Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48505 * 109.47014 * 269.99628 * 3 2 1 5 5 H 1.48496 * 109.47045 * 29.99414 * 3 2 1 6 6 H 1.48497 * 109.47360 * 150.00186 * 3 2 1 7 7 C 1.39952 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00463 * 168.39275 * 7 2 1 9 9 C 1.41392 * 119.99728 * 348.39108 * 7 2 1 10 10 C 1.40733 * 120.24575 * 331.64954 * 9 7 2 11 11 C 1.37599 * 119.74399 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.25379 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49390 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25522 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.13045 * 180.02562 * 14 13 12 16 16 O 1.42101 * 106.40198 * 359.38662 * 15 14 13 17 17 O 1.42099 * 106.40192 * 132.30427 * 15 14 13 18 18 N 1.65597 * 107.21853 * 245.84464 * 15 14 13 19 19 C 1.46499 * 119.99630 * 62.74837 * 18 15 14 20 20 C 1.53003 * 109.46994 * 165.86406 * 19 18 15 21 21 H 1.08996 * 109.52696 * 305.00109 * 20 19 18 22 22 C 1.54281 * 109.52723 * 184.85624 * 20 19 18 23 23 N 1.40440 * 111.67792 * 162.88924 * 22 20 19 24 24 C 1.47637 * 114.32074 * 61.81319 * 23 22 20 25 25 C 1.50896 * 108.76228 * 279.98328 * 24 23 22 26 26 C 1.53619 * 111.71086 * 91.01912 * 25 24 23 27 27 O 1.40632 * 109.52535 * 65.13784 * 20 19 18 28 28 H 0.97000 * 119.99560 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12836 * 359.95561 * 10 9 7 30 30 H 1.08003 * 119.87467 * 179.72114 * 11 10 9 31 31 H 1.07991 * 119.75314 * 180.02562 * 12 11 10 32 32 H 1.08006 * 119.87476 * 180.02562 * 13 12 11 33 33 H 0.96993 * 120.00300 * 242.74528 * 18 15 14 34 34 H 1.09006 * 109.47125 * 285.86167 * 19 18 15 35 35 H 1.08995 * 109.47526 * 45.86637 * 19 18 15 36 36 H 1.08995 * 109.04106 * 283.45443 * 22 20 19 37 37 H 1.09002 * 109.03556 * 42.32997 * 22 20 19 38 38 H 1.00902 * 110.99873 * 188.30698 * 23 22 20 39 39 H 1.08992 * 109.58794 * 39.76765 * 24 23 22 40 40 H 1.09000 * 109.58504 * 160.05357 * 24 23 22 41 41 H 1.09005 * 109.02728 * 211.58961 * 25 24 23 42 42 H 1.09000 * 109.03278 * 330.44085 * 25 24 23 43 43 H 1.08996 * 108.86680 * 79.42708 * 26 25 24 44 44 H 1.09000 * 108.86491 * 197.94529 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0714 -1.2218 -0.1876 9 6 1.3227 -2.4238 0.2475 10 6 0.1626 -2.4325 1.0442 11 6 -0.4965 -3.6177 1.2774 12 6 -0.0216 -4.8004 0.7313 13 6 1.1206 -4.8037 -0.0540 14 6 1.7961 -3.6301 -0.3006 15 16 3.2473 -3.6381 -1.2999 16 8 3.4640 -4.9895 -1.6819 17 8 3.0952 -2.5805 -2.2367 18 7 4.5172 -3.2187 -0.3233 19 6 4.8825 -4.0720 0.8101 20 6 6.2664 -3.6711 1.3250 21 1 6.9843 -3.7068 0.5057 22 6 6.7047 -4.6457 2.4378 23 7 8.0871 -4.5741 2.6752 24 6 8.5567 -3.2536 3.1394 25 6 8.6879 -2.3385 1.9468 26 6 7.3924 -1.5550 1.6865 27 8 6.2138 -2.3665 1.8475 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2087 -1.5126 1.4711 30 1 -1.3845 -3.6275 1.8922 31 1 -0.5455 -5.7258 0.9192 32 1 1.4815 -5.7307 -0.4747 33 1 5.0192 -2.4082 -0.5018 34 1 4.1490 -3.9507 1.6074 35 1 4.9018 -5.1135 0.4895 36 1 6.1729 -4.3987 3.3566 37 1 6.4471 -5.6626 2.1417 38 1 8.3843 -5.3051 3.3041 39 1 7.8365 -2.8362 3.8429 40 1 9.5249 -3.3613 3.6284 41 1 9.4995 -1.6335 2.1274 42 1 8.9260 -2.9345 1.0658 43 1 7.3416 -0.7169 2.3815 44 1 7.4138 -1.1670 0.6681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601341290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -123.183738 kcal Electronic energy + Delta-G solvation = -28796.090779 eV Core-core repulsion = 24838.873555 eV Total energy + Delta-G solvation = -3957.217224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61018 -39.36519 -38.03871 -36.75592 -36.66333 -36.07781 -35.64574 -33.39505 -32.01150 -31.34487 -29.71873 -27.36931 -27.26927 -24.92309 -23.43759 -22.93054 -22.17190 -21.41505 -20.20363 -19.50130 -18.57744 -18.22943 -18.00278 -17.46058 -17.19567 -16.92470 -16.13137 -16.06187 -16.01134 -15.56635 -15.30712 -15.04624 -14.94052 -14.64702 -14.47281 -14.07312 -13.72006 -13.63853 -13.26809 -13.22900 -13.00518 -12.94575 -12.90042 -12.84286 -12.78533 -12.48324 -12.33030 -12.23035 -12.13972 -11.80242 -11.64944 -11.38233 -11.18566 -11.13294 -10.42864 -10.26544 -9.82680 -9.41867 -9.35114 -8.79258 -6.59841 -0.16436 0.54319 0.98419 1.34638 1.46836 1.52028 2.15614 2.32721 2.63817 2.71689 2.98662 3.30402 3.49531 3.72881 3.88476 3.93903 4.01525 4.12104 4.19914 4.34575 4.35424 4.46476 4.51363 4.61539 4.68953 4.72333 4.74286 4.80215 4.88138 4.98806 5.01882 5.08959 5.14796 5.16271 5.27365 5.31620 5.53486 5.71728 5.83881 6.01715 6.09667 6.17510 6.18558 6.48992 6.50566 6.56929 6.68671 6.84743 8.16689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.004853 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.530787 B = 5768.598597 C = 6997.151250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.247 1.247 7 C -0.471 4.471 8 H 0.091 0.909 9 C 0.162 3.838 10 C -0.187 4.187 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.015 4.015 14 C -0.792 4.792 15 S 2.721 3.279 16 O -1.006 7.006 17 O -1.000 7.000 18 N -1.107 6.107 19 C 0.123 3.877 20 C 0.097 3.903 21 H 0.076 0.924 22 C 0.056 3.944 23 N -0.704 5.704 24 C 0.064 3.936 25 C -0.150 4.150 26 C 0.051 3.949 27 O -0.399 6.399 28 H 0.295 0.705 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.023 0.977 37 H 0.096 0.904 38 H 0.361 0.639 39 H 0.032 0.968 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.026 -3.175 8.067 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.170 1.170 7 C -0.499 4.499 8 H 0.109 0.891 9 C 0.157 3.843 10 C -0.207 4.207 11 C -0.095 4.095 12 C -0.271 4.271 13 C -0.035 4.035 14 C -0.887 4.887 15 S 2.817 3.183 16 O -0.996 6.996 17 O -0.990 6.990 18 N -0.866 5.866 19 C -0.004 4.004 20 C 0.036 3.964 21 H 0.094 0.906 22 C -0.076 4.076 23 N -0.338 5.338 24 C -0.064 4.064 25 C -0.188 4.188 26 C -0.025 4.025 27 O -0.319 6.319 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.252 0.748 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.115 0.885 38 H 0.183 0.817 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.758 -3.177 6.658 16.499 hybrid contribution -0.602 1.136 1.106 1.696 sum 14.156 -2.041 7.764 16.274 Atomic orbital electron populations 1.69819 1.08935 1.31295 1.33155 1.26798 0.95666 1.04792 0.90702 0.85317 0.79900 0.75741 0.79748 1.19034 1.18156 1.16955 1.20121 0.97169 0.91635 1.40968 0.89142 1.17310 0.90910 0.90562 0.85487 1.21566 0.99153 0.97465 1.02472 1.21251 0.97967 0.92946 0.97287 1.20895 1.00649 0.98030 1.07478 1.20593 0.93968 0.95373 0.93552 1.30142 1.26852 1.00837 1.30831 1.00332 0.73186 0.71690 0.73073 1.93421 1.86284 1.37648 1.82282 1.93489 1.86596 1.57452 1.61463 1.55178 1.49321 1.36979 1.45151 1.21437 0.96775 0.94301 0.87895 1.22117 0.95046 0.83221 0.95970 0.90575 1.21278 0.88946 1.00255 0.97109 1.57548 1.14660 1.06803 1.54740 1.21671 1.00614 0.88505 0.95654 1.22033 0.97568 0.99316 0.99896 1.23166 0.84581 0.93211 1.01536 1.87540 1.38563 1.25358 1.80439 0.89421 0.86891 0.86005 0.85361 0.85716 0.74775 0.91991 0.88381 0.95910 0.88548 0.81715 0.94961 0.88556 0.88334 0.91080 0.88829 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.24 10.86 21.83 0.24 -41.00 16 2 C 0.04 1.90 5.24 85.26 0.45 2.35 16 3 Si 0.97 37.83 29.58 68.60 2.03 39.86 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.47 -24.70 7.63 23.46 0.18 -24.52 16 8 H 0.09 4.51 5.84 -2.91 -0.02 4.49 16 9 C 0.16 8.55 5.55 -21.29 -0.12 8.44 16 10 C -0.19 -9.53 8.66 22.73 0.20 -9.33 16 11 C -0.08 -3.38 10.02 22.22 0.22 -3.16 16 12 C -0.25 -10.63 10.05 22.46 0.23 -10.40 16 13 C -0.02 -0.68 9.53 22.22 0.21 -0.47 16 14 C -0.79 -38.69 5.90 22.73 0.13 -38.56 16 15 S 2.72 121.49 4.96 -56.49 -0.28 121.21 16 16 O -1.01 -45.39 16.53 -128.00 -2.12 -47.50 16 17 O -1.00 -51.45 16.49 -128.00 -2.11 -53.56 16 18 N -1.11 -39.98 5.12 -187.48 -0.96 -40.94 16 19 C 0.12 3.76 5.82 86.38 0.50 4.27 16 20 C 0.10 2.48 2.31 31.03 0.07 2.55 16 21 H 0.08 1.88 7.11 -2.39 -0.02 1.87 16 22 C 0.06 1.16 5.59 87.91 0.49 1.65 16 23 N -0.70 -11.79 6.21 -527.76 -3.28 -15.07 16 24 C 0.06 0.99 6.21 85.48 0.53 1.53 16 25 C -0.15 -2.43 5.41 30.12 0.16 -2.27 16 26 C 0.05 1.09 6.72 72.19 0.48 1.57 16 27 O -0.40 -11.28 9.56 -145.59 -1.39 -12.67 16 28 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 29 H 0.11 5.91 6.22 -2.91 -0.02 5.90 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.13 4.50 8.06 -2.92 -0.02 4.48 16 32 H 0.13 5.07 7.32 -2.91 -0.02 5.05 16 33 H 0.42 14.10 8.36 -96.75 -0.81 13.29 16 34 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.10 2.73 7.74 -2.39 -0.02 2.72 16 36 H 0.02 0.52 8.09 -2.39 -0.02 0.50 16 37 H 0.10 1.72 7.96 -2.39 -0.02 1.71 16 38 H 0.36 4.45 8.86 -89.69 -0.79 3.65 16 39 H 0.03 0.60 7.64 -2.39 -0.02 0.58 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.07 1.27 7.39 -2.39 -0.02 1.26 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.13 362.92 -4.69 -72.82 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -0.56 Total: 43.22 kcal Atomic # 6 Polarization: -70.10 SS G_CDS: 3.74 Total: -66.36 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.00 Total: -97.01 kcal Atomic # 8 Polarization: -108.12 SS G_CDS: -5.62 Total: -113.74 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 16 Polarization: 121.49 SS G_CDS: -0.28 Total: 121.21 kcal Total: -68.13 -4.69 -72.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.364 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds