Wall clock time and date at job start Sat Apr 11 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48505 * 109.47014 * 269.99628 * 3 2 1 5 5 H 1.48496 * 109.47045 * 29.99414 * 3 2 1 6 6 H 1.48497 * 109.47360 * 150.00186 * 3 2 1 7 7 C 1.39952 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00463 * 168.39275 * 7 2 1 9 9 C 1.41392 * 119.99728 * 348.39108 * 7 2 1 10 10 C 1.40733 * 120.24575 * 331.64954 * 9 7 2 11 11 C 1.37599 * 119.74399 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.25379 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49390 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25522 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.13045 * 180.02562 * 14 13 12 16 16 O 1.42101 * 106.40198 * 359.38662 * 15 14 13 17 17 O 1.42099 * 106.40192 * 132.30427 * 15 14 13 18 18 N 1.65597 * 107.21853 * 245.84464 * 15 14 13 19 19 C 1.46499 * 119.99630 * 62.74837 * 18 15 14 20 20 C 1.53003 * 109.46994 * 165.86406 * 19 18 15 21 21 H 1.08996 * 109.52696 * 305.00109 * 20 19 18 22 22 C 1.54281 * 109.52723 * 184.85624 * 20 19 18 23 23 N 1.40440 * 111.67792 * 162.88924 * 22 20 19 24 24 C 1.47637 * 114.32074 * 61.81319 * 23 22 20 25 25 C 1.50896 * 108.76228 * 279.98328 * 24 23 22 26 26 C 1.53619 * 111.71086 * 91.01912 * 25 24 23 27 27 O 1.40632 * 109.52535 * 65.13784 * 20 19 18 28 28 H 0.97000 * 119.99560 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12836 * 359.95561 * 10 9 7 30 30 H 1.08003 * 119.87467 * 179.72114 * 11 10 9 31 31 H 1.07991 * 119.75314 * 180.02562 * 12 11 10 32 32 H 1.08006 * 119.87476 * 180.02562 * 13 12 11 33 33 H 0.96993 * 120.00300 * 242.74528 * 18 15 14 34 34 H 1.09006 * 109.47125 * 285.86167 * 19 18 15 35 35 H 1.08995 * 109.47526 * 45.86637 * 19 18 15 36 36 H 1.08995 * 109.04106 * 283.45443 * 22 20 19 37 37 H 1.09002 * 109.03556 * 42.32997 * 22 20 19 38 38 H 1.00902 * 110.99873 * 188.30698 * 23 22 20 39 39 H 1.08992 * 109.58794 * 39.76765 * 24 23 22 40 40 H 1.09000 * 109.58504 * 160.05357 * 24 23 22 41 41 H 1.09005 * 109.02728 * 211.58961 * 25 24 23 42 42 H 1.09000 * 109.03278 * 330.44085 * 25 24 23 43 43 H 1.08996 * 108.86680 * 79.42708 * 26 25 24 44 44 H 1.09000 * 108.86491 * 197.94529 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0714 -1.2218 -0.1876 9 6 1.3227 -2.4238 0.2475 10 6 0.1626 -2.4325 1.0442 11 6 -0.4965 -3.6177 1.2774 12 6 -0.0216 -4.8004 0.7313 13 6 1.1206 -4.8037 -0.0540 14 6 1.7961 -3.6301 -0.3006 15 16 3.2473 -3.6381 -1.2999 16 8 3.4640 -4.9895 -1.6819 17 8 3.0952 -2.5805 -2.2367 18 7 4.5172 -3.2187 -0.3233 19 6 4.8825 -4.0720 0.8101 20 6 6.2664 -3.6711 1.3250 21 1 6.9843 -3.7068 0.5057 22 6 6.7047 -4.6457 2.4378 23 7 8.0871 -4.5741 2.6752 24 6 8.5567 -3.2536 3.1394 25 6 8.6879 -2.3385 1.9468 26 6 7.3924 -1.5550 1.6865 27 8 6.2138 -2.3665 1.8475 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2087 -1.5126 1.4711 30 1 -1.3845 -3.6275 1.8922 31 1 -0.5455 -5.7258 0.9192 32 1 1.4815 -5.7307 -0.4747 33 1 5.0192 -2.4082 -0.5018 34 1 4.1490 -3.9507 1.6074 35 1 4.9018 -5.1135 0.4895 36 1 6.1729 -4.3987 3.3566 37 1 6.4471 -5.6626 2.1417 38 1 8.3843 -5.3051 3.3041 39 1 7.8365 -2.8362 3.8429 40 1 9.5249 -3.3613 3.6284 41 1 9.4995 -1.6335 2.1274 42 1 8.9260 -2.9345 1.0658 43 1 7.3416 -0.7169 2.3815 44 1 7.4138 -1.1670 0.6681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601341290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:21 Heat of formation + Delta-G solvation = -99.301642 kcal Electronic energy + Delta-G solvation = -28795.055174 eV Core-core repulsion = 24838.873555 eV Total energy + Delta-G solvation = -3956.181619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67676 -37.54619 -36.20011 -35.80448 -34.87061 -34.78744 -33.84187 -32.42470 -30.18373 -29.51699 -28.65025 -26.44819 -25.49906 -23.80744 -21.64185 -21.25987 -21.09194 -20.53369 -18.53429 -17.66985 -17.36844 -16.91061 -16.66559 -16.02221 -15.68296 -15.34132 -15.23325 -14.71169 -14.64155 -14.32142 -13.90422 -13.61656 -13.25271 -13.11271 -12.92458 -12.85883 -12.71888 -12.33148 -11.85937 -11.54802 -11.50127 -11.40505 -11.37064 -11.22037 -11.13522 -11.06839 -10.97353 -10.83354 -10.63411 -10.48545 -10.43653 -9.86525 -9.47616 -9.40080 -9.37871 -8.73644 -8.57085 -7.99311 -7.56010 -6.98959 -4.70661 1.57858 2.38243 2.77313 2.99420 3.04370 3.15939 3.67281 3.81682 3.89033 4.10759 4.45243 4.60526 4.76658 4.82330 4.87616 5.00389 5.13263 5.20466 5.34054 5.39241 5.45891 5.56993 5.63013 5.71184 5.74982 5.82595 5.91272 5.99659 6.07756 6.11018 6.27600 6.37255 6.46062 6.82209 6.95390 6.99788 7.13073 7.22249 7.35510 7.45403 7.52838 7.59476 7.72729 7.85055 7.94437 8.34086 8.55103 8.69618 9.93839 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.004853 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.530787 B = 5768.598597 C = 6997.151250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.080 3.920 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.440 4.440 8 H 0.088 0.912 9 C 0.187 3.813 10 C -0.157 4.157 11 C -0.077 4.077 12 C -0.252 4.252 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.700 3.300 16 O -0.999 6.999 17 O -0.965 6.965 18 N -1.117 6.117 19 C 0.129 3.871 20 C 0.092 3.908 21 H 0.073 0.927 22 C 0.049 3.951 23 N -0.703 5.703 24 C 0.065 3.935 25 C -0.156 4.156 26 C 0.060 3.940 27 O -0.373 6.373 28 H 0.287 0.713 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.347 0.653 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.522 -2.652 7.138 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.182 3.818 10 C -0.177 4.177 11 C -0.096 4.096 12 C -0.272 4.272 13 C -0.023 4.023 14 C -0.871 4.871 15 S 2.798 3.202 16 O -0.990 6.990 17 O -0.955 6.955 18 N -0.874 5.874 19 C 0.002 3.998 20 C 0.032 3.968 21 H 0.091 0.909 22 C -0.083 4.083 23 N -0.335 5.335 24 C -0.063 4.063 25 C -0.195 4.195 26 C -0.016 4.016 27 O -0.292 6.292 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.245 0.755 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.167 0.833 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.265 -2.636 5.709 14.680 hybrid contribution -0.122 1.086 1.376 1.757 sum 13.144 -1.549 7.085 15.012 Atomic orbital electron populations 1.69785 1.07775 1.30049 1.32476 1.25956 0.94865 1.01871 0.91398 0.86184 0.80674 0.79543 0.79864 1.18736 1.19878 1.17812 1.19866 0.96791 0.90743 1.39392 0.89361 1.16994 0.90184 0.89728 0.84878 1.21513 0.98170 0.96805 1.01218 1.20892 0.97517 0.93519 0.97714 1.20472 1.01108 0.96909 1.08713 1.20245 0.93628 0.95085 0.93345 1.29829 1.25545 1.00723 1.31026 1.01064 0.73244 0.72406 0.73474 1.93441 1.86156 1.37405 1.81978 1.93544 1.85917 1.56323 1.59718 1.55542 1.50762 1.36296 1.44814 1.21200 0.95437 0.94045 0.89138 1.22166 0.96750 0.82843 0.95059 0.90911 1.21401 0.88025 1.00402 0.98442 1.57569 1.15830 1.05960 1.54152 1.21601 0.99802 0.88956 0.95970 1.22069 0.98208 0.99087 1.00105 1.22956 0.84401 0.92998 1.01273 1.87583 1.36611 1.24752 1.80228 0.90210 0.85760 0.88901 0.88809 0.87467 0.75546 0.90794 0.89635 0.94924 0.89774 0.83274 0.93657 0.90974 0.90639 0.90373 0.89528 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 10.86 55.55 0.60 -18.80 16 2 C 0.08 1.96 5.24 -17.34 -0.09 1.87 16 3 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.44 -11.24 7.63 -37.74 -0.29 -11.53 16 8 H 0.09 2.14 5.84 -52.49 -0.31 1.83 16 9 C 0.19 4.83 5.55 -106.83 -0.59 4.24 16 10 C -0.16 -3.94 8.66 -38.87 -0.34 -4.28 16 11 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 12 C -0.25 -5.55 10.05 -39.29 -0.39 -5.95 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.78 -18.77 5.90 -38.87 -0.23 -19.00 16 15 S 2.70 59.87 4.96 -107.50 -0.53 59.34 16 16 O -1.00 -22.81 16.53 -57.17 -0.95 -23.75 16 17 O -0.96 -24.34 16.49 -57.17 -0.94 -25.29 16 18 N -1.12 -20.12 5.12 -10.61 -0.05 -20.18 16 19 C 0.13 2.01 5.82 -4.04 -0.02 1.98 16 20 C 0.09 1.22 2.31 -26.06 -0.06 1.16 16 21 H 0.07 0.94 7.11 -51.93 -0.37 0.57 16 22 C 0.05 0.54 5.59 -6.50 -0.04 0.50 16 23 N -0.70 -6.64 6.21 -118.16 -0.73 -7.38 16 24 C 0.07 0.58 6.21 -4.48 -0.03 0.55 16 25 C -0.16 -1.43 5.41 -27.47 -0.15 -1.58 16 26 C 0.06 0.67 6.72 37.48 0.25 0.93 16 27 O -0.37 -5.35 9.56 -34.28 -0.33 -5.67 16 28 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 29 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.11 2.26 7.32 -52.48 -0.38 1.87 16 33 H 0.41 6.89 8.36 -34.47 -0.29 6.60 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.23 7.74 -51.93 -0.40 0.83 16 36 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 38 H 0.35 2.57 8.86 -39.29 -0.35 2.23 16 39 H 0.05 0.46 7.64 -51.93 -0.40 0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.78 7.39 -51.93 -0.38 0.40 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -31.50 362.92 -11.38 -42.88 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.13 Total: 13.73 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -2.75 Total: -33.71 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.19 Total: -46.35 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -2.22 Total: -54.71 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 59.87 SS G_CDS: -0.53 Total: 59.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.50 -11.38 -42.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.426 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds