 0.3405 25 17 1.5714 -16.3870 0.4811 26 6 1.7592 -13.9751 -0.7346 27 6 2.2122 -12.6738 -0.8428 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8539 -5.0446 -0.8914 34 1 0.8533 -5.0451 0.8885 35 1 3.3859 -5.9233 -0.0014 36 1 3.8125 -8.2184 -0.0026 37 1 1.7658 -9.9473 -0.8956 38 1 1.7641 -9.9490 0.8844 39 1 5.1354 -11.3291 -1.3512 40 1 3.6673 -10.7257 -2.1567 41 1 5.4226 -9.1060 -2.1769 42 1 4.1165 -12.5302 1.9381 43 1 3.3021 -14.8452 2.1381 44 1 1.0996 -14.3816 -1.4871 45 1 1.9065 -12.0634 -1.6797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588337749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -108.437330 kcal Electronic energy + Delta-G solvation = -25697.184972 eV Core-core repulsion = 21738.563493 eV Total energy + Delta-G solvation = -3958.621479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19246 -40.51263 -38.42148 -37.37466 -36.98620 -35.78953 -35.15175 -33.93714 -32.74800 -32.07679 -29.78903 -28.49369 -26.61665 -24.84069 -24.23211 -23.55678 -22.26702 -21.77655 -21.31547 -19.29332 -18.51896 -18.35694 -17.83081 -17.39101 -17.00494 -16.63195 -16.44644 -16.06332 -15.86619 -15.63694 -15.29319 -15.17039 -14.85498 -14.43995 -14.39810 -14.36908 -14.21905 -13.89975 -13.69421 -13.41702 -12.92009 -12.75650 -12.58004 -12.52163 -12.41840 -12.31299 -12.24115 -11.89755 -11.73024 -11.64461 -11.61416 -11.27085 -11.10993 -10.81570 -10.54213 -10.31552 -10.02697 -9.65980 -9.62101 -8.17569 -6.29005 0.06594 0.30631 1.14659 1.43211 1.43393 1.56716 1.78217 2.21471 2.43679 2.56757 3.12067 3.16252 3.56241 3.63155 3.87934 3.90830 3.95191 4.20479 4.22078 4.26427 4.28244 4.35953 4.41124 4.59295 4.60140 4.66340 4.71223 4.86390 4.95705 4.98835 5.01249 5.04937 5.19618 5.20216 5.24766 5.50388 5.52403 5.58118 5.62149 5.73655 5.78935 5.86513 6.13266 6.25187 6.88448 6.92516 7.24795 7.40549 7.67201 8.94784 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.001487 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.798339 B =18819.229308 C =19322.831342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.694 3.306 14 O -0.647 6.647 15 N -0.719 5.719 16 C 0.151 3.849 17 C -0.048 4.048 18 H 0.105 0.895 19 C 0.088 3.912 20 O -0.586 6.586 21 C -0.075 4.075 22 C -0.096 4.096 23 C -0.114 4.114 24 C -0.046 4.046 25 Cl -0.077 7.077 26 C -0.116 4.116 27 C -0.103 4.103 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.411 0.589 36 H 0.417 0.583 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.401 0.599 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.142 -33.874 -1.514 36.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.393 3.607 14 O -0.530 6.530 15 N -0.378 5.378 16 C 0.026 3.974 17 C -0.067 4.067 18 H 0.123 0.877 19 C 0.010 3.990 20 O -0.396 6.396 21 C -0.076 4.076 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.073 4.073 25 Cl -0.048 7.048 26 C -0.134 4.134 27 C -0.121 4.121 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.247 0.753 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.613 -34.072 -0.940 36.344 hybrid contribution 0.570 0.835 -0.540 1.146 sum 13.183 -33.237 -1.481 35.786 Atomic orbital electron populations 1.70125 1.07963 1.27685 1.51794 1.26030 0.95742 1.03566 0.94806 0.85350 0.79216 0.78588 0.77571 1.18137 1.20611 1.20640 1.21716 0.93783 0.91966 1.50295 0.91464 1.18959 0.94486 0.92997 0.95102 1.21583 0.98412 0.91644 1.02125 1.21050 0.91377 0.84749 1.00281 1.45000 1.10720 1.03565 1.79320 1.16240 0.85053 0.81565 0.77815 1.90878 1.16645 1.84965 1.60510 1.44995 1.09777 1.04099 1.78968 1.21156 0.95715 0.79230 1.01288 1.20261 0.95793 0.90107 1.00555 0.87682 1.22167 0.96414 0.84843 0.95585 1.86178 1.72654 1.32691 1.48046 1.19590 0.97964 0.94460 0.95604 1.21297 0.99575 0.92826 0.97700 1.21282 0.96873 0.96319 0.98805 1.21172 1.00771 0.86921 0.98434 1.98380 1.88054 1.20514 1.97845 1.21235 1.00642 0.94029 0.97532 1.21204 0.96691 0.94714 0.99520 0.92862 0.98913 0.98969 0.91378 0.91307 0.93673 0.93735 0.75279 0.74271 0.92587 0.93095 0.91601 0.93000 0.74770 0.82863 0.83447 0.83917 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 11 C 0.15 5.59 5.67 86.38 0.49 6.08 16 12 N -0.73 -21.63 5.56 -478.54 -2.66 -24.29 16 13 C 0.69 22.04 8.57 179.05 1.53 23.58 16 14 O -0.65 -26.96 16.34 -4.00 -0.07 -27.02 16 15 N -0.72 -15.76 5.01 -478.52 -2.40 -18.16 16 16 C 0.15 2.87 4.80 86.38 0.41 3.28 16 17 C -0.05 -0.53 2.46 -11.54 -0.03 -0.56 16 18 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16 19 C 0.09 0.74 6.17 71.98 0.44 1.18 16 20 O -0.59 -5.33 10.88 -148.98 -1.62 -6.95 16 21 C -0.08 -0.83 4.78 -19.86 -0.09 -0.92 16 22 C -0.10 -0.93 9.67 22.27 0.22 -0.72 16 23 C -0.11 -1.25 9.83 22.29 0.22 -1.03 16 24 C -0.05 -0.61 6.32 22.32 0.14 -0.46 16 25 Cl -0.08 -1.03 28.96 -2.72 -0.08 -1.11 16 26 C -0.12 -1.42 9.83 22.29 0.22 -1.20 16 27 C -0.10 -1.19 8.81 22.27 0.20 -1.00 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.32 8.49 -92.71 -0.79 8.53 16 36 H 0.42 7.21 6.30 -92.71 -0.58 6.62 16 37 H 0.06 1.17 7.57 -2.39 -0.02 1.15 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.05 0.44 7.57 -2.39 -0.02 0.42 16 41 H 0.40 0.84 9.12 -74.06 -0.68 0.17 16 42 H 0.15 0.85 7.95 -2.91 -0.02 0.83 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.14 1.37 7.22 -2.91 -0.02 1.35 16 Total: -1.00 -76.25 392.01 -0.78 -77.03 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -1.02 Total: 15.80 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.75 Total: -4.04 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.77 Total: -99.66 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.69 Total: -33.97 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -76.25 -0.78 -77.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.411 kcal (2) G-P(sol) polarization free energy of solvation -76.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds