Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53770 * 113.18736 * 2 1 4 4 C 1.54125 * 100.59136 * 270.14125 * 3 2 1 5 5 C 1.51124 * 104.42007 * 334.26197 * 4 3 2 6 6 O 1.21285 * 124.73652 * 189.04376 * 5 4 3 7 7 N 1.35822 * 110.53110 * 9.04139 * 5 4 3 8 8 C 1.46719 * 138.91607 * 195.55036 * 7 5 4 9 9 H 1.09002 * 108.65855 * 46.14795 * 8 7 5 10 10 C 1.50697 * 108.66095 * 288.16220 * 8 7 5 11 11 O 1.21289 * 119.99700 * 357.32410 * 10 8 7 12 12 N 1.34780 * 120.00483 * 177.32278 * 10 8 7 13 13 C 1.47743 * 125.81887 * 359.90665 * 12 10 8 14 14 C 1.54909 * 104.83995 * 155.82587 * 13 12 10 15 15 C 1.55159 * 101.57990 * 37.09908 * 14 13 12 16 16 O 1.42904 * 110.72203 * 82.85631 * 15 14 13 17 17 C 1.50701 * 110.87006 * 206.06403 * 15 14 13 18 18 H 1.07992 * 120.00209 * 113.60851 * 17 15 14 19 19 C 1.37880 * 119.99814 * 293.60002 * 17 15 14 20 20 N 1.31517 * 119.99752 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00184 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47071 * 60.00387 * 21 19 17 23 23 H 1.48495 * 109.47452 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47477 * 300.00802 * 21 19 17 25 25 C 1.47020 * 125.64983 * 179.97438 * 12 10 8 26 26 C 1.54411 * 113.51413 * 167.15348 * 8 7 5 27 27 S 1.83564 * 112.74247 * 126.01827 * 2 1 3 28 28 H 1.08996 * 109.47274 * 294.99731 * 1 2 3 29 29 H 1.09002 * 109.47336 * 54.99590 * 1 2 3 30 30 H 1.09003 * 109.47281 * 174.99600 * 1 2 3 31 31 H 1.08999 * 111.18710 * 27.72496 * 3 2 1 32 32 H 1.09002 * 111.18351 * 152.04759 * 3 2 1 33 33 H 1.09000 * 110.30649 * 215.58998 * 4 3 2 34 34 H 1.09001 * 110.67468 * 93.12082 * 4 3 2 35 35 H 1.09003 * 110.29227 * 37.02448 * 13 12 10 36 36 H 1.08996 * 110.53057 * 274.75660 * 13 12 10 37 37 H 1.08994 * 111.00889 * 279.01887 * 14 13 12 38 38 H 1.09001 * 111.03628 * 155.18095 * 14 13 12 39 39 H 0.96704 * 113.99611 * 66.48128 * 16 15 14 40 40 H 0.97005 * 119.99855 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.88367 * 61.60808 * 25 12 10 42 42 H 1.09000 * 109.88319 * 300.59426 * 25 12 10 43 43 H 1.09000 * 110.99218 * 100.22392 * 26 8 7 44 44 H 1.08998 * 110.99696 * 224.01402 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1354 1.4135 0.0000 4 6 2.2435 1.6754 -1.5150 5 6 2.3434 0.2980 -2.1288 6 8 2.5997 0.0774 -3.2936 7 7 2.1061 -0.6584 -1.1941 8 6 2.2912 -2.1032 -1.0185 9 1 3.3015 -2.3660 -1.3321 10 6 1.3097 -2.8263 -1.9044 11 8 0.5113 -2.1965 -2.5654 12 7 1.3191 -4.1728 -1.9623 13 6 2.2322 -5.0639 -1.2173 14 6 1.4793 -6.4144 -1.1230 15 6 0.7787 -6.4777 -2.5060 16 8 1.6728 -6.9755 -3.5034 17 6 -0.4666 -7.3237 -2.4388 18 1 -1.4364 -6.8691 -2.5768 19 6 -0.3678 -8.6783 -2.2012 20 7 0.8133 -9.2319 -2.0328 21 14 -1.9112 -9.7272 -2.1186 22 1 -2.6376 -9.6417 -3.4111 23 1 -1.5365 -11.1394 -1.8534 24 1 -2.7870 -9.2341 -1.0253 25 6 0.4214 -5.0016 -2.7801 26 6 2.0864 -2.5783 0.4364 27 16 2.2396 -0.9955 1.3693 28 1 -0.3633 0.4342 0.9314 29 1 -0.3634 0.5895 -0.8418 30 1 -0.3634 -1.0238 -0.0896 31 1 1.4636 2.1298 0.4728 32 1 3.1158 1.4221 0.4764 33 1 3.1390 2.2564 -1.7355 34 1 1.3560 2.1919 -1.8806 35 1 2.4208 -4.6644 -0.2209 36 1 3.1699 -5.1894 -1.7586 37 1 0.7480 -6.3985 -0.3149 38 1 2.1764 -7.2433 -1.0000 39 1 1.9282 -7.8996 -3.3767 40 1 0.8828 -10.1848 -1.8654 41 1 0.5672 -4.7751 -3.8362 42 1 -0.6150 -4.8128 -2.5002 43 1 1.0967 -3.0154 0.5687 44 1 2.8646 -3.2825 0.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -86.306243 kcal Electronic energy + Delta-G solvation = -28950.563088 eV Core-core repulsion = 24994.944992 eV Total energy + Delta-G solvation = -3955.618096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99550 -39.46398 -37.44147 -36.95233 -34.65101 -34.09878 -32.21556 -30.55503 -30.40871 -29.54645 -28.25583 -25.76812 -25.65148 -24.46611 -22.37793 -21.69003 -20.36001 -19.47869 -18.85946 -17.51416 -17.41149 -17.12848 -16.24806 -15.99003 -15.56885 -15.05735 -15.00277 -14.75105 -14.44914 -14.28361 -14.15270 -13.89208 -13.43555 -13.34363 -13.07733 -12.96848 -12.84481 -12.63591 -12.24948 -12.04984 -11.90262 -11.74812 -11.55040 -11.42655 -11.32607 -11.24335 -10.92965 -10.80852 -10.62810 -10.56419 -10.19860 -10.03805 -9.64488 -9.46941 -8.88781 -8.71593 -8.29383 -8.16478 -8.13503 -6.36342 -4.43893 1.29764 1.65508 2.32117 2.40511 2.80878 3.17461 3.22728 3.25777 3.41792 3.80831 3.98204 4.21043 4.25256 4.39853 4.49601 4.60569 4.73379 4.91130 4.97092 5.06450 5.14081 5.28523 5.32822 5.39439 5.41409 5.49292 5.55161 5.64730 5.77915 5.89468 5.91053 5.94012 6.10838 6.38286 6.57943 6.78018 6.84650 6.92177 7.20193 7.24834 7.66628 7.90685 7.92191 7.97610 8.44287 8.58300 9.24762 9.38925 10.71437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.003173 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.183197 B = 8822.093672 C = 9151.857617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.175 3.825 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.546 3.454 6 O -0.505 6.505 7 N -0.604 5.604 8 C 0.143 3.857 9 H 0.112 0.888 10 C 0.509 3.491 11 O -0.528 6.528 12 N -0.605 5.605 13 C 0.085 3.915 14 C -0.136 4.136 15 C 0.250 3.750 16 O -0.586 6.586 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.124 3.876 26 C -0.065 4.065 27 S -0.260 6.260 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.387 0.613 40 H 0.270 0.730 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 16.780 9.915 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.334 3.666 6 O -0.377 6.377 7 N -0.342 5.342 8 C 0.035 3.965 9 H 0.130 0.870 10 C 0.293 3.707 11 O -0.405 6.405 12 N -0.339 5.339 13 C -0.037 4.037 14 C -0.175 4.175 15 C 0.209 3.791 16 O -0.397 6.397 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.537 5.537 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.002 3.998 26 C -0.214 4.214 27 S -0.030 6.030 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.239 0.761 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.780 17.679 9.745 20.745 hybrid contribution -1.128 -1.826 -0.717 2.263 sum 3.651 15.853 9.029 18.606 Atomic orbital electron populations 1.22095 0.90399 1.04181 1.03129 1.24276 0.96931 0.95537 0.85345 1.22452 1.03002 0.93013 0.96209 1.22248 1.06108 0.94511 0.95153 1.21046 0.75053 0.86033 0.84434 1.90756 1.47074 1.84218 1.15660 1.49292 1.63461 1.04683 1.16768 1.21013 1.00892 0.79763 0.94863 0.87025 1.20279 0.85403 0.81342 0.83670 1.90702 1.39722 1.65712 1.44328 1.48688 1.36017 1.04182 1.45037 1.22804 0.93829 0.92350 0.94740 1.23311 0.99516 0.93351 1.01272 1.19416 0.88230 0.87567 0.83885 1.86112 1.67198 1.33634 1.52734 1.21497 0.92796 0.93120 1.50068 0.91752 1.24983 0.96783 0.97784 0.93390 1.69560 1.22848 1.12623 1.48708 0.86449 0.82650 0.78867 0.78886 1.19950 1.21046 1.20035 1.22101 0.92680 0.90532 0.94457 1.24726 1.08059 0.97326 0.91295 1.88228 1.82663 1.05670 1.26460 0.90165 0.90816 0.91198 0.88262 0.88416 0.87032 0.87099 0.91844 0.91561 0.91320 0.89462 0.76134 0.91966 0.92043 0.90997 0.87163 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.34 37.16 0.35 -1.07 16 2 C 0.18 1.83 0.86 -66.69 -0.06 1.77 16 3 C -0.11 -0.77 6.33 -25.74 -0.16 -0.93 16 4 C -0.14 -1.17 6.77 -27.09 -0.18 -1.36 16 5 C 0.55 7.92 8.22 -10.30 -0.08 7.84 16 6 O -0.50 -9.77 18.03 5.55 0.10 -9.67 16 7 N -0.60 -8.28 2.36 -152.53 -0.36 -8.64 16 8 C 0.14 2.01 3.17 -68.23 -0.22 1.80 16 9 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 10 C 0.51 9.40 7.05 -10.99 -0.08 9.32 16 11 O -0.53 -11.65 16.59 5.55 0.09 -11.56 16 12 N -0.61 -11.46 3.33 -170.26 -0.57 -12.03 16 13 C 0.09 1.41 6.59 -2.35 -0.02 1.40 16 14 C -0.14 -2.73 5.68 -24.58 -0.14 -2.87 16 15 C 0.25 5.83 0.86 -89.94 -0.08 5.76 16 16 O -0.59 -14.59 13.09 -35.23 -0.46 -15.05 16 17 C -0.54 -13.66 8.22 -34.44 -0.28 -13.94 16 18 H 0.06 1.65 7.53 -52.49 -0.40 1.25 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 20 N -0.90 -22.38 10.70 55.43 0.59 -21.79 16 21 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.12 2.75 6.21 -3.07 -0.02 2.73 16 26 C -0.07 -0.73 5.26 37.90 0.20 -0.53 16 27 S -0.26 -2.72 22.30 -107.50 -2.40 -5.12 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.47 8.03 -51.93 -0.42 0.06 16 32 H 0.10 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.81 4.72 -51.93 -0.25 0.56 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.09 1.83 7.77 -51.93 -0.40 1.42 16 39 H 0.39 9.67 6.98 45.56 0.32 9.98 16 40 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 42 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 43 H 0.11 1.31 7.78 -51.93 -0.40 0.90 16 44 H 0.13 1.20 6.74 -51.93 -0.35 0.85 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -31.87 363.57 -9.04 -40.91 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.63 Total: 11.05 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -0.86 Total: 11.65 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.33 Total: -42.46 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.27 Total: -36.29 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.40 Total: -5.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.87 -9.04 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.396 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds