Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39792 * 120.00680 * 260.27858 * 3 2 1 5 5 C 1.37597 * 119.98916 * 179.79272 * 4 3 2 6 6 C 1.39712 * 120.00998 * 0.45889 * 5 4 3 7 7 C 1.47735 * 119.99417 * 179.76797 * 6 5 4 8 8 N 1.31273 * 126.37948 * 180.02562 * 7 6 5 9 9 N 1.28666 * 109.23389 * 180.02562 * 8 7 6 10 10 C 1.30447 * 109.51872 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.18382 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47308 * 89.97524 * 11 10 9 13 13 C 1.48533 * 110.99969 * 52.60765 * 12 11 10 14 14 C 1.54934 * 103.22902 * 159.72322 * 13 12 11 15 15 C 1.54602 * 102.91943 * 322.58001 * 14 13 12 16 16 O 1.42895 * 110.31051 * 263.04547 * 15 14 13 17 17 C 1.50699 * 110.30580 * 140.87441 * 15 14 13 18 18 H 1.08000 * 120.00194 * 244.28520 * 17 15 14 19 19 C 1.37874 * 119.99915 * 64.28725 * 17 15 14 20 20 N 1.31513 * 120.00022 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00113 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47012 * 89.99789 * 21 19 17 23 23 H 1.48499 * 109.47336 * 209.99873 * 21 19 17 24 24 H 1.48507 * 109.47070 * 330.00137 * 21 19 17 25 25 C 1.47902 * 111.00163 * 170.00131 * 12 11 10 26 26 O 1.34362 * 107.63392 * 359.74271 * 10 9 8 27 27 C 1.39719 * 120.01449 * 359.79228 * 6 5 4 28 28 C 1.37595 * 120.01103 * 359.97438 * 27 6 5 29 29 H 1.08002 * 120.00238 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99370 * 180.23033 * 5 4 3 31 31 H 1.09006 * 109.47231 * 209.97814 * 11 10 9 32 32 H 1.09001 * 109.46850 * 329.97438 * 11 10 9 33 33 H 1.09005 * 110.66483 * 278.15520 * 13 12 11 34 34 H 1.08999 * 110.66914 * 41.27884 * 13 12 11 35 35 H 1.09000 * 110.72384 * 204.22511 * 14 13 12 36 36 H 1.08991 * 110.87931 * 81.01161 * 14 13 12 37 37 H 0.96698 * 113.99802 * 295.71544 * 16 15 14 38 38 H 0.97006 * 120.00169 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.91458 * 333.50795 * 25 12 11 40 40 H 1.08992 * 109.92049 * 94.80150 * 25 12 11 41 41 H 1.08007 * 119.99553 * 179.97438 * 27 6 5 42 42 H 1.07998 * 120.00589 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 0.2054 1.1932 5 6 4.6430 0.2017 1.1935 6 6 5.3415 0.0029 0.0000 7 6 6.8188 0.0041 -0.0002 8 7 7.5975 -0.1689 -1.0427 9 7 8.8270 -0.1061 -0.6686 10 6 8.8809 0.1082 0.6170 11 6 10.1330 0.2471 1.4441 12 7 10.5391 1.6582 1.4846 13 6 9.4134 2.5238 1.9202 14 6 10.1240 3.8126 2.4045 15 6 11.4014 3.2683 3.0844 16 8 11.2074 3.1681 4.4966 17 6 12.5770 4.1603 2.7788 18 1 13.4084 3.7800 2.2039 19 6 12.5912 5.4619 3.2332 20 7 11.5786 5.9252 3.9329 21 14 14.0487 6.5674 2.8551 22 1 13.8107 7.2794 1.5738 23 1 14.2154 7.5583 3.9485 24 1 15.2789 5.7432 2.7422 25 6 11.6176 1.8712 2.4740 26 8 7.6184 0.1891 1.0695 27 6 4.6431 -0.1965 -1.1937 28 6 3.2672 -0.1977 -1.1940 29 1 2.7271 0.3627 2.1152 30 1 5.1831 0.3561 2.1159 31 1 9.9399 -0.1047 2.4576 32 1 10.9304 -0.3479 0.9988 33 1 8.7497 2.7418 1.0835 34 1 8.8633 2.0573 2.7375 35 1 9.5034 4.3486 3.1226 36 1 10.3793 4.4554 1.5622 37 1 11.0661 4.0180 4.9355 38 1 11.5888 6.8409 4.2530 39 1 11.5608 1.1123 3.2543 40 1 12.5884 1.8279 1.9803 41 1 5.1834 -0.3497 -2.1162 42 1 2.7275 -0.3515 -2.1168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = 60.185985 kcal Electronic energy + Delta-G solvation = -27924.299225 eV Core-core repulsion = 23871.882308 eV Total energy + Delta-G solvation = -4052.416917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.28133 -39.98228 -38.63862 -36.96283 -36.30287 -35.24987 -33.36422 -32.14690 -31.80633 -31.45934 -29.45359 -28.23360 -26.56039 -25.23847 -24.25964 -23.50254 -22.55321 -22.25382 -20.50945 -19.58289 -19.53190 -18.03371 -17.52669 -17.20773 -16.58040 -16.02169 -15.46981 -15.16019 -15.03747 -14.84929 -14.56914 -14.37059 -14.17709 -14.01263 -13.94067 -13.50221 -13.26654 -13.06218 -12.68449 -12.59604 -12.50614 -12.24065 -12.05616 -11.83021 -11.73472 -11.49527 -11.32164 -11.12682 -11.00553 -10.76329 -10.57812 -10.50555 -10.42905 -10.05478 -9.70558 -9.30327 -8.97590 -8.65876 -8.22819 -8.10699 -6.26749 -4.32979 -0.30107 0.71364 1.15761 1.94533 2.13589 2.16516 2.60037 3.21124 3.27606 3.28484 3.31229 3.32096 3.47106 4.04496 4.23273 4.27021 4.30951 4.36680 4.58459 4.68154 4.96795 5.00163 5.01346 5.11635 5.12120 5.36368 5.37100 5.49688 5.53833 5.60242 5.63937 5.78602 5.80668 5.91440 6.04417 6.06117 6.19752 6.28691 6.77264 6.85625 6.96496 7.06282 7.28068 7.43262 7.47855 7.76011 8.05501 8.13937 8.68682 9.33365 9.43136 10.81089 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.002227 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.066268 B =12567.255996 C =13332.355140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.253 3.747 3 C -0.011 4.011 4 C -0.068 4.068 5 C -0.086 4.086 6 C 0.016 3.984 7 C 0.183 3.817 8 N -0.263 5.263 9 N -0.271 5.271 10 C 0.197 3.803 11 C 0.136 3.864 12 N -0.505 5.505 13 C 0.027 3.973 14 C -0.116 4.116 15 C 0.245 3.755 16 O -0.595 6.595 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.055 3.945 26 O -0.215 6.215 27 C -0.071 4.071 28 C -0.069 4.069 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.386 0.614 38 H 0.267 0.733 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 -12.326 -5.299 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.063 4.063 3 C -0.015 4.015 4 C -0.089 4.089 5 C -0.106 4.106 6 C 0.013 3.987 7 C -0.024 4.024 8 N -0.112 5.112 9 N -0.118 5.118 10 C -0.013 4.013 11 C 0.006 3.994 12 N -0.231 5.231 13 C -0.100 4.100 14 C -0.155 4.155 15 C 0.205 3.795 16 O -0.405 6.405 17 C -0.567 4.567 18 H 0.083 0.917 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.072 4.072 26 O -0.094 6.094 27 C -0.090 4.090 28 C -0.090 4.090 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.170 0.830 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.657 -12.878 -7.060 20.749 hybrid contribution 0.457 1.347 1.884 2.361 sum -14.200 -11.531 -5.176 19.010 Atomic orbital electron populations 1.81291 1.11993 1.08112 1.06981 1.25622 0.92552 0.94065 0.94067 1.16202 0.84532 1.05443 0.95300 1.21103 0.93513 0.97017 0.97238 1.21238 0.93876 0.97711 0.97730 1.17442 0.83646 1.02310 0.95259 1.25248 0.94122 1.02049 0.81015 1.74722 0.96152 1.15974 1.24344 1.74503 1.11335 1.17036 1.08963 1.28086 0.84591 0.96811 0.91780 1.20960 0.87201 0.94698 0.96500 1.65144 1.08439 1.01539 1.48028 1.23389 0.92992 0.96110 0.97533 1.22997 0.97833 0.93969 1.00717 1.19321 0.92047 0.89131 0.79031 1.86066 1.95091 1.37314 1.22016 1.21669 1.04461 0.96273 1.34337 0.91745 1.25017 0.96249 0.97851 0.94252 1.69607 1.30439 1.17071 1.36907 0.86434 0.82562 0.80089 0.77985 1.20501 1.21145 1.19715 1.22964 0.93984 0.98479 0.91746 1.84855 1.17706 1.68467 1.38380 1.21130 0.93371 0.96909 0.97616 1.21115 0.93454 0.97235 0.97146 0.83845 0.83699 0.91245 0.85896 0.92255 0.94236 0.91396 0.91142 0.76261 0.92255 0.93791 0.89321 0.83021 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.25 18.54 41.83 0.78 -3.48 16 2 C 0.25 1.98 15.32 -22.47 -0.34 1.63 16 3 C -0.01 -0.06 5.74 -106.81 -0.61 -0.68 16 4 C -0.07 -0.38 9.74 -39.23 -0.38 -0.76 16 5 C -0.09 -0.60 9.70 -39.26 -0.38 -0.98 16 6 C 0.02 0.14 5.88 -104.91 -0.62 -0.48 16 7 C 0.18 2.26 7.98 -13.91 -0.11 2.15 16 8 N -0.26 -3.80 11.90 32.05 0.38 -3.42 16 9 N -0.27 -4.29 12.22 32.58 0.40 -3.89 16 10 C 0.20 2.87 6.76 -12.87 -0.09 2.79 16 11 C 0.14 1.90 5.66 -4.98 -0.03 1.87 16 12 N -0.51 -9.00 5.39 -231.89 -1.25 -10.25 16 13 C 0.03 0.50 5.40 -1.90 -0.01 0.49 16 14 C -0.12 -2.57 5.49 -24.87 -0.14 -2.71 16 15 C 0.24 5.72 0.99 -90.41 -0.09 5.63 16 16 O -0.59 -14.58 12.93 -35.23 -0.46 -15.03 16 17 C -0.53 -13.58 8.10 -34.44 -0.28 -13.86 16 18 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16 19 C 0.07 1.74 5.26 -17.82 -0.09 1.65 16 20 N -0.90 -23.23 10.88 55.43 0.60 -22.63 16 21 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.05 1.08 6.17 -2.75 -0.02 1.07 16 26 O -0.22 -2.89 10.43 4.12 0.04 -2.85 16 27 C -0.07 -0.48 9.68 -39.26 -0.38 -0.86 16 28 C -0.07 -0.36 9.74 -39.24 -0.38 -0.75 16 29 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.15 0.93 7.92 -52.49 -0.42 0.51 16 31 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 32 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 34 H 0.04 0.70 8.02 -51.93 -0.42 0.29 16 35 H 0.07 1.56 8.05 -51.93 -0.42 1.14 16 36 H 0.07 1.68 7.85 -51.93 -0.41 1.27 16 37 H 0.39 9.71 7.05 45.56 0.32 10.03 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.04 0.82 7.39 -51.93 -0.38 0.44 16 40 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 41 H 0.15 0.96 7.85 -52.48 -0.41 0.55 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -29.59 367.90 -7.05 -36.64 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.12 Total: 7.97 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.95 Total: -3.79 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.91 Total: -43.67 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.41 Total: -17.88 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.59 -7.05 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.829 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds