Wall clock time and date at job start Sat Apr 11 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39792 * 120.00680 * 260.27858 * 3 2 1 5 5 C 1.37597 * 119.98916 * 179.79272 * 4 3 2 6 6 C 1.39712 * 120.00998 * 0.45889 * 5 4 3 7 7 C 1.47735 * 119.99417 * 179.76797 * 6 5 4 8 8 N 1.31273 * 126.37948 * 180.02562 * 7 6 5 9 9 N 1.28666 * 109.23389 * 180.02562 * 8 7 6 10 10 C 1.30447 * 109.51872 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.18382 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47308 * 89.97524 * 11 10 9 13 13 C 1.48533 * 110.99969 * 52.60765 * 12 11 10 14 14 C 1.54934 * 103.22902 * 159.72322 * 13 12 11 15 15 C 1.54602 * 102.91943 * 322.58001 * 14 13 12 16 16 O 1.42895 * 110.31051 * 263.04547 * 15 14 13 17 17 C 1.50699 * 110.30580 * 140.87441 * 15 14 13 18 18 H 1.08000 * 120.00194 * 244.28520 * 17 15 14 19 19 C 1.37874 * 119.99915 * 64.28725 * 17 15 14 20 20 N 1.31513 * 120.00022 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00113 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47012 * 89.99789 * 21 19 17 23 23 H 1.48499 * 109.47336 * 209.99873 * 21 19 17 24 24 H 1.48507 * 109.47070 * 330.00137 * 21 19 17 25 25 C 1.47902 * 111.00163 * 170.00131 * 12 11 10 26 26 O 1.34362 * 107.63392 * 359.74271 * 10 9 8 27 27 C 1.39719 * 120.01449 * 359.79228 * 6 5 4 28 28 C 1.37595 * 120.01103 * 359.97438 * 27 6 5 29 29 H 1.08002 * 120.00238 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99370 * 180.23033 * 5 4 3 31 31 H 1.09006 * 109.47231 * 209.97814 * 11 10 9 32 32 H 1.09001 * 109.46850 * 329.97438 * 11 10 9 33 33 H 1.09005 * 110.66483 * 278.15520 * 13 12 11 34 34 H 1.08999 * 110.66914 * 41.27884 * 13 12 11 35 35 H 1.09000 * 110.72384 * 204.22511 * 14 13 12 36 36 H 1.08991 * 110.87931 * 81.01161 * 14 13 12 37 37 H 0.96698 * 113.99802 * 295.71544 * 16 15 14 38 38 H 0.97006 * 120.00169 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.91458 * 333.50795 * 25 12 11 40 40 H 1.08992 * 109.92049 * 94.80150 * 25 12 11 41 41 H 1.08007 * 119.99553 * 179.97438 * 27 6 5 42 42 H 1.07998 * 120.00589 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 0.2054 1.1932 5 6 4.6430 0.2017 1.1935 6 6 5.3415 0.0029 0.0000 7 6 6.8188 0.0041 -0.0002 8 7 7.5975 -0.1689 -1.0427 9 7 8.8270 -0.1061 -0.6686 10 6 8.8809 0.1082 0.6170 11 6 10.1330 0.2471 1.4441 12 7 10.5391 1.6582 1.4846 13 6 9.4134 2.5238 1.9202 14 6 10.1240 3.8126 2.4045 15 6 11.4014 3.2683 3.0844 16 8 11.2074 3.1681 4.4966 17 6 12.5770 4.1603 2.7788 18 1 13.4084 3.7800 2.2039 19 6 12.5912 5.4619 3.2332 20 7 11.5786 5.9252 3.9329 21 14 14.0487 6.5674 2.8551 22 1 13.8107 7.2794 1.5738 23 1 14.2154 7.5583 3.9485 24 1 15.2789 5.7432 2.7422 25 6 11.6176 1.8712 2.4740 26 8 7.6184 0.1891 1.0695 27 6 4.6431 -0.1965 -1.1937 28 6 3.2672 -0.1977 -1.1940 29 1 2.7271 0.3627 2.1152 30 1 5.1831 0.3561 2.1159 31 1 9.9399 -0.1047 2.4576 32 1 10.9304 -0.3479 0.9988 33 1 8.7497 2.7418 1.0835 34 1 8.8633 2.0573 2.7375 35 1 9.5034 4.3486 3.1226 36 1 10.3793 4.4554 1.5622 37 1 11.0661 4.0180 4.9355 38 1 11.5888 6.8409 4.2530 39 1 11.5608 1.1123 3.2543 40 1 12.5884 1.8279 1.9803 41 1 5.1834 -0.3497 -2.1162 42 1 2.7275 -0.3515 -2.1168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:47 Heat of formation + Delta-G solvation = 36.417226 kcal Electronic energy + Delta-G solvation = -27925.329915 eV Core-core repulsion = 23871.882308 eV Total energy + Delta-G solvation = -4053.447607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.30869 -40.54521 -40.20383 -37.66021 -37.34986 -36.89469 -34.26637 -34.10592 -32.63922 -32.30797 -30.69218 -29.88325 -27.88436 -26.27579 -25.75639 -24.32024 -23.36068 -23.23415 -21.95288 -21.31923 -20.08585 -19.12749 -18.86432 -18.58120 -17.54796 -17.08680 -16.89333 -16.58467 -16.22003 -15.77099 -15.65711 -15.56328 -15.18552 -14.93575 -14.65100 -14.63388 -14.30830 -13.97715 -13.94191 -13.71415 -13.55733 -13.45811 -13.25373 -13.17189 -13.11384 -12.94612 -12.75120 -12.45193 -12.36858 -12.29087 -12.17283 -12.05421 -11.91140 -11.37553 -11.10369 -10.60375 -10.17760 -10.11061 -9.77229 -9.48859 -8.20797 -6.33229 -0.98220 0.24021 0.25855 0.99058 1.18300 1.42330 1.45234 1.53878 1.54113 1.90182 2.40605 2.50906 2.71894 2.75611 2.94439 3.08410 3.16265 3.62565 3.78529 3.83379 3.91104 4.01646 4.05635 4.15520 4.18172 4.25281 4.37037 4.40510 4.47066 4.51896 4.58963 4.60769 4.69311 4.92885 5.00864 5.08737 5.12280 5.14755 5.24804 5.35178 5.56141 5.58892 5.73852 5.82031 5.94885 6.15293 6.35625 6.71403 7.10098 7.36531 7.45679 8.85198 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.002227 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.066268 B =12567.255996 C =13332.355140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.279 3.721 3 C -0.007 4.007 4 C -0.058 4.058 5 C -0.083 4.083 6 C -0.008 4.008 7 C 0.201 3.799 8 N -0.292 5.292 9 N -0.293 5.293 10 C 0.188 3.812 11 C 0.138 3.862 12 N -0.514 5.514 13 C 0.044 3.956 14 C -0.110 4.110 15 C 0.228 3.772 16 O -0.598 6.598 17 C -0.551 4.551 18 H 0.058 0.942 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.957 3.043 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.065 3.935 26 O -0.218 6.218 27 C -0.068 4.068 28 C -0.056 4.056 29 H 0.166 0.834 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.379 0.621 38 H 0.268 0.732 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -13.236 -5.503 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.036 4.036 3 C -0.011 4.011 4 C -0.079 4.079 5 C -0.103 4.103 6 C -0.011 4.011 7 C -0.007 4.007 8 N -0.140 5.140 9 N -0.141 5.141 10 C -0.023 4.023 11 C 0.010 3.990 12 N -0.241 5.241 13 C -0.083 4.083 14 C -0.149 4.149 15 C 0.188 3.812 16 O -0.408 6.408 17 C -0.589 4.589 18 H 0.077 0.923 19 C -0.173 4.173 20 N -0.556 5.556 21 Si 0.783 3.217 22 H -0.205 1.205 23 H -0.208 1.208 24 H -0.195 1.195 25 C -0.062 4.062 26 O -0.097 6.097 27 C -0.087 4.087 28 C -0.076 4.076 29 H 0.183 0.817 30 H 0.168 0.832 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.172 0.828 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.570 -13.807 -7.285 22.049 hybrid contribution 0.618 1.611 1.932 2.590 sum -14.953 -12.196 -5.353 20.025 Atomic orbital electron populations 1.81331 1.13375 1.09756 1.08473 1.25710 0.92529 0.92682 0.92679 1.16263 0.83568 1.05369 0.95879 1.21289 0.92909 0.95702 0.97967 1.21308 0.94345 0.97299 0.97304 1.17650 0.81860 1.04762 0.96821 1.25919 0.95247 0.99330 0.80158 1.74668 0.95983 1.18129 1.25175 1.74428 1.12353 1.17599 1.09698 1.28030 0.85042 0.97638 0.91564 1.21050 0.87815 0.92362 0.97823 1.65038 1.07792 1.03984 1.47249 1.23168 0.92914 0.94464 0.97794 1.22763 0.97695 0.95159 0.99247 1.19569 0.91816 0.91201 0.78590 1.86058 1.95113 1.36825 1.22783 1.21973 1.05216 0.97155 1.34561 0.92343 1.25670 0.98382 0.98989 0.94277 1.69685 1.31435 1.17245 1.37205 0.85573 0.79997 0.78474 0.77656 1.20511 1.20774 1.19499 1.22758 0.94646 0.96607 0.92214 1.84854 1.17511 1.68673 1.38691 1.21202 0.93884 0.96489 0.97121 1.21316 0.92731 0.95657 0.97900 0.81676 0.83168 0.89269 0.83883 0.91973 0.93162 0.92944 0.93706 0.77034 0.92212 0.92509 0.89516 0.82753 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.79 18.54 19.00 0.35 -8.44 16 2 C 0.28 3.74 15.32 88.33 1.35 5.09 16 3 C -0.01 -0.06 5.74 -21.28 -0.12 -0.18 16 4 C -0.06 -0.48 9.74 22.49 0.22 -0.26 16 5 C -0.08 -0.96 9.70 22.47 0.22 -0.74 16 6 C -0.01 -0.13 5.88 -20.05 -0.12 -0.25 16 7 C 0.20 4.73 7.98 87.29 0.70 5.43 16 8 N -0.29 -8.25 11.90 -166.33 -1.98 -10.23 16 9 N -0.29 -9.11 12.22 -165.33 -2.02 -11.13 16 10 C 0.19 5.25 6.76 88.31 0.60 5.85 16 11 C 0.14 3.61 5.66 85.56 0.48 4.09 16 12 N -0.51 -17.73 5.39 -887.58 -4.78 -22.51 16 13 C 0.04 1.60 5.40 86.65 0.47 2.07 16 14 C -0.11 -4.91 5.49 31.80 0.17 -4.74 16 15 C 0.23 10.70 0.99 -10.66 -0.01 10.69 16 16 O -0.60 -29.42 12.93 -148.98 -1.93 -31.35 16 17 C -0.55 -28.55 8.10 25.60 0.21 -28.34 16 18 H 0.06 3.02 7.34 -2.91 -0.02 2.99 16 19 C 0.03 1.38 5.26 84.65 0.45 1.82 16 20 N -0.92 -47.78 10.88 21.45 0.23 -47.54 16 21 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.06 2.50 6.17 86.45 0.53 3.03 16 26 O -0.22 -5.57 10.43 -8.19 -0.09 -5.65 16 27 C -0.07 -0.78 9.68 22.48 0.22 -0.56 16 28 C -0.06 -0.43 9.74 22.49 0.22 -0.21 16 29 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 30 H 0.15 1.59 7.92 -2.91 -0.02 1.57 16 31 H 0.09 2.02 7.81 -2.38 -0.02 2.00 16 32 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.06 2.22 7.90 -2.38 -0.02 2.20 16 34 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 35 H 0.05 2.45 8.05 -2.39 -0.02 2.43 16 36 H 0.04 2.19 7.85 -2.39 -0.02 2.17 16 37 H 0.38 19.40 7.05 -74.06 -0.52 18.88 16 38 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 39 H 0.06 2.02 7.39 -2.39 -0.02 2.00 16 40 H 0.09 3.36 7.39 -2.39 -0.02 3.34 16 41 H 0.15 1.72 7.85 -2.91 -0.02 1.69 16 42 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -64.13 367.90 -2.04 -66.17 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.56 Total: 24.33 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.58 Total: 2.79 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -8.20 Total: -99.86 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -2.01 Total: -37.00 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -64.13 -2.04 -66.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.583 kcal (2) G-P(sol) polarization free energy of solvation -64.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds