Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37982 * 120.07514 * 2 1 4 4 C 1.38336 * 120.15052 * 180.23556 * 3 2 1 5 5 C 1.38387 * 120.29077 * 359.78253 * 4 3 2 6 6 S 1.76193 * 119.92672 * 179.97438 * 5 4 3 7 7 N 1.65607 * 107.21836 * 269.97539 * 6 5 4 8 8 O 1.42095 * 106.40359 * 23.51970 * 6 5 4 9 9 O 1.42108 * 106.39989 * 156.44086 * 6 5 4 10 10 C 1.37937 * 120.14389 * 359.96030 * 5 4 3 11 11 C 1.39560 * 120.07890 * 179.74226 * 2 1 3 12 12 C 1.47842 * 120.14137 * 0.02562 * 11 2 1 13 13 O 1.21554 * 120.00033 * 304.02750 * 12 11 2 14 14 N 1.34776 * 120.00322 * 124.01947 * 12 11 2 15 15 C 1.46497 * 119.99882 * 354.52120 * 14 12 11 16 16 C 1.50698 * 109.47586 * 89.99273 * 15 14 12 17 17 H 1.08004 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00332 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00006 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47142 * 120.00012 * 20 18 16 23 23 H 1.48508 * 109.46777 * 239.99700 * 20 18 16 24 24 C 1.46500 * 120.00141 * 174.51293 * 14 12 11 25 25 C 1.53001 * 109.47136 * 304.73062 * 24 14 12 26 26 C 1.53000 * 109.46956 * 64.73225 * 24 14 12 27 27 H 1.09005 * 109.47021 * 265.17074 * 1 2 3 28 28 H 1.08998 * 109.47835 * 25.17504 * 1 2 3 29 29 H 1.09000 * 109.46949 * 145.18166 * 1 2 3 30 30 H 1.08001 * 119.92394 * 359.97438 * 3 2 1 31 31 H 1.07993 * 119.86003 * 179.76146 * 4 3 2 32 32 H 0.97003 * 119.99414 * 0.02562 * 7 6 5 33 33 H 0.97000 * 119.99829 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.07751 * 180.02562 * 10 5 4 35 35 H 1.08997 * 109.47332 * 209.99596 * 15 14 12 36 36 H 1.09001 * 109.47130 * 329.99150 * 15 14 12 37 37 H 0.96996 * 119.99643 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47118 * 184.73435 * 24 14 12 39 39 H 1.09003 * 109.47122 * 65.23197 * 25 24 14 40 40 H 1.08995 * 109.47308 * 185.22363 * 25 24 14 41 41 H 1.09000 * 109.47495 * 305.23071 * 25 24 14 42 42 H 1.08997 * 109.46879 * 64.91763 * 26 24 14 43 43 H 1.09004 * 109.46938 * 184.91214 * 26 24 14 44 44 H 1.08996 * 109.47355 * 304.91559 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 -0.0049 5 6 4.2813 0.0019 -0.0053 6 16 6.0432 0.0154 -0.0123 7 7 6.5272 0.0154 -1.5961 8 8 6.4370 1.2694 0.5277 9 8 6.4562 -1.2301 0.5334 10 6 3.6023 -1.1988 0.0000 11 6 2.2064 -1.2077 0.0054 12 6 1.4721 -2.4908 0.0106 13 8 0.6586 -2.7220 0.8837 14 7 1.7045 -3.4042 -0.9528 15 6 2.5938 -3.0795 -2.0708 16 6 4.0072 -3.4639 -1.7166 17 1 4.2215 -3.9063 -0.7549 18 6 5.0266 -3.2509 -2.6201 19 7 4.7654 -2.7126 -3.7913 20 14 6.7785 -3.7281 -2.1812 21 1 6.8056 -4.3102 -0.8154 22 1 7.2778 -4.7300 -3.1569 23 1 7.6449 -2.5226 -2.2223 24 6 1.0680 -4.7218 -0.8819 25 6 1.4016 -5.3779 0.4595 26 6 -0.4484 -4.5631 -1.0089 27 1 -0.3633 -0.0865 1.0241 28 1 -0.3635 0.9300 -0.4371 29 1 -0.3633 -0.8437 -0.5868 30 1 1.6584 2.1294 -0.0004 31 1 4.1182 2.1331 -0.0088 32 1 5.8655 0.0090 -2.3053 33 1 7.4723 0.0225 -1.8144 34 1 4.1494 -2.1300 0.0001 35 1 2.2788 -3.6300 -2.9573 36 1 2.5480 -2.0093 -2.2724 37 1 5.4826 -2.5624 -4.4268 38 1 1.4372 -5.3478 -1.6943 39 1 0.9526 -4.8008 1.2678 40 1 1.0066 -6.3936 0.4754 41 1 2.4833 -5.4066 0.5909 42 1 -0.6916 -4.1769 -1.9987 43 1 -0.9281 -5.5319 -0.8691 44 1 -0.8059 -3.8677 -0.2496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608879671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -109.228234 kcal Electronic energy + Delta-G solvation = -29690.455878 eV Core-core repulsion = 25733.843810 eV Total energy + Delta-G solvation = -3956.612068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58494 -39.63980 -38.23917 -37.09770 -36.94851 -35.11988 -34.12090 -33.94521 -33.51739 -31.66436 -29.02517 -28.34690 -28.02530 -25.29117 -24.63923 -23.32635 -22.65803 -20.86562 -20.07982 -18.84723 -18.67269 -18.39411 -17.65935 -17.34262 -16.95480 -16.90443 -16.38167 -16.24932 -16.01783 -15.36416 -15.22985 -14.82143 -14.67054 -14.44131 -14.24996 -14.00177 -13.62699 -13.37884 -13.31827 -13.27037 -13.20259 -13.15183 -13.14017 -13.10859 -12.83299 -12.69945 -12.64450 -12.51561 -12.18445 -12.13601 -11.80547 -11.77421 -11.56051 -11.29112 -10.57885 -10.48764 -10.14423 -9.93811 -9.45792 -8.18328 -6.28402 -0.61726 -0.28936 0.16377 1.37912 1.44595 1.58778 1.69059 2.10011 2.24155 2.40045 2.47761 2.74222 3.10955 3.40996 3.65968 3.80080 3.87572 4.04228 4.17525 4.25495 4.36769 4.39901 4.54984 4.68607 4.69798 4.73310 4.78987 4.87731 4.97011 4.99166 5.00857 5.04598 5.05207 5.16942 5.19493 5.22956 5.30489 5.40610 5.42691 5.71442 5.79908 5.92499 6.05979 6.27582 6.54900 6.82899 7.27418 7.41892 8.86604 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.006771 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.699689 B = 4134.437921 C = 5917.569620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.007 3.993 3 C -0.146 4.146 4 C -0.002 4.002 5 C -0.696 4.696 6 S 2.712 3.288 7 N -1.236 6.236 8 O -0.986 6.986 9 O -0.999 6.999 10 C 0.030 3.970 11 C -0.169 4.169 12 C 0.562 3.438 13 O -0.568 6.568 14 N -0.589 5.589 15 C 0.252 3.748 16 C -0.542 4.542 17 H 0.047 0.953 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.243 1.243 24 C 0.136 3.864 25 C -0.158 4.158 26 C -0.153 4.153 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.180 0.820 31 H 0.169 0.831 32 H 0.428 0.572 33 H 0.426 0.574 34 H 0.143 0.857 35 H 0.026 0.974 36 H 0.028 0.972 37 H 0.271 0.729 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 7.445 1.296 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.006 3.994 3 C -0.164 4.164 4 C -0.021 4.021 5 C -0.785 4.785 6 S 2.803 3.197 7 N -0.915 5.915 8 O -0.975 6.975 9 O -0.988 6.988 10 C 0.010 3.990 11 C -0.173 4.173 12 C 0.350 3.650 13 O -0.451 6.451 14 N -0.319 5.319 15 C 0.132 3.868 16 C -0.580 4.580 17 H 0.065 0.935 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.215 1.215 22 H -0.214 1.214 23 H -0.167 1.167 24 C 0.033 3.967 25 C -0.216 4.216 26 C -0.211 4.211 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.197 0.803 31 H 0.186 0.814 32 H 0.257 0.743 33 H 0.258 0.742 34 H 0.160 0.840 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.060 7.356 2.461 9.262 hybrid contribution 0.927 -0.909 -0.703 1.476 sum -4.134 6.448 1.759 7.858 Atomic orbital electron populations 1.20943 0.88632 1.03910 1.03581 1.20609 0.97782 0.91617 0.89421 1.21444 0.93662 0.98385 1.02935 1.21408 0.95442 0.96342 0.88920 1.30202 1.24947 0.99929 1.23454 1.00804 0.73170 0.72994 0.72691 1.52717 1.18091 1.94900 1.25822 1.93539 1.81760 1.44423 1.77788 1.93564 1.81378 1.45854 1.78017 1.21512 0.94005 0.97992 0.85493 1.20006 0.93954 0.94378 1.08984 1.18304 0.81460 0.83951 0.81275 1.90610 1.36369 1.79763 1.38314 1.48335 1.45717 1.13592 1.24260 1.19146 0.87531 0.96336 0.83835 1.21538 0.92938 1.42083 1.01427 0.93521 1.25067 1.00182 0.94579 0.94624 1.69963 1.33746 1.42909 1.06736 0.86453 0.83846 0.79963 0.77315 1.21549 1.21364 1.16658 1.21135 0.93708 0.83113 0.98708 1.22092 1.00618 1.01263 0.97586 1.22078 0.94059 1.03219 1.01724 0.89556 0.87644 0.92800 0.80317 0.81381 0.74278 0.74214 0.83970 0.95612 0.95415 0.91885 0.89586 0.92127 0.89670 0.94559 0.92873 0.89830 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 9.05 71.23 0.64 -2.21 16 2 C 0.01 0.21 5.91 -19.61 -0.12 0.09 16 3 C -0.15 -3.60 9.67 22.23 0.21 -3.39 16 4 C 0.00 -0.05 9.52 22.33 0.21 0.16 16 5 C -0.70 -24.02 5.94 22.23 0.13 -23.89 16 6 S 2.71 93.75 6.28 -56.49 -0.35 93.40 16 7 N -1.24 -36.05 9.55 37.02 0.35 -35.70 16 8 O -0.99 -34.55 17.27 -128.00 -2.21 -36.76 16 9 O -1.00 -42.61 17.28 -128.00 -2.21 -44.82 16 10 C 0.03 1.21 7.35 22.53 0.17 1.37 16 11 C -0.17 -6.54 4.43 -20.09 -0.09 -6.63 16 12 C 0.56 23.01 5.45 86.79 0.47 23.48 16 13 O -0.57 -23.87 12.56 -3.88 -0.05 -23.92 16 14 N -0.59 -24.08 2.41 -805.55 -1.94 -26.02 16 15 C 0.25 11.43 4.68 85.63 0.40 11.83 16 16 C -0.54 -26.60 6.46 25.60 0.17 -26.43 16 17 H 0.05 2.46 7.19 -2.91 -0.02 2.44 16 18 C 0.06 2.86 5.46 84.65 0.46 3.32 16 19 N -0.90 -43.54 13.29 21.45 0.28 -43.26 16 20 Si 0.90 40.71 29.54 68.60 2.03 42.73 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.24 -9.85 7.11 99.48 0.71 -9.14 16 24 C 0.14 4.82 3.27 44.99 0.15 4.97 16 25 C -0.16 -5.41 8.95 71.98 0.64 -4.76 16 26 C -0.15 -4.57 9.24 71.98 0.67 -3.91 16 27 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.10 1.82 8.05 -2.39 -0.02 1.80 16 29 H 0.05 1.55 7.19 -2.39 -0.02 1.53 16 30 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.17 3.55 7.60 -2.91 -0.02 3.53 16 32 H 0.43 12.00 8.92 -96.74 -0.86 11.14 16 33 H 0.43 10.45 8.96 -96.74 -0.87 9.59 16 34 H 0.14 6.61 4.72 -2.91 -0.01 6.60 16 35 H 0.03 1.22 7.96 -2.39 -0.02 1.21 16 36 H 0.03 1.31 6.77 -2.39 -0.02 1.29 16 37 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 38 H 0.09 3.02 7.84 -2.39 -0.02 3.00 16 39 H 0.06 2.24 6.20 -2.39 -0.01 2.23 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.06 1.95 6.23 -2.39 -0.01 1.93 16 Total: -1.00 -64.75 369.57 -0.65 -65.40 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.68 Total: 34.94 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.12 Total: -25.99 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -1.30 Total: -104.98 kcal Atomic # 8 Polarization: -101.03 SS G_CDS: -4.47 Total: -105.50 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 93.75 SS G_CDS: -0.35 Total: 93.40 kcal Total: -64.75 -0.65 -65.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608879671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.825 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds