Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99556 * 2 1 4 4 H 1.48505 * 109.47158 * 270.09213 * 3 2 1 5 5 H 1.48500 * 109.47443 * 30.08735 * 3 2 1 6 6 H 1.48496 * 109.47134 * 150.08915 * 3 2 1 7 7 C 1.40025 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99737 * 356.63959 * 7 2 1 9 9 C 1.41547 * 120.00261 * 176.64813 * 7 2 1 10 10 C 1.41167 * 120.99996 * 140.78486 * 9 7 2 11 11 C 1.37589 * 119.01886 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.10619 * 0.02562 * 11 10 9 13 13 C 1.32475 * 122.23194 * 359.65854 * 12 11 10 14 14 N 1.39468 * 119.58394 * 180.33931 * 13 12 11 15 15 C 1.34783 * 119.99621 * 5.75005 * 14 13 12 16 16 O 1.21276 * 120.00373 * 4.64421 * 15 14 13 17 17 C 1.50700 * 119.99582 * 184.64871 * 15 14 13 18 18 N 1.46507 * 109.46619 * 179.97438 * 17 15 14 19 19 C 1.34783 * 119.99588 * 179.97438 * 18 17 15 20 20 O 1.21590 * 120.00074 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99880 * 179.97438 * 19 18 17 22 22 C 1.39942 * 120.00000 * 174.96570 * 21 19 18 23 23 C 1.38871 * 120.06685 * 215.02669 * 22 21 19 24 24 C 1.38121 * 119.92613 * 179.76908 * 23 22 21 25 25 C 1.38282 * 120.06907 * 0.51023 * 24 23 22 26 26 C 1.38284 * 120.13804 * 359.74137 * 25 24 23 27 27 C 1.38112 * 120.07090 * 0.02562 * 26 25 24 28 28 C 1.38597 * 120.83634 * 0.63492 * 13 12 11 29 29 H 0.96999 * 120.00027 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.49143 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.44993 * 180.02562 * 11 10 9 32 32 H 0.96994 * 120.00638 * 185.74619 * 14 13 12 33 33 H 1.09003 * 109.47470 * 299.99017 * 17 15 14 34 34 H 1.08997 * 109.47598 * 60.00107 * 17 15 14 35 35 H 0.96996 * 120.00348 * 0.02562 * 18 17 15 36 36 H 0.96999 * 119.99986 * 354.97266 * 21 19 18 37 37 H 1.07996 * 120.03850 * 359.97438 * 23 22 21 38 38 H 1.07995 * 119.96517 * 180.25503 * 24 23 22 39 39 H 1.08001 * 119.92888 * 179.72883 * 25 24 23 40 40 H 1.08007 * 119.96006 * 180.02562 * 26 25 24 41 41 H 1.08007 * 120.03072 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.60021 * 179.67816 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4869 2.0477 -1.4001 5 1 1.4397 2.6522 0.7019 6 1 3.5398 1.4398 0.6981 7 6 2.0077 -1.2126 0.0005 8 1 1.4691 -2.1471 0.0558 9 6 3.4213 -1.2136 -0.0711 10 6 4.1869 -2.1285 0.6836 11 6 5.5587 -2.0932 0.5833 12 7 6.1631 -1.2211 -0.2033 13 6 5.4908 -0.3461 -0.9363 14 7 6.1854 0.5456 -1.7533 15 6 7.5226 0.4387 -1.8833 16 8 8.1113 -0.4823 -1.3581 17 6 8.2863 1.4640 -2.6813 18 7 9.7122 1.1276 -2.6709 19 6 10.5938 1.9097 -3.3250 20 8 10.2058 2.8945 -3.9233 21 7 11.9056 1.6006 -3.3150 22 6 12.8069 2.3502 -4.0793 23 6 13.8985 1.7307 -4.6735 24 6 14.7836 2.4724 -5.4312 25 6 14.5895 3.8324 -5.5896 26 6 13.5063 4.4530 -4.9949 27 6 12.6150 3.7160 -4.2400 28 6 4.1061 -0.3015 -0.8968 29 1 -0.4850 0.8400 -0.0004 30 1 3.7030 -2.8456 1.3302 31 1 6.1512 -2.7903 1.1573 32 1 5.7061 1.2425 -2.2281 33 1 7.9217 1.4703 -3.7085 34 1 8.1427 2.4496 -2.2386 35 1 10.0217 0.3418 -2.1939 36 1 12.2249 0.8585 -2.7782 37 1 14.0534 0.6695 -4.5461 38 1 15.6305 1.9906 -5.8969 39 1 15.2855 4.4110 -6.1789 40 1 13.3572 5.5153 -5.1208 41 1 11.7694 4.2015 -3.7754 42 1 3.5620 0.4169 -1.4921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610792906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = 13.100475 kcal Electronic energy + Delta-G solvation = -27174.138596 eV Core-core repulsion = 23119.679898 eV Total energy + Delta-G solvation = -4054.458698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98645 -40.05505 -38.90961 -38.17360 -35.10979 -34.86612 -34.41155 -33.84965 -31.41353 -31.15396 -30.26234 -29.30445 -27.29292 -26.05438 -23.32924 -22.80304 -22.49624 -21.78477 -21.02691 -20.04773 -19.01451 -18.19416 -17.87203 -16.94071 -16.57259 -16.24290 -16.04813 -15.65994 -15.29448 -15.23443 -14.86301 -14.62291 -14.38375 -14.22386 -14.09012 -13.65646 -13.42864 -13.32569 -13.10053 -13.04748 -12.96604 -12.43012 -11.99717 -11.64130 -11.54439 -11.11438 -11.00464 -10.71217 -10.69118 -10.32311 -10.21422 -10.06254 -9.83333 -9.46553 -9.41203 -9.18064 -8.38428 -8.27443 -8.11078 -7.42905 -7.01724 -4.79071 1.03426 1.15974 2.05891 2.16051 2.50272 2.79697 2.88868 2.99972 3.13700 3.17330 3.20813 3.58341 3.84948 3.88071 4.50952 4.55198 4.63336 4.69772 4.90488 5.11967 5.14809 5.16219 5.23906 5.27862 5.33602 5.55995 5.74117 5.98240 6.00577 6.08024 6.15065 6.17330 6.24454 6.28715 6.32769 6.41200 6.58783 6.79569 6.88272 6.95213 7.09752 7.40743 7.57658 7.60803 7.84615 8.14580 8.18435 8.28913 8.39702 8.61141 9.23672 10.00465 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.001931 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.395393 B =14493.720010 C =15388.623144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.447 4.447 8 H 0.096 0.904 9 C 0.130 3.870 10 C -0.261 4.261 11 C 0.125 3.875 12 N -0.550 5.550 13 C 0.361 3.639 14 N -0.657 5.657 15 C 0.498 3.502 16 O -0.476 6.476 17 C 0.118 3.882 18 N -0.726 5.726 19 C 0.709 3.291 20 O -0.575 6.575 21 N -0.686 5.686 22 C 0.166 3.834 23 C -0.149 4.149 24 C -0.103 4.103 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.120 4.120 28 C -0.302 4.302 29 H 0.287 0.713 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.411 0.589 36 H 0.409 0.591 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.557 6.943 -7.996 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.168 1.168 7 C -0.478 4.478 8 H 0.114 0.886 9 C 0.122 3.878 10 C -0.284 4.284 11 C -0.027 4.027 12 N -0.269 5.269 13 C 0.134 3.866 14 N -0.303 5.303 15 C 0.282 3.718 16 O -0.346 6.346 17 C -0.010 4.010 18 N -0.384 5.384 19 C 0.409 3.591 20 O -0.452 6.452 21 N -0.334 5.334 22 C 0.071 3.929 23 C -0.169 4.169 24 C -0.121 4.121 25 C -0.159 4.159 26 C -0.121 4.121 27 C -0.141 4.141 28 C -0.327 4.327 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.248 0.752 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.248 0.752 36 H 0.245 0.755 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 23.249 7.228 -8.163 25.678 hybrid contribution -0.881 0.339 0.233 0.972 sum 22.368 7.567 -7.930 24.909 Atomic orbital electron populations 1.69562 1.07826 1.30281 1.36143 1.26075 0.94905 1.01366 0.91057 0.86333 0.80885 0.79792 0.79325 1.19473 1.21666 1.16820 1.19440 0.89205 0.95422 1.43743 0.88573 1.17765 0.93937 0.88974 0.87152 1.22078 0.94202 1.06549 1.05563 1.21940 0.92052 0.94493 0.94218 1.67253 1.39242 1.08415 1.11956 1.17979 0.87536 0.90196 0.90851 1.43358 1.07185 1.33041 1.46747 1.20485 0.82758 0.86747 0.81828 1.90780 1.67373 1.31823 1.44640 1.20954 0.80038 0.98189 1.01814 1.44715 1.06091 1.30919 1.56689 1.15736 0.80490 0.83039 0.79849 1.90937 1.78197 1.27861 1.48235 1.42530 1.05372 1.36068 1.49409 1.17528 0.90418 0.90570 0.94388 1.20903 0.96377 0.99926 0.99733 1.20917 0.98871 0.94124 0.98207 1.21143 0.98499 0.94972 1.01263 1.21092 0.94128 0.99988 0.96923 1.21379 1.00224 0.92140 1.00325 1.21363 0.91734 1.10102 1.09537 0.90265 0.86858 0.85006 0.75242 0.88212 0.88186 0.75151 0.75516 0.85743 0.85762 0.86100 0.85783 0.84081 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.82 13.92 55.55 0.77 -20.05 16 2 C 0.08 2.11 5.51 -17.34 -0.10 2.02 16 3 Si 0.91 19.50 24.52 -169.99 -4.17 15.33 16 4 H -0.27 -5.37 6.80 56.52 0.38 -4.98 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.44 6.49 56.52 0.37 -5.07 16 7 C -0.45 -11.48 9.67 -37.65 -0.36 -11.84 16 8 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.13 3.14 5.04 -106.55 -0.54 2.60 16 10 C -0.26 -5.78 9.90 -38.71 -0.38 -6.16 16 11 C 0.13 2.65 11.15 -17.68 -0.20 2.46 16 12 N -0.55 -12.31 7.89 -12.52 -0.10 -12.41 16 13 C 0.36 7.68 7.40 -154.70 -1.15 6.53 16 14 N -0.66 -10.84 5.39 -11.49 -0.06 -10.91 16 15 C 0.50 7.66 7.85 -10.98 -0.09 7.58 16 16 O -0.48 -8.91 13.96 5.56 0.08 -8.83 16 17 C 0.12 1.36 6.16 -5.19 -0.03 1.33 16 18 N -0.73 -8.11 5.53 -66.41 -0.37 -8.47 16 19 C 0.71 8.47 8.41 -86.92 -0.73 7.74 16 20 O -0.58 -8.55 13.78 5.29 0.07 -8.47 16 21 N -0.69 -6.45 5.34 -14.22 -0.08 -6.52 16 22 C 0.17 1.68 6.30 -83.69 -0.53 1.15 16 23 C -0.15 -1.22 9.97 -39.39 -0.39 -1.61 16 24 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 25 C -0.14 -1.08 10.04 -39.55 -0.40 -1.48 16 26 C -0.10 -0.92 10.04 -39.61 -0.40 -1.31 16 27 C -0.12 -1.31 8.70 -39.40 -0.34 -1.65 16 28 C -0.30 -6.77 6.79 -38.48 -0.26 -7.03 16 29 H 0.29 6.66 8.29 -40.82 -0.34 6.33 16 30 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 31 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.41 5.33 8.70 -40.82 -0.36 4.98 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.41 4.36 7.46 -40.82 -0.30 4.05 16 36 H 0.41 2.66 8.84 -40.82 -0.36 2.29 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.14 1.74 6.23 -52.48 -0.33 1.41 16 42 H 0.11 2.35 4.95 -52.49 -0.26 2.09 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -32.54 360.83 -9.30 -41.83 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -4.60 Total: 13.92 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -6.29 Total: -0.85 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.17 Total: -58.37 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.15 Total: -17.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.17 Total: 15.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.54 -9.30 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610792906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.933 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds