Wall clock time and date at job start Sat Apr 11 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53775 * 112.66571 * 2 1 4 4 C 1.54860 * 100.61276 * 270.19028 * 3 2 1 5 5 C 1.51127 * 104.39514 * 334.41811 * 4 3 2 6 6 O 1.21284 * 124.73875 * 188.87291 * 5 4 3 7 7 N 1.35828 * 110.52305 * 8.89406 * 5 4 3 8 8 C 1.46731 * 138.90809 * 195.54265 * 7 5 4 9 9 H 1.09000 * 108.65871 * 287.98480 * 8 7 5 10 10 C 1.50699 * 108.65603 * 45.96579 * 8 7 5 11 11 O 1.21281 * 120.00116 * 27.35098 * 10 8 7 12 12 N 1.34777 * 119.99940 * 207.34196 * 10 8 7 13 13 C 1.47420 * 125.64892 * 355.02863 * 12 10 8 14 14 C 1.54904 * 104.83383 * 204.08744 * 13 12 10 15 15 C 1.55154 * 101.58246 * 322.99069 * 14 13 12 16 16 O 1.42903 * 110.72168 * 277.13681 * 15 14 13 17 17 C 1.50706 * 110.72369 * 153.86287 * 15 14 13 18 18 H 1.07995 * 119.99632 * 241.45521 * 17 15 14 19 19 C 1.37871 * 119.99654 * 61.45224 * 17 15 14 20 20 N 1.31513 * 120.00318 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99763 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47114 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47341 * 119.99982 * 21 19 17 24 24 H 1.48495 * 109.47238 * 240.00077 * 21 19 17 25 25 C 1.47025 * 125.64704 * 174.97670 * 12 10 8 26 26 C 1.54403 * 113.50947 * 166.97216 * 8 7 5 27 27 S 1.83559 * 113.27734 * 126.02815 * 2 1 3 28 28 H 1.09005 * 109.46495 * 178.44259 * 1 2 3 29 29 H 1.08997 * 109.47564 * 298.44232 * 1 2 3 30 30 H 1.08998 * 109.47492 * 58.45114 * 1 2 3 31 31 H 1.08998 * 111.18406 * 152.35138 * 3 2 1 32 32 H 1.08992 * 111.18652 * 28.03203 * 3 2 1 33 33 H 1.09003 * 110.44973 * 215.69568 * 4 3 2 34 34 H 1.08994 * 110.55811 * 93.20631 * 4 3 2 35 35 H 1.09003 * 110.36696 * 85.24719 * 13 12 10 36 36 H 1.09005 * 110.36594 * 322.92546 * 13 12 10 37 37 H 1.09007 * 111.00590 * 81.06007 * 14 13 12 38 38 H 1.09002 * 111.00976 * 204.91328 * 14 13 12 39 39 H 0.96699 * 113.99685 * 298.55130 * 16 15 14 40 40 H 0.97007 * 119.99874 * 179.97438 * 20 19 17 41 41 H 1.09008 * 109.87891 * 59.56768 * 25 12 10 42 42 H 1.08992 * 110.01170 * 298.47351 * 25 12 10 43 43 H 1.09006 * 110.99113 * 100.40199 * 26 8 7 44 44 H 1.08999 * 110.99703 * 224.22774 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1226 1.4190 0.0000 4 6 2.2278 1.6841 -1.5221 5 6 2.3358 0.3077 -2.1367 6 8 2.5893 0.0892 -3.3024 7 7 2.1087 -0.6506 -1.2012 8 6 2.3052 -2.0942 -1.0267 9 1 1.5947 -2.6222 -1.6627 10 6 3.7015 -2.4477 -1.4696 11 8 4.5850 -1.6190 -1.4092 12 7 3.9687 -3.6850 -1.9326 13 6 3.0213 -4.8141 -1.9632 14 6 3.9136 -6.0803 -1.9712 15 6 5.0973 -5.6216 -2.8633 16 8 4.7731 -5.7664 -4.2475 17 6 6.3492 -6.3891 -2.5243 18 1 7.2206 -5.8664 -2.1585 19 6 6.3819 -7.7584 -2.6810 20 7 5.3209 -8.3949 -3.1268 21 14 7.9334 -8.7099 -2.2602 22 1 8.9773 -7.7680 -1.7821 23 1 7.6337 -9.6987 -1.1935 24 1 8.4224 -9.4193 -3.4696 25 6 5.2529 -4.1317 -2.4920 26 6 2.1134 -2.5703 0.4296 27 16 2.2554 -0.9918 1.3637 28 1 -0.3632 -1.0274 -0.0279 29 1 -0.3634 0.4894 0.9036 30 1 -0.3634 0.5377 -0.8757 31 1 3.1051 1.4355 0.4716 32 1 1.4466 2.1281 0.4776 33 1 3.1182 2.2718 -1.7456 34 1 1.3352 2.1940 -1.8844 35 1 2.4119 -4.7736 -2.8660 36 1 2.3880 -4.8019 -1.0761 37 1 4.2545 -6.3245 -0.9651 38 1 3.3902 -6.9244 -2.4203 39 1 4.5891 -6.6772 -4.5151 40 1 5.3441 -9.3583 -3.2375 41 1 6.0415 -4.0154 -1.7485 42 1 5.4942 -3.5510 -3.3822 43 1 1.1288 -3.0171 0.5678 44 1 2.9006 -3.2661 0.7199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:54 Heat of formation + Delta-G solvation = -114.035762 kcal Electronic energy + Delta-G solvation = -28871.484317 eV Core-core repulsion = 24914.663779 eV Total energy + Delta-G solvation = -3956.820538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05421 -40.88600 -39.10604 -38.17513 -36.23602 -35.22094 -34.25641 -31.70963 -31.36078 -30.75497 -30.03340 -27.38957 -26.50059 -25.63821 -23.93840 -22.55806 -21.83152 -21.07760 -19.88628 -19.23256 -18.79232 -18.50828 -17.24666 -17.07589 -16.98668 -16.83948 -16.22837 -16.09771 -15.85171 -15.65396 -15.31347 -14.84551 -14.77631 -14.48852 -14.41490 -14.06111 -13.90747 -13.85308 -13.57027 -13.39272 -13.31362 -13.25546 -13.16589 -12.91617 -12.70872 -12.50721 -12.29575 -12.10321 -12.04425 -12.01106 -11.45148 -11.36974 -11.20971 -11.01451 -10.67903 -10.20363 -10.00859 -9.77086 -8.90469 -8.28238 -6.42738 0.48808 0.86324 1.08102 1.36366 1.37910 1.42653 1.52347 1.59046 1.90829 2.37002 2.90995 2.97132 3.18593 3.22402 3.48766 3.72571 3.76709 3.82026 3.88883 3.90722 4.12437 4.24579 4.26103 4.31554 4.36256 4.49052 4.52548 4.58655 4.72484 4.77056 4.81564 4.91325 4.99729 5.03435 5.08719 5.14077 5.24884 5.40883 5.49249 5.72273 5.85275 6.03350 6.41882 6.60243 6.83607 6.94250 7.27194 7.36419 8.78016 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.003142 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.217436 B = 8909.820029 C = 9271.247926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.175 3.825 3 C -0.103 4.103 4 C -0.128 4.128 5 C 0.532 3.468 6 O -0.572 6.572 7 N -0.619 5.619 8 C 0.146 3.854 9 H 0.119 0.881 10 C 0.508 3.492 11 O -0.573 6.573 12 N -0.609 5.609 13 C 0.098 3.902 14 C -0.121 4.121 15 C 0.236 3.764 16 O -0.595 6.595 17 C -0.565 4.565 18 H 0.047 0.953 19 C 0.041 3.959 20 N -0.902 5.902 21 Si 0.958 3.042 22 H -0.279 1.279 23 H -0.271 1.271 24 H -0.278 1.278 25 C 0.132 3.868 26 C -0.061 4.061 27 S -0.272 6.272 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.381 0.619 40 H 0.273 0.727 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.158 0.842 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 14.340 11.029 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 C -0.142 4.142 4 C -0.169 4.169 5 C 0.323 3.677 6 O -0.449 6.449 7 N -0.357 5.357 8 C 0.038 3.962 9 H 0.136 0.864 10 C 0.295 3.705 11 O -0.452 6.452 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.159 4.159 15 C 0.196 3.804 16 O -0.404 6.404 17 C -0.603 4.603 18 H 0.066 0.934 19 C -0.161 4.161 20 N -0.541 5.541 21 Si 0.784 3.216 22 H -0.204 1.204 23 H -0.197 1.197 24 H -0.204 1.204 25 C 0.009 3.991 26 C -0.209 4.209 27 S -0.042 6.042 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.231 0.769 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.176 0.824 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.572 15.367 11.465 24.700 hybrid contribution 1.217 -1.979 -1.446 2.737 sum -14.355 13.387 10.019 22.038 Atomic orbital electron populations 1.22168 0.87372 1.04493 1.05278 1.24824 0.98283 0.96087 0.82784 1.22698 1.03492 0.92731 0.95264 1.22468 1.07792 0.91129 0.95497 1.22231 0.73078 0.88378 0.84046 1.90713 1.49625 1.85615 1.18947 1.49700 1.63039 1.05294 1.17676 1.21185 0.93260 0.82172 0.99576 0.86399 1.21029 0.91564 0.80473 0.77397 1.90653 1.49012 1.49302 1.56233 1.48676 1.14611 1.10818 1.60078 1.22673 0.92047 0.84821 1.02773 1.23057 0.96523 0.95850 1.00496 1.19597 0.92958 0.88214 0.79637 1.86144 1.92384 1.33858 1.27974 1.21697 0.99351 0.93048 1.46184 0.93425 1.25540 0.99189 0.97859 0.93486 1.69745 1.29224 1.09820 1.45271 0.85510 0.79666 0.78316 0.78111 1.20392 1.19658 1.20402 1.21772 0.85499 0.95879 0.95987 1.24613 1.09638 0.97839 0.88854 1.88400 1.83611 1.06378 1.25838 0.91101 0.87309 0.89774 0.90108 0.83925 0.86739 0.83593 0.91179 0.87256 0.91820 0.89750 0.76946 0.91763 0.92360 0.95030 0.82393 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.33 71.98 0.67 -0.53 16 2 C 0.17 2.93 0.88 44.89 0.04 2.97 16 3 C -0.10 -1.35 6.34 31.49 0.20 -1.15 16 4 C -0.13 -2.10 6.80 30.62 0.21 -1.89 16 5 C 0.53 15.85 7.77 87.63 0.68 16.53 16 6 O -0.57 -23.57 18.03 -3.04 -0.05 -23.63 16 7 N -0.62 -16.27 2.70 -753.47 -2.04 -18.30 16 8 C 0.15 3.94 2.97 44.68 0.13 4.08 16 9 H 0.12 2.81 7.52 -2.39 -0.02 2.79 16 10 C 0.51 19.80 6.63 87.66 0.58 20.38 16 11 O -0.57 -27.24 16.58 -3.03 -0.05 -27.29 16 12 N -0.61 -24.53 3.33 -811.79 -2.70 -27.23 16 13 C 0.10 3.27 6.26 86.85 0.54 3.81 16 14 C -0.12 -4.98 5.47 31.98 0.17 -4.80 16 15 C 0.24 11.64 0.84 -10.35 -0.01 11.63 16 16 O -0.59 -30.84 13.08 -148.98 -1.95 -32.79 16 17 C -0.56 -30.30 8.22 25.60 0.21 -30.09 16 18 H 0.05 2.64 7.57 -2.91 -0.02 2.62 16 19 C 0.04 2.10 5.28 84.65 0.45 2.55 16 20 N -0.90 -45.28 10.69 21.44 0.23 -45.05 16 21 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.13 6.39 6.22 86.73 0.54 6.93 16 26 C -0.06 -1.19 6.32 72.46 0.46 -0.73 16 27 S -0.27 -5.63 22.32 -56.49 -1.26 -6.89 16 28 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 32 H 0.14 0.64 8.01 -2.39 -0.02 0.62 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.11 2.56 7.12 -2.38 -0.02 2.55 16 37 H 0.06 2.67 8.04 -2.38 -0.02 2.65 16 38 H 0.08 3.58 7.54 -2.39 -0.02 3.56 16 39 H 0.38 19.40 7.49 -74.06 -0.55 18.84 16 40 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 41 H 0.06 2.93 7.66 -2.38 -0.02 2.91 16 42 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 43 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.12 2.55 7.73 -2.39 -0.02 2.53 16 Total: -1.00 -77.77 366.81 -0.45 -78.22 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.47 Total: 29.83 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 4.88 Total: 29.69 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -4.51 Total: -90.59 kcal Atomic # 8 Polarization: -81.65 SS G_CDS: -2.05 Total: -83.70 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.26 Total: -6.89 kcal Total: -77.77 -0.45 -78.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.821 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds