Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48505 * 109.47213 * 270.00218 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99967 * 3 2 1 6 6 H 1.48495 * 109.47336 * 150.00212 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36435 * 119.81299 * 180.22570 * 10 9 7 12 12 C 1.39311 * 120.18622 * 359.50279 * 11 10 9 13 13 O 1.35678 * 119.81979 * 180.27881 * 12 11 10 14 14 C 1.42895 * 117.00071 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47226 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47066 * 54.99787 * 15 14 13 17 17 O 1.42899 * 109.47337 * 294.99828 * 15 14 13 18 18 C 1.53004 * 109.47315 * 174.99876 * 15 14 13 19 19 N 1.46497 * 109.46983 * 185.00353 * 18 15 14 20 20 C 1.36003 * 126.31213 * 265.02009 * 19 18 15 21 21 N 1.30192 * 110.13907 * 179.97438 * 20 19 18 22 22 C 1.35597 * 109.62018 * 0.02562 * 21 20 19 23 23 N 1.33079 * 133.58325 * 179.97438 * 22 21 20 24 24 C 1.31893 * 119.77051 * 179.97438 * 23 22 21 25 25 C 1.38674 * 120.51829 * 359.97438 * 24 23 22 26 26 N 1.32069 * 120.43576 * 0.02562 * 25 24 23 27 27 C 1.32327 * 119.80335 * 359.71182 * 26 25 24 28 28 C 1.39316 * 120.36229 * 0.24797 * 12 11 10 29 29 C 1.36432 * 120.18796 * 0.02562 * 28 12 11 30 30 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.09526 * 0.02562 * 10 9 7 32 32 H 1.08006 * 119.90500 * 179.77382 * 11 10 9 33 33 H 1.09004 * 109.46908 * 299.99696 * 14 13 12 34 34 H 1.09003 * 109.47073 * 59.99459 * 14 13 12 35 35 H 0.96702 * 113.99666 * 300.00615 * 17 15 14 36 36 H 1.09004 * 109.46916 * 304.99924 * 18 15 14 37 37 H 1.08992 * 109.46888 * 64.99876 * 18 15 14 38 38 H 1.07997 * 124.93053 * 359.94612 * 20 19 18 39 39 H 1.08005 * 119.74316 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.78774 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.90432 * 180.02562 * 28 12 11 42 42 H 1.07996 * 120.09717 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5680 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4675 14 6 -0.0195 -7.1116 -0.9613 15 6 -0.8556 -8.2876 -1.4701 16 1 -0.9070 -8.2529 -2.5584 17 8 -2.1751 -8.2038 -0.9280 18 6 -0.2067 -9.6021 -1.0319 19 7 -0.9388 -10.7274 -1.6184 20 6 -1.9348 -11.4377 -1.0241 21 7 -2.3637 -12.3674 -1.8282 22 6 -1.6714 -12.3169 -2.9931 23 7 -1.7152 -13.0266 -4.1179 24 6 -0.8943 -12.7356 -5.1083 25 6 0.0144 -11.6951 -4.9872 26 7 0.0702 -10.9814 -3.8773 27 6 -0.7500 -11.2571 -2.8762 28 6 1.1892 -4.7967 -0.2797 29 6 1.8277 -3.6481 0.0870 30 1 -0.4851 0.8400 -0.0004 31 1 -0.1438 -1.4106 -1.5771 32 1 -1.2745 -3.4833 -2.2098 33 1 1.0099 -7.2229 -1.3020 34 1 -0.0418 -7.0950 0.1284 35 1 -2.2056 -8.2289 0.0382 36 1 0.8291 -9.6266 -1.3705 37 1 -0.2355 -9.6768 0.0551 38 1 -2.3144 -11.2570 -0.0293 39 1 -0.9305 -13.3116 -6.0212 40 1 0.6809 -11.4667 -5.8058 41 1 1.5524 -5.7507 0.0728 42 1 2.6955 -3.6920 0.7284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601963594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = 21.080666 kcal Electronic energy + Delta-G solvation = -27514.527921 eV Core-core repulsion = 23460.415271 eV Total energy + Delta-G solvation = -4054.112651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.68498 -40.73656 -40.25065 -38.92635 -37.71322 -35.91488 -35.19441 -34.28130 -32.05440 -31.28353 -31.11384 -30.77755 -27.69788 -26.48057 -25.95216 -24.71303 -23.71370 -22.59402 -22.31247 -21.99939 -19.51142 -19.40505 -19.25625 -18.61080 -17.83452 -17.52857 -17.33526 -17.08654 -16.84265 -16.08465 -15.98221 -15.73857 -15.57794 -15.24117 -15.02099 -14.69392 -14.65910 -14.10257 -13.99866 -13.92523 -13.54871 -13.34637 -13.14355 -13.03367 -12.81912 -12.72871 -12.64103 -12.42189 -12.17433 -11.96498 -11.72940 -11.60781 -11.45009 -11.14170 -10.89661 -10.21393 -9.87189 -9.81462 -9.56888 -8.93711 -8.60456 -6.23667 -0.40336 -0.03059 0.93965 1.02307 1.09590 1.39557 1.52170 1.52432 1.59882 2.21943 2.41353 2.61550 2.71926 2.74353 2.95121 3.22961 3.31158 3.66070 3.69546 3.70091 3.77110 3.92304 3.95460 4.03536 4.26982 4.31263 4.34768 4.37257 4.43270 4.55754 4.65865 4.85577 4.93729 5.06206 5.21198 5.27462 5.33174 5.57971 5.63108 5.71837 5.86983 6.05454 6.19824 6.25483 6.45761 6.55588 6.74201 6.80361 6.80827 6.94536 7.09224 8.35947 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.001849 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.018208 B =15139.086753 C =15468.723421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.154 4.154 11 C -0.136 4.136 12 C 0.001 3.999 13 O -0.334 6.334 14 C 0.032 3.968 15 C 0.110 3.890 16 H 0.077 0.923 17 O -0.564 6.564 18 C 0.090 3.910 19 N -0.466 5.466 20 C 0.326 3.674 21 N -0.526 5.526 22 C 0.173 3.827 23 N -0.441 5.441 24 C 0.071 3.929 25 C 0.083 3.917 26 N -0.454 5.454 27 C 0.167 3.833 28 C -0.161 4.161 29 C -0.207 4.207 30 H 0.287 0.713 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.113 0.887 37 H 0.158 0.842 38 H 0.279 0.721 39 H 0.222 0.778 40 H 0.222 0.778 41 H 0.137 0.863 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -20.885 -2.555 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.174 4.174 11 C -0.155 4.155 12 C -0.042 4.042 13 O -0.250 6.250 14 C -0.044 4.044 15 C 0.049 3.951 16 H 0.095 0.905 17 O -0.372 6.372 18 C -0.031 4.031 19 N -0.157 5.157 20 C 0.037 3.963 21 N -0.247 5.247 22 C -0.072 4.072 23 N -0.158 5.158 24 C -0.101 4.101 25 C -0.087 4.087 26 N -0.172 5.172 27 C -0.072 4.072 28 C -0.179 4.179 29 C -0.226 4.226 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.245 0.755 36 H 0.132 0.868 37 H 0.176 0.824 38 H 0.294 0.706 39 H 0.238 0.762 40 H 0.238 0.762 41 H 0.154 0.846 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.177 -21.196 -2.893 21.393 hybrid contribution 0.994 1.540 0.333 1.863 sum 1.171 -19.656 -2.560 19.857 Atomic orbital electron populations 1.69890 1.08973 1.30438 1.36534 1.26746 0.95481 1.04538 0.91419 0.85207 0.79099 0.76041 0.79379 1.18928 1.19479 1.18061 1.19722 0.98319 0.92355 1.42345 0.90464 1.17968 0.92596 0.93542 0.90711 1.20885 0.99453 0.96310 1.00727 1.19995 1.01115 0.90952 1.03458 1.18627 0.96560 0.85177 1.03877 1.85875 1.54852 1.12849 1.71444 1.23379 0.98055 0.82935 1.00015 1.22024 0.83061 0.91112 0.98855 0.90508 1.86691 1.26449 1.96450 1.27655 1.22708 0.96559 0.81518 1.02356 1.45161 1.31997 1.28321 1.10220 1.26676 0.84094 0.85136 1.00346 1.70300 1.28092 1.24812 1.01473 1.20487 0.96752 0.95391 0.94528 1.67559 1.22799 1.26557 0.98866 1.24469 0.90809 0.96884 0.97915 1.24451 0.98362 0.91385 0.94502 1.67224 1.21670 1.28455 0.99893 1.20023 0.99289 0.97633 0.90298 1.20715 0.96848 0.98875 1.01503 1.20834 1.03646 0.92493 1.05643 0.90261 0.87520 0.88017 0.90762 0.89732 0.75475 0.86835 0.82392 0.70605 0.76211 0.76154 0.84568 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.63 10.96 21.82 0.24 -43.39 16 2 C 0.03 1.61 5.14 85.24 0.44 2.05 16 3 Si 0.98 37.96 29.60 68.60 2.03 39.99 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.50 -26.44 9.04 23.40 0.21 -26.23 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.05 2.87 5.57 -21.28 -0.12 2.76 16 10 C -0.15 -8.20 8.64 22.48 0.19 -8.01 16 11 C -0.14 -6.61 9.92 22.11 0.22 -6.39 16 12 C 0.00 0.06 6.71 22.79 0.15 0.21 16 13 O -0.33 -12.35 10.09 -85.32 -0.86 -13.21 16 14 C 0.03 0.75 4.36 71.98 0.31 1.07 16 15 C 0.11 2.12 3.49 30.59 0.11 2.23 16 16 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 17 O -0.56 -11.35 13.25 -144.34 -1.91 -13.26 16 18 C 0.09 1.01 5.81 86.38 0.50 1.51 16 19 N -0.47 -7.97 2.74 -525.85 -1.44 -9.42 16 20 C 0.33 4.98 12.49 180.04 2.25 7.22 16 21 N -0.53 -13.08 11.27 -196.75 -2.22 -15.30 16 22 C 0.17 4.68 8.37 134.42 1.13 5.80 16 23 N -0.44 -11.12 10.54 -193.50 -2.04 -13.16 16 24 C 0.07 1.10 11.20 84.79 0.95 2.05 16 25 C 0.08 1.22 11.21 84.76 0.95 2.17 16 26 N -0.45 -9.99 10.52 -192.25 -2.02 -12.01 16 27 C 0.17 3.96 8.01 133.94 1.07 5.03 16 28 C -0.16 -6.50 8.96 22.11 0.20 -6.30 16 29 C -0.21 -9.62 9.74 22.48 0.22 -9.40 16 30 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 31 H 0.11 5.95 6.17 -2.91 -0.02 5.93 16 32 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.07 1.58 7.65 -2.38 -0.02 1.56 16 34 H 0.08 1.56 7.65 -2.39 -0.02 1.54 16 35 H 0.39 3.88 9.05 -74.06 -0.67 3.21 16 36 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.16 0.26 8.13 -2.39 -0.02 0.24 16 38 H 0.28 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.22 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.22 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.14 4.21 6.27 -2.91 -0.02 4.19 16 42 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -83.33 366.63 0.97 -82.36 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.41 Total: 21.61 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 8.78 Total: -24.22 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -7.48 Total: -93.27 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -2.77 Total: -26.47 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -83.33 0.97 -82.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601963594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.439 kcal (2) G-P(sol) polarization free energy of solvation -83.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds