Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37982 * 120.07514 * 2 1 4 4 C 1.38336 * 120.15052 * 180.23556 * 3 2 1 5 5 C 1.38387 * 120.29077 * 359.78253 * 4 3 2 6 6 S 1.76193 * 119.92672 * 179.97438 * 5 4 3 7 7 N 1.65607 * 107.21836 * 269.97539 * 6 5 4 8 8 O 1.42095 * 106.40359 * 23.51970 * 6 5 4 9 9 O 1.42108 * 106.39989 * 156.44086 * 6 5 4 10 10 C 1.37937 * 120.14389 * 359.96030 * 5 4 3 11 11 C 1.39560 * 120.07890 * 179.74226 * 2 1 3 12 12 C 1.47842 * 120.14137 * 0.02562 * 11 2 1 13 13 O 1.21554 * 120.00033 * 304.02750 * 12 11 2 14 14 N 1.34776 * 120.00322 * 124.01947 * 12 11 2 15 15 C 1.46497 * 119.99882 * 354.52120 * 14 12 11 16 16 C 1.50698 * 109.47586 * 89.99273 * 15 14 12 17 17 H 1.08004 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00332 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47142 * 120.00012 * 20 18 16 23 23 H 1.48508 * 109.46777 * 239.99700 * 20 18 16 24 24 C 1.46500 * 120.00141 * 174.51293 * 14 12 11 25 25 C 1.53001 * 109.47136 * 304.73062 * 24 14 12 26 26 C 1.53000 * 109.46956 * 64.73225 * 24 14 12 27 27 H 1.09005 * 109.47021 * 265.17074 * 1 2 3 28 28 H 1.08998 * 109.47835 * 25.17504 * 1 2 3 29 29 H 1.09000 * 109.46949 * 145.18166 * 1 2 3 30 30 H 1.08001 * 119.92394 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.86003 * 179.76146 * 4 3 2 32 32 H 0.97003 * 119.99414 * 0.02562 * 7 6 5 33 33 H 0.97000 * 119.99829 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.07751 * 180.02562 * 10 5 4 35 35 H 1.08997 * 109.47332 * 209.99596 * 15 14 12 36 36 H 1.09001 * 109.47130 * 329.99150 * 15 14 12 37 37 H 0.96996 * 119.99643 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47118 * 184.73435 * 24 14 12 39 39 H 1.09003 * 109.47122 * 65.23197 * 25 24 14 40 40 H 1.08995 * 109.47308 * 185.22363 * 25 24 14 41 41 H 1.09000 * 109.47495 * 305.23071 * 25 24 14 42 42 H 1.08997 * 109.46879 * 64.91763 * 26 24 14 43 43 H 1.09004 * 109.46938 * 184.91214 * 26 24 14 44 44 H 1.08996 * 109.47355 * 304.91559 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0049 5 6 4.2813 0.0019 -0.0053 6 16 6.0432 0.0154 -0.0123 7 7 6.5272 0.0154 -1.5961 8 8 6.4370 1.2694 0.5277 9 8 6.4562 -1.2301 0.5334 10 6 3.6023 -1.1988 0.0000 11 6 2.2064 -1.2077 0.0054 12 6 1.4721 -2.4908 0.0106 13 8 0.6586 -2.7220 0.8837 14 7 1.7045 -3.4042 -0.9528 15 6 2.5938 -3.0795 -2.0708 16 6 4.0072 -3.4639 -1.7166 17 1 4.2215 -3.9063 -0.7549 18 6 5.0266 -3.2509 -2.6201 19 7 4.7654 -2.7126 -3.7913 20 14 6.7785 -3.7281 -2.1812 21 1 6.8056 -4.3102 -0.8154 22 1 7.2778 -4.7300 -3.1569 23 1 7.6449 -2.5226 -2.2223 24 6 1.0680 -4.7218 -0.8819 25 6 1.4016 -5.3779 0.4595 26 6 -0.4484 -4.5631 -1.0089 27 1 -0.3633 -0.0865 1.0241 28 1 -0.3635 0.9300 -0.4371 29 1 -0.3633 -0.8437 -0.5868 30 1 1.6584 2.1294 -0.0004 31 1 4.1182 2.1331 -0.0088 32 1 5.8655 0.0090 -2.3053 33 1 7.4723 0.0225 -1.8144 34 1 4.1494 -2.1300 0.0001 35 1 2.2788 -3.6300 -2.9573 36 1 2.5480 -2.0093 -2.2724 37 1 5.4826 -2.5624 -4.4268 38 1 1.4372 -5.3478 -1.6943 39 1 0.9526 -4.8008 1.2678 40 1 1.0066 -6.3936 0.4754 41 1 2.4833 -5.4066 0.5909 42 1 -0.6916 -4.1769 -1.9987 43 1 -0.9281 -5.5319 -0.8691 44 1 -0.8059 -3.8677 -0.2496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608879671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -88.937080 kcal Electronic energy + Delta-G solvation = -29689.575988 eV Core-core repulsion = 25733.843810 eV Total energy + Delta-G solvation = -3955.732178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13429 -38.26738 -36.76788 -35.52681 -35.45687 -33.42779 -32.84142 -32.67955 -31.93173 -30.28822 -27.38658 -26.99862 -26.69761 -23.81495 -22.96463 -21.95965 -21.31827 -19.48311 -18.68015 -17.39231 -17.01537 -16.83897 -16.15947 -15.94983 -15.60291 -15.40587 -14.85677 -14.79842 -14.41525 -13.98364 -13.81188 -13.52501 -13.37825 -13.01310 -12.73026 -12.35294 -12.20444 -12.13766 -11.90028 -11.84056 -11.78045 -11.76556 -11.68205 -11.52445 -11.46412 -11.27883 -10.95868 -10.88713 -10.74024 -10.50690 -10.42026 -10.13256 -9.97100 -9.75144 -9.01422 -8.89210 -8.68055 -8.56096 -7.83186 -6.30226 -4.37944 0.74186 1.03470 1.50250 3.13498 3.22119 3.30571 3.44479 3.48402 3.68704 3.85793 4.08776 4.30354 4.77525 4.94386 4.99855 5.04016 5.13743 5.34852 5.50322 5.52631 5.62343 5.76604 5.77326 5.79868 5.93292 6.03291 6.11046 6.15232 6.18237 6.28537 6.35686 6.38170 6.39947 6.41911 6.64941 6.69279 6.71747 6.77562 7.05073 7.10072 7.42177 7.48364 7.63485 7.90843 8.20841 8.66295 8.86618 9.29518 10.74059 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.006771 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.699689 B = 4134.437921 C = 5917.569620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.011 3.989 3 C -0.161 4.161 4 C -0.005 4.005 5 C -0.690 4.690 6 S 2.699 3.301 7 N -1.245 6.245 8 O -0.979 6.979 9 O -0.959 6.959 10 C 0.053 3.947 11 C -0.141 4.141 12 C 0.564 3.436 13 O -0.557 6.557 14 N -0.585 5.585 15 C 0.233 3.767 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.074 3.926 19 N -0.882 5.882 20 Si 0.878 3.122 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.269 1.269 24 C 0.148 3.852 25 C -0.167 4.167 26 C -0.166 4.166 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.423 0.577 33 H 0.416 0.584 34 H 0.174 0.826 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 5.466 1.780 7.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.010 3.990 3 C -0.180 4.180 4 C -0.025 4.025 5 C -0.778 4.778 6 S 2.789 3.211 7 N -0.920 5.920 8 O -0.969 6.969 9 O -0.949 6.949 10 C 0.033 3.967 11 C -0.145 4.145 12 C 0.352 3.648 13 O -0.438 6.438 14 N -0.315 5.315 15 C 0.113 3.887 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.130 4.130 19 N -0.520 5.520 20 Si 0.705 3.295 21 H -0.188 1.188 22 H -0.215 1.215 23 H -0.194 1.194 24 C 0.044 3.956 25 C -0.225 4.225 26 C -0.224 4.224 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.245 0.755 34 H 0.191 0.809 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.996 5.376 2.957 7.322 hybrid contribution 0.621 -0.317 -0.900 1.138 sum -3.375 5.058 2.057 6.420 Atomic orbital electron populations 1.20905 0.90481 1.02686 1.03419 1.20201 0.96334 0.92014 0.90468 1.20926 0.93957 0.97398 1.05674 1.20948 0.94661 0.96303 0.90580 1.30299 1.25284 0.99585 1.22672 1.01426 0.73311 0.73910 0.72486 1.52932 1.17236 1.95183 1.26669 1.93554 1.81497 1.44601 1.77228 1.93606 1.80437 1.44035 1.76773 1.21821 0.93580 0.98231 0.83054 1.19890 0.94039 0.93589 1.06967 1.18078 0.81624 0.83512 0.81632 1.90635 1.35724 1.79374 1.38110 1.48321 1.45866 1.12613 1.24675 1.19534 0.88077 0.97350 0.83713 1.21582 0.91819 1.42386 1.02339 0.91454 1.24863 0.99107 0.94463 0.94576 1.69959 1.33117 1.42384 1.06516 0.86721 0.84494 0.79190 0.79108 1.18773 1.21493 1.19446 1.20877 0.92188 0.84004 0.98491 1.22176 1.02137 0.99730 0.98421 1.22198 0.95989 1.02067 1.02108 0.89839 0.91390 0.91017 0.85050 0.84431 0.74806 0.75473 0.80914 0.94298 0.94459 0.92449 0.89559 0.90730 0.92783 0.92357 0.93205 0.92550 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.05 36.00 0.33 -1.30 16 2 C 0.01 0.18 5.91 -104.23 -0.62 -0.44 16 3 C -0.16 -2.29 9.67 -39.64 -0.38 -2.67 16 4 C -0.01 -0.08 9.52 -39.49 -0.38 -0.46 16 5 C -0.69 -12.14 5.94 -39.64 -0.24 -12.37 16 6 S 2.70 47.20 6.28 -107.50 -0.67 46.52 16 7 N -1.24 -18.78 9.55 60.35 0.58 -18.20 16 8 O -0.98 -17.86 17.27 -57.17 -0.99 -18.85 16 9 O -0.96 -19.97 17.28 -57.17 -0.99 -20.96 16 10 C 0.05 1.04 7.35 -39.18 -0.29 0.75 16 11 C -0.14 -2.71 4.43 -104.97 -0.47 -3.18 16 12 C 0.56 11.32 5.45 -12.33 -0.07 11.25 16 13 O -0.56 -11.53 12.56 5.32 0.07 -11.47 16 14 N -0.58 -11.65 2.41 -168.58 -0.41 -12.06 16 15 C 0.23 5.14 4.68 -5.20 -0.02 5.12 16 16 C -0.54 -12.90 6.46 -34.44 -0.22 -13.12 16 17 H 0.07 1.67 7.19 -52.48 -0.38 1.30 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.88 -21.52 13.29 55.43 0.74 -20.79 16 20 Si 0.88 19.89 29.54 -169.99 -5.02 14.87 16 21 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C 0.15 2.60 3.27 -67.93 -0.22 2.38 16 25 C -0.17 -2.83 8.95 37.16 0.33 -2.49 16 26 C -0.17 -2.55 9.24 37.16 0.34 -2.21 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.07 1.08 7.19 -51.93 -0.37 0.70 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.14 1.74 7.60 -52.49 -0.40 1.34 16 32 H 0.42 6.17 8.92 -34.47 -0.31 5.86 16 33 H 0.42 5.38 8.96 -34.48 -0.31 5.07 16 34 H 0.17 3.79 4.72 -52.49 -0.25 3.54 16 35 H 0.04 0.90 7.96 -51.93 -0.41 0.49 16 36 H 0.04 0.86 6.77 -51.93 -0.35 0.51 16 37 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 38 H 0.09 1.50 7.84 -51.93 -0.41 1.10 16 39 H 0.07 1.36 6.20 -51.93 -0.32 1.04 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.24 6.23 -51.93 -0.32 0.92 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -29.37 369.57 -9.04 -38.41 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -5.92 Total: 14.01 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.00 Total: -17.06 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.91 Total: -51.04 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.91 Total: -51.28 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 47.20 SS G_CDS: -0.67 Total: 46.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.37 -9.04 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608879671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.524 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds