Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53770 * 113.18736 * 2 1 4 4 C 1.54125 * 100.59136 * 270.14125 * 3 2 1 5 5 C 1.51124 * 104.42007 * 334.26197 * 4 3 2 6 6 O 1.21285 * 124.73652 * 189.04376 * 5 4 3 7 7 N 1.35822 * 110.53110 * 9.04139 * 5 4 3 8 8 C 1.46719 * 138.91607 * 195.55036 * 7 5 4 9 9 H 1.09002 * 108.65855 * 46.14795 * 8 7 5 10 10 C 1.50697 * 108.66095 * 288.16220 * 8 7 5 11 11 O 1.21289 * 119.99700 * 357.32410 * 10 8 7 12 12 N 1.34780 * 120.00483 * 177.32278 * 10 8 7 13 13 C 1.47743 * 125.81887 * 359.90665 * 12 10 8 14 14 C 1.54909 * 104.83995 * 155.82587 * 13 12 10 15 15 C 1.55159 * 101.57990 * 37.09908 * 14 13 12 16 16 O 1.42904 * 110.72203 * 82.85631 * 15 14 13 17 17 C 1.50701 * 110.87006 * 206.06403 * 15 14 13 18 18 H 1.07992 * 120.00209 * 113.60851 * 17 15 14 19 19 C 1.37880 * 119.99814 * 293.60002 * 17 15 14 20 20 N 1.31517 * 119.99752 * 0.02562 * 19 17 15 21 21 Si 1.86794 * 120.00184 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47071 * 60.00387 * 21 19 17 23 23 H 1.48495 * 109.47452 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47477 * 300.00802 * 21 19 17 25 25 C 1.47020 * 125.64983 * 179.97438 * 12 10 8 26 26 C 1.54411 * 113.51413 * 167.15348 * 8 7 5 27 27 S 1.83564 * 112.74247 * 126.01827 * 2 1 3 28 28 H 1.08996 * 109.47274 * 294.99731 * 1 2 3 29 29 H 1.09002 * 109.47336 * 54.99590 * 1 2 3 30 30 H 1.09003 * 109.47281 * 174.99600 * 1 2 3 31 31 H 1.08999 * 111.18710 * 27.72496 * 3 2 1 32 32 H 1.09002 * 111.18351 * 152.04759 * 3 2 1 33 33 H 1.09000 * 110.30649 * 215.58998 * 4 3 2 34 34 H 1.09001 * 110.67468 * 93.12082 * 4 3 2 35 35 H 1.09003 * 110.29227 * 37.02448 * 13 12 10 36 36 H 1.08996 * 110.53057 * 274.75660 * 13 12 10 37 37 H 1.08994 * 111.00889 * 279.01887 * 14 13 12 38 38 H 1.09001 * 111.03628 * 155.18095 * 14 13 12 39 39 H 0.96704 * 113.99611 * 66.48128 * 16 15 14 40 40 H 0.97005 * 119.99855 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.88367 * 61.60808 * 25 12 10 42 42 H 1.09000 * 109.88319 * 300.59426 * 25 12 10 43 43 H 1.09000 * 110.99218 * 100.22392 * 26 8 7 44 44 H 1.08998 * 110.99696 * 224.01402 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1354 1.4135 0.0000 4 6 2.2435 1.6754 -1.5150 5 6 2.3434 0.2980 -2.1288 6 8 2.5997 0.0774 -3.2936 7 7 2.1061 -0.6584 -1.1941 8 6 2.2912 -2.1032 -1.0185 9 1 3.3015 -2.3660 -1.3321 10 6 1.3097 -2.8263 -1.9044 11 8 0.5113 -2.1965 -2.5654 12 7 1.3191 -4.1728 -1.9623 13 6 2.2322 -5.0639 -1.2173 14 6 1.4793 -6.4144 -1.1230 15 6 0.7787 -6.4777 -2.5060 16 8 1.6728 -6.9755 -3.5034 17 6 -0.4666 -7.3237 -2.4388 18 1 -1.4364 -6.8691 -2.5768 19 6 -0.3678 -8.6783 -2.2012 20 7 0.8133 -9.2319 -2.0328 21 14 -1.9112 -9.7272 -2.1186 22 1 -2.6376 -9.6417 -3.4111 23 1 -1.5365 -11.1394 -1.8534 24 1 -2.7870 -9.2341 -1.0253 25 6 0.4214 -5.0016 -2.7801 26 6 2.0864 -2.5783 0.4364 27 16 2.2396 -0.9955 1.3693 28 1 -0.3633 0.4342 0.9314 29 1 -0.3634 0.5895 -0.8418 30 1 -0.3634 -1.0238 -0.0896 31 1 1.4636 2.1298 0.4728 32 1 3.1158 1.4221 0.4764 33 1 3.1390 2.2564 -1.7355 34 1 1.3560 2.1919 -1.8806 35 1 2.4208 -4.6644 -0.2209 36 1 3.1699 -5.1894 -1.7586 37 1 0.7480 -6.3985 -0.3149 38 1 2.1764 -7.2433 -1.0000 39 1 1.9282 -7.8996 -3.3767 40 1 0.8828 -10.1848 -1.8654 41 1 0.5672 -4.7751 -3.8362 42 1 -0.6150 -4.8128 -2.5002 43 1 1.0967 -3.0154 0.5687 44 1 2.8646 -3.2825 0.7305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -109.383146 kcal Electronic energy + Delta-G solvation = -28951.563778 eV Core-core repulsion = 24994.944992 eV Total energy + Delta-G solvation = -3956.618786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08646 -40.88671 -39.07121 -38.14877 -36.29690 -35.24935 -34.17840 -31.78131 -31.41173 -30.84157 -29.86865 -27.31755 -26.52915 -25.81655 -23.84635 -22.54599 -21.80852 -21.01075 -20.08256 -19.23059 -18.60980 -18.50988 -17.27389 -17.06088 -16.99180 -16.88980 -16.29425 -16.08113 -15.79730 -15.72057 -15.21252 -14.95906 -14.78663 -14.52902 -14.32666 -14.01679 -13.85951 -13.68100 -13.60163 -13.49848 -13.32759 -13.26540 -13.17581 -12.80199 -12.68637 -12.49494 -12.31022 -12.19144 -12.02205 -11.99219 -11.67620 -11.33762 -11.18790 -10.88521 -10.65732 -10.18331 -10.02275 -9.75107 -8.94918 -8.28366 -6.42636 0.47025 0.77737 1.22359 1.33069 1.41320 1.43560 1.45366 1.50777 2.01562 2.37500 2.90255 2.96918 3.17782 3.23456 3.45833 3.66551 3.72360 3.82477 3.89659 3.94291 4.14153 4.17116 4.27033 4.33328 4.38050 4.51509 4.52259 4.58581 4.59910 4.75900 4.82709 4.94240 4.98087 5.01752 5.10424 5.12995 5.17433 5.41514 5.49453 5.73208 5.89499 6.02097 6.42764 6.60010 6.85943 6.96307 7.28257 7.41719 8.77890 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.003173 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.183197 B = 8822.093672 C = 9151.857617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 C -0.094 4.094 4 C -0.127 4.127 5 C 0.530 3.470 6 O -0.569 6.569 7 N -0.614 5.614 8 C 0.146 3.854 9 H 0.120 0.880 10 C 0.504 3.496 11 O -0.572 6.572 12 N -0.607 5.607 13 C 0.094 3.906 14 C -0.125 4.125 15 C 0.237 3.763 16 O -0.597 6.597 17 C -0.565 4.565 18 H 0.051 0.949 19 C 0.040 3.960 20 N -0.906 5.906 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.276 1.276 24 H -0.271 1.271 25 C 0.131 3.869 26 C -0.068 4.068 27 S -0.233 6.233 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.383 0.617 40 H 0.274 0.726 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 18.351 12.915 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.132 4.132 4 C -0.167 4.167 5 C 0.321 3.679 6 O -0.447 6.447 7 N -0.351 5.351 8 C 0.038 3.962 9 H 0.138 0.862 10 C 0.291 3.709 11 O -0.451 6.451 12 N -0.340 5.340 13 C -0.027 4.027 14 C -0.163 4.163 15 C 0.196 3.804 16 O -0.408 6.408 17 C -0.603 4.603 18 H 0.069 0.931 19 C -0.162 4.162 20 N -0.545 5.545 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.201 1.201 24 H -0.196 1.196 25 C 0.008 3.992 26 C -0.217 4.217 27 S -0.003 6.003 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.628 19.258 12.811 23.805 hybrid contribution -1.432 -2.323 -1.691 3.210 sum 4.196 16.936 11.120 20.690 Atomic orbital electron populations 1.22097 0.90551 1.02361 1.04549 1.24603 0.96979 0.97391 0.84080 1.22562 1.04181 0.91198 0.95309 1.22347 1.08032 0.90790 0.95569 1.22327 0.73430 0.88301 0.83816 1.90713 1.50024 1.85497 1.18419 1.49552 1.63005 1.04520 1.18044 1.21088 0.99307 0.80148 0.95676 0.86225 1.21226 0.85452 0.80841 0.83423 1.90672 1.41766 1.66511 1.46195 1.48732 1.35823 1.04679 1.44769 1.22870 0.92682 0.90191 0.96994 1.23084 0.99247 0.95162 0.98853 1.19585 0.87971 0.87442 0.85359 1.86099 1.67481 1.33382 1.53810 1.21697 0.93082 0.94192 1.51374 0.93082 1.25560 0.99277 0.98401 0.92928 1.69610 1.23776 1.12927 1.48178 0.85600 0.79730 0.77768 0.78454 1.20635 1.20110 1.19598 1.21792 0.92983 0.90971 0.93475 1.24734 1.08724 0.98791 0.89421 1.88139 1.82411 1.04207 1.25497 0.87215 0.91170 0.94370 0.84794 0.87262 0.84650 0.85415 0.87131 0.91009 0.91517 0.90152 0.76490 0.91640 0.94897 0.92192 0.87856 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.34 71.98 0.67 -1.86 16 2 C 0.16 3.00 0.86 44.96 0.04 3.04 16 3 C -0.09 -0.95 6.33 31.23 0.20 -0.75 16 4 C -0.13 -1.78 6.77 30.36 0.21 -1.57 16 5 C 0.53 15.11 8.22 87.63 0.72 15.83 16 6 O -0.57 -22.80 18.03 -3.05 -0.05 -22.86 16 7 N -0.61 -16.22 2.36 -754.27 -1.78 -18.00 16 8 C 0.15 3.99 3.17 44.68 0.14 4.13 16 9 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 10 C 0.50 19.02 7.05 87.66 0.62 19.64 16 11 O -0.57 -26.49 16.59 -3.06 -0.05 -26.54 16 12 N -0.61 -23.40 3.33 -810.98 -2.70 -26.10 16 13 C 0.09 3.00 6.59 86.79 0.57 3.58 16 14 C -0.12 -4.99 5.68 31.99 0.18 -4.81 16 15 C 0.24 11.39 0.86 -10.35 -0.01 11.39 16 16 O -0.60 -30.67 13.09 -148.98 -1.95 -32.62 16 17 C -0.57 -29.61 8.22 25.60 0.21 -29.40 16 18 H 0.05 2.73 7.53 -2.91 -0.02 2.70 16 19 C 0.04 2.01 5.28 84.65 0.45 2.45 16 20 N -0.91 -45.14 10.70 21.45 0.23 -44.91 16 21 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.13 6.12 6.21 86.73 0.54 6.65 16 26 C -0.07 -1.35 5.26 72.46 0.38 -0.97 16 27 S -0.23 -4.07 22.30 -56.49 -1.26 -5.33 16 28 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.13 0.51 8.03 -2.39 -0.02 0.49 16 32 H 0.11 0.93 7.87 -2.39 -0.02 0.91 16 33 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 2.49 4.72 -2.39 -0.01 2.48 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 38 H 0.08 3.33 7.77 -2.39 -0.02 3.31 16 39 H 0.38 19.68 6.98 -74.05 -0.52 19.16 16 40 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 41 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 42 H 0.06 2.88 7.63 -2.39 -0.02 2.86 16 43 H 0.10 2.25 7.78 -2.39 -0.02 2.24 16 44 H 0.16 2.25 6.74 -2.39 -0.02 2.23 16 Total: -1.00 -74.20 363.57 -0.11 -74.31 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.52 Total: 31.98 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 4.92 Total: 27.34 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -4.25 Total: -89.02 kcal Atomic # 8 Polarization: -79.96 SS G_CDS: -2.06 Total: -82.01 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -1.26 Total: -5.33 kcal Total: -74.20 -0.11 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.073 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds