Wall clock time and date at job start Sat Apr 11 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48505 * 109.47213 * 270.00218 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99967 * 3 2 1 6 6 H 1.48495 * 109.47336 * 150.00212 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36435 * 119.81299 * 180.22570 * 10 9 7 12 12 C 1.39311 * 120.18622 * 359.50279 * 11 10 9 13 13 O 1.35678 * 119.81979 * 180.27881 * 12 11 10 14 14 C 1.42895 * 117.00071 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47226 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47066 * 54.99787 * 15 14 13 17 17 O 1.42899 * 109.47337 * 294.99828 * 15 14 13 18 18 C 1.53004 * 109.47315 * 174.99876 * 15 14 13 19 19 N 1.46497 * 109.46983 * 185.00353 * 18 15 14 20 20 C 1.36003 * 126.31213 * 265.02009 * 19 18 15 21 21 N 1.30192 * 110.13907 * 179.97438 * 20 19 18 22 22 C 1.35597 * 109.62018 * 0.02562 * 21 20 19 23 23 N 1.33079 * 133.58325 * 179.97438 * 22 21 20 24 24 C 1.31893 * 119.77051 * 179.97438 * 23 22 21 25 25 C 1.38674 * 120.51829 * 359.97438 * 24 23 22 26 26 N 1.32069 * 120.43576 * 0.02562 * 25 24 23 27 27 C 1.32327 * 119.80335 * 359.71182 * 26 25 24 28 28 C 1.39316 * 120.36229 * 0.24797 * 12 11 10 29 29 C 1.36432 * 120.18796 * 0.02562 * 28 12 11 30 30 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.09526 * 0.02562 * 10 9 7 32 32 H 1.08006 * 119.90500 * 179.77382 * 11 10 9 33 33 H 1.09004 * 109.46908 * 299.99696 * 14 13 12 34 34 H 1.09003 * 109.47073 * 59.99459 * 14 13 12 35 35 H 0.96702 * 113.99666 * 300.00615 * 17 15 14 36 36 H 1.09004 * 109.46916 * 304.99924 * 18 15 14 37 37 H 1.08992 * 109.46888 * 64.99876 * 18 15 14 38 38 H 1.07997 * 124.93053 * 359.94612 * 20 19 18 39 39 H 1.08005 * 119.74316 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.78774 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.90432 * 180.02562 * 28 12 11 42 42 H 1.07996 * 120.09717 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5680 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4675 14 6 -0.0195 -7.1116 -0.9613 15 6 -0.8556 -8.2876 -1.4701 16 1 -0.9070 -8.2529 -2.5584 17 8 -2.1751 -8.2038 -0.9280 18 6 -0.2067 -9.6021 -1.0319 19 7 -0.9388 -10.7274 -1.6184 20 6 -1.9348 -11.4377 -1.0241 21 7 -2.3637 -12.3674 -1.8282 22 6 -1.6714 -12.3169 -2.9931 23 7 -1.7152 -13.0266 -4.1179 24 6 -0.8943 -12.7356 -5.1083 25 6 0.0144 -11.6951 -4.9872 26 7 0.0702 -10.9814 -3.8773 27 6 -0.7500 -11.2571 -2.8762 28 6 1.1892 -4.7967 -0.2797 29 6 1.8277 -3.6481 0.0870 30 1 -0.4851 0.8400 -0.0004 31 1 -0.1438 -1.4106 -1.5771 32 1 -1.2745 -3.4833 -2.2098 33 1 1.0099 -7.2229 -1.3020 34 1 -0.0418 -7.0950 0.1284 35 1 -2.2056 -8.2289 0.0382 36 1 0.8291 -9.6266 -1.3705 37 1 -0.2355 -9.6768 0.0551 38 1 -2.3144 -11.2570 -0.0293 39 1 -0.9305 -13.3116 -6.0212 40 1 0.6809 -11.4667 -5.8058 41 1 1.5524 -5.7507 0.0728 42 1 2.6955 -3.6920 0.7284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601963594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:36 Heat of formation + Delta-G solvation = 44.828551 kcal Electronic energy + Delta-G solvation = -27513.498136 eV Core-core repulsion = 23460.415271 eV Total energy + Delta-G solvation = -4053.082865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.98633 -39.70276 -39.11272 -37.75021 -36.22389 -35.16728 -33.55114 -33.38986 -30.82852 -30.44040 -29.69281 -29.06938 -26.68536 -25.29476 -24.74732 -23.94063 -22.64275 -21.36540 -20.84039 -20.68023 -18.76614 -18.64053 -17.44581 -17.34790 -16.81062 -16.75980 -16.37427 -16.10956 -15.40427 -15.30172 -14.85505 -14.44227 -14.32248 -14.07206 -14.03833 -13.96087 -13.24404 -12.95691 -12.67650 -12.41971 -12.34442 -12.23522 -11.95537 -11.90207 -11.55084 -11.33000 -11.22555 -11.18587 -10.96089 -10.71070 -10.48904 -10.07297 -9.90117 -9.45753 -9.41406 -9.13268 -9.11595 -9.09966 -7.72790 -7.12086 -6.78961 -4.32864 0.28096 0.67985 1.74413 2.28196 2.70981 2.87074 3.04744 3.07806 3.15576 3.21645 3.42403 3.48784 3.72256 3.87165 3.90132 4.04581 4.25710 4.37881 4.54439 4.55917 4.61496 4.72394 4.81397 4.90107 4.98989 5.18533 5.39244 5.42963 5.59145 5.72934 5.93590 5.94731 6.13724 6.31393 6.63301 6.89781 6.90721 7.03076 7.10972 7.15665 7.31227 7.38783 7.47728 7.50439 7.69827 7.93495 8.12682 8.35158 8.57145 8.82957 8.90637 10.15546 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.001849 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.018208 B =15139.086753 C =15468.723421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.013 4.013 13 O -0.316 6.316 14 C 0.043 3.957 15 C 0.096 3.904 16 H 0.112 0.888 17 O -0.544 6.544 18 C 0.082 3.918 19 N -0.468 5.468 20 C 0.315 3.685 21 N -0.482 5.482 22 C 0.208 3.792 23 N -0.401 5.401 24 C 0.064 3.936 25 C 0.079 3.921 26 N -0.429 5.429 27 C 0.190 3.810 28 C -0.166 4.166 29 C -0.200 4.200 30 H 0.281 0.719 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.374 0.626 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.231 0.769 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -19.663 -3.296 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.056 4.056 13 O -0.231 6.231 14 C -0.035 4.035 15 C 0.035 3.965 16 H 0.130 0.870 17 O -0.348 6.348 18 C -0.041 4.041 19 N -0.159 5.159 20 C 0.026 3.974 21 N -0.202 5.202 22 C -0.038 4.038 23 N -0.117 5.117 24 C -0.108 4.108 25 C -0.091 4.091 26 N -0.148 5.148 27 C -0.050 4.050 28 C -0.185 4.185 29 C -0.219 4.219 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.247 0.753 39 H 0.198 0.802 40 H 0.198 0.802 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.059 -19.953 -3.671 20.316 hybrid contribution 1.440 1.395 0.671 2.114 sum 0.381 -18.558 -3.001 18.803 Atomic orbital electron populations 1.69827 1.07524 1.29261 1.35670 1.25899 0.94743 1.01312 0.92332 0.86306 0.80431 0.80617 0.79323 1.19277 1.20342 1.18688 1.19480 0.98061 0.91205 1.40485 0.90479 1.17611 0.91816 0.92149 0.89739 1.20990 0.98483 0.96317 0.99512 1.19839 1.00706 0.90204 1.02808 1.18584 0.97029 0.84583 1.05428 1.85888 1.54419 1.11893 1.70939 1.22943 0.97117 0.85038 0.98380 1.22289 0.83180 0.90210 1.00779 0.86976 1.86726 1.26207 1.96357 1.25545 1.22627 0.97334 0.84269 0.99836 1.45004 1.31764 1.28119 1.10979 1.25711 0.85433 0.86786 0.99500 1.70365 1.26493 1.22540 1.00762 1.20150 0.95600 0.94203 0.93835 1.67554 1.20919 1.25261 0.97937 1.23713 0.92334 0.97058 0.97724 1.23683 0.98461 0.92398 0.94519 1.67143 1.21162 1.27426 0.99042 1.19780 0.98918 0.97171 0.89102 1.20365 0.97823 0.97696 1.02631 1.20555 1.03171 0.92498 1.05709 0.90825 0.85631 0.88445 0.91958 0.92421 0.77893 0.87189 0.87218 0.75324 0.80244 0.80155 0.88986 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.96 55.55 0.61 -19.68 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.00 9.04 -37.83 -0.34 -12.35 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 11 C -0.12 -2.78 9.92 -39.83 -0.40 -3.18 16 12 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 13 O -0.32 -6.11 10.09 -23.59 -0.24 -6.35 16 14 C 0.04 0.57 4.36 37.16 0.16 0.73 16 15 C 0.10 1.04 3.49 -26.73 -0.09 0.95 16 16 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 17 O -0.54 -6.14 13.25 -40.08 -0.53 -6.67 16 18 C 0.08 0.60 5.81 -4.04 -0.02 0.57 16 19 N -0.47 -4.44 2.74 -117.56 -0.32 -4.77 16 20 C 0.32 2.71 12.49 -89.75 -1.12 1.59 16 21 N -0.48 -6.04 11.27 -13.54 -0.15 -6.19 16 22 C 0.21 2.79 8.37 -156.98 -1.31 1.48 16 23 N -0.40 -5.03 10.54 -12.51 -0.13 -5.17 16 24 C 0.06 0.53 11.20 -17.36 -0.19 0.34 16 25 C 0.08 0.65 11.21 -17.29 -0.19 0.46 16 26 N -0.43 -4.92 10.52 -12.12 -0.13 -5.05 16 27 C 0.19 2.32 8.01 -155.59 -1.25 1.07 16 28 C -0.17 -3.56 8.96 -39.83 -0.36 -3.91 16 29 C -0.20 -4.73 9.74 -39.25 -0.38 -5.11 16 30 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 31 H 0.13 3.31 6.17 -52.49 -0.32 2.98 16 32 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 33 H 0.06 0.78 7.65 -51.93 -0.40 0.39 16 34 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 35 H 0.37 2.53 9.05 45.56 0.41 2.95 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.40 8.13 -51.93 -0.42 -0.02 16 38 H 0.23 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.09 1.64 6.27 -52.49 -0.33 1.31 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -35.61 366.63 -11.15 -46.76 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.97 Total: 6.49 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -6.78 Total: -18.21 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.13 Total: -40.85 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.77 Total: -13.02 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.61 -11.15 -46.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601963594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.584 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds