Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99556 * 2 1 4 4 H 1.48505 * 109.47158 * 270.09213 * 3 2 1 5 5 H 1.48500 * 109.47443 * 30.08735 * 3 2 1 6 6 H 1.48496 * 109.47134 * 150.08915 * 3 2 1 7 7 C 1.40025 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99737 * 356.63959 * 7 2 1 9 9 C 1.41547 * 120.00261 * 176.64813 * 7 2 1 10 10 C 1.41167 * 120.99996 * 140.78486 * 9 7 2 11 11 C 1.37589 * 119.01886 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.10619 * 0.02562 * 11 10 9 13 13 C 1.32475 * 122.23194 * 359.65854 * 12 11 10 14 14 N 1.39468 * 119.58394 * 180.33931 * 13 12 11 15 15 C 1.34783 * 119.99621 * 5.75005 * 14 13 12 16 16 O 1.21276 * 120.00373 * 4.64421 * 15 14 13 17 17 C 1.50700 * 119.99582 * 184.64871 * 15 14 13 18 18 N 1.46507 * 109.46619 * 179.97438 * 17 15 14 19 19 C 1.34783 * 119.99588 * 179.97438 * 18 17 15 20 20 O 1.21590 * 120.00074 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99880 * 179.97438 * 19 18 17 22 22 C 1.39942 * 120.00000 * 174.96570 * 21 19 18 23 23 C 1.38871 * 120.06685 * 215.02669 * 22 21 19 24 24 C 1.38121 * 119.92613 * 179.76908 * 23 22 21 25 25 C 1.38282 * 120.06907 * 0.51023 * 24 23 22 26 26 C 1.38284 * 120.13804 * 359.74137 * 25 24 23 27 27 C 1.38112 * 120.07090 * 0.02562 * 26 25 24 28 28 C 1.38597 * 120.83634 * 0.63492 * 13 12 11 29 29 H 0.96999 * 120.00027 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.49143 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.44993 * 180.02562 * 11 10 9 32 32 H 0.96994 * 120.00638 * 185.74619 * 14 13 12 33 33 H 1.09003 * 109.47470 * 299.99017 * 17 15 14 34 34 H 1.08997 * 109.47598 * 60.00107 * 17 15 14 35 35 H 0.96996 * 120.00348 * 0.02562 * 18 17 15 36 36 H 0.96999 * 119.99986 * 354.97266 * 21 19 18 37 37 H 1.07996 * 120.03850 * 359.97438 * 23 22 21 38 38 H 1.07995 * 119.96517 * 180.25503 * 24 23 22 39 39 H 1.08001 * 119.92888 * 179.72883 * 25 24 23 40 40 H 1.08007 * 119.96006 * 180.02562 * 26 25 24 41 41 H 1.08007 * 120.03072 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.60021 * 179.67816 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4869 2.0477 -1.4001 5 1 1.4397 2.6522 0.7019 6 1 3.5398 1.4398 0.6981 7 6 2.0077 -1.2126 0.0005 8 1 1.4691 -2.1471 0.0558 9 6 3.4213 -1.2136 -0.0711 10 6 4.1869 -2.1285 0.6836 11 6 5.5587 -2.0932 0.5833 12 7 6.1631 -1.2211 -0.2033 13 6 5.4908 -0.3461 -0.9363 14 7 6.1854 0.5456 -1.7533 15 6 7.5226 0.4387 -1.8833 16 8 8.1113 -0.4823 -1.3581 17 6 8.2863 1.4640 -2.6813 18 7 9.7122 1.1276 -2.6709 19 6 10.5938 1.9097 -3.3250 20 8 10.2058 2.8945 -3.9233 21 7 11.9056 1.6006 -3.3150 22 6 12.8069 2.3502 -4.0793 23 6 13.8985 1.7307 -4.6735 24 6 14.7836 2.4724 -5.4312 25 6 14.5895 3.8324 -5.5896 26 6 13.5063 4.4530 -4.9949 27 6 12.6150 3.7160 -4.2400 28 6 4.1061 -0.3015 -0.8968 29 1 -0.4850 0.8400 -0.0004 30 1 3.7030 -2.8456 1.3302 31 1 6.1512 -2.7903 1.1573 32 1 5.7061 1.2425 -2.2281 33 1 7.9217 1.4703 -3.7085 34 1 8.1427 2.4496 -2.2386 35 1 10.0217 0.3418 -2.1939 36 1 12.2249 0.8585 -2.7782 37 1 14.0534 0.6695 -4.5461 38 1 15.6305 1.9906 -5.8969 39 1 15.2855 4.4110 -6.1789 40 1 13.3572 5.5153 -5.1208 41 1 11.7694 4.2015 -3.7754 42 1 3.5620 0.4169 -1.4921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610792906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -9.460302 kcal Electronic energy + Delta-G solvation = -27175.116905 eV Core-core repulsion = 23119.679898 eV Total energy + Delta-G solvation = -4055.437006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91200 -41.37757 -39.99254 -39.39596 -36.29835 -35.83810 -35.62526 -35.52843 -33.23304 -31.78115 -31.38947 -30.44638 -28.40729 -27.85285 -24.21875 -24.15941 -23.58743 -23.03198 -21.87945 -21.51772 -19.97223 -19.60223 -18.99007 -18.26203 -17.56713 -17.36112 -17.22674 -17.03913 -16.44627 -16.33702 -16.18132 -15.86380 -15.77172 -15.31477 -14.93286 -14.84695 -14.78638 -14.69963 -14.34475 -14.23759 -13.89091 -13.58355 -13.37518 -12.82872 -12.73416 -12.63652 -12.53510 -12.16311 -11.90116 -11.60849 -11.53527 -11.34041 -11.14948 -11.12116 -10.37387 -10.09881 -9.82206 -9.80772 -9.08018 -9.04575 -8.87699 -6.73050 0.37608 0.44561 0.51458 0.72874 1.24118 1.26437 1.35669 1.47157 1.63415 1.93862 2.01243 2.09919 2.68776 2.93501 3.08157 3.34651 3.43221 4.00924 4.04551 4.12566 4.28392 4.28601 4.35394 4.41680 4.56711 4.59006 4.60478 4.61864 4.67717 4.70773 5.09096 5.12251 5.16156 5.26220 5.34464 5.42852 5.44640 5.61005 5.67738 5.69968 5.84135 5.97848 6.14540 6.19643 6.34383 6.49315 6.70380 6.80206 7.01687 7.32236 7.56877 8.19487 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.001931 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.395393 B =14493.720010 C =15388.623144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.048 3.952 3 Si 0.962 3.038 4 H -0.241 1.241 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.479 4.479 8 H 0.063 0.937 9 C 0.115 3.885 10 C -0.272 4.272 11 C 0.129 3.871 12 N -0.561 5.561 13 C 0.361 3.639 14 N -0.650 5.650 15 C 0.503 3.497 16 O -0.508 6.508 17 C 0.130 3.870 18 N -0.723 5.723 19 C 0.708 3.292 20 O -0.607 6.607 21 N -0.675 5.675 22 C 0.144 3.856 23 C -0.149 4.149 24 C -0.103 4.103 25 C -0.140 4.140 26 C -0.113 4.113 27 C -0.145 4.145 28 C -0.307 4.307 29 H 0.295 0.705 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.429 0.571 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.414 0.586 36 H 0.422 0.578 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.716 8.026 -9.236 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.165 1.165 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.107 3.893 10 C -0.295 4.295 11 C -0.024 4.024 12 N -0.280 5.280 13 C 0.133 3.867 14 N -0.299 5.299 15 C 0.289 3.711 16 O -0.380 6.380 17 C 0.002 3.998 18 N -0.381 5.381 19 C 0.408 3.592 20 O -0.486 6.486 21 N -0.323 5.323 22 C 0.049 3.951 23 C -0.170 4.170 24 C -0.122 4.122 25 C -0.159 4.159 26 C -0.131 4.131 27 C -0.166 4.166 28 C -0.332 4.332 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.182 0.818 32 H 0.268 0.732 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 26.424 8.310 -9.427 29.261 hybrid contribution -1.668 -0.087 0.600 1.774 sum 24.757 8.223 -8.828 27.540 Atomic orbital electron populations 1.69604 1.09003 1.31518 1.37845 1.26772 0.95533 1.04012 0.90362 0.85545 0.78973 0.76240 0.80707 1.16494 1.20886 1.18056 1.19401 0.90234 0.94816 1.46620 0.91876 1.17931 0.93472 0.90178 0.87733 1.22267 0.94877 1.06584 1.05814 1.22441 0.91878 0.94391 0.93695 1.67416 1.39665 1.08734 1.12173 1.18198 0.87597 0.90237 0.90700 1.43358 1.07775 1.32629 1.46092 1.21056 0.82151 0.86764 0.81141 1.90768 1.67881 1.33377 1.45985 1.20913 0.79692 0.97150 1.02025 1.44655 1.05905 1.30925 1.56626 1.15824 0.81178 0.82646 0.79564 1.90922 1.78888 1.29176 1.49630 1.42390 1.04473 1.36205 1.49276 1.17754 0.91323 0.90549 0.95430 1.21186 0.95567 1.01087 0.99111 1.21329 0.99259 0.94125 0.97442 1.21487 0.98186 0.95510 1.00712 1.21308 0.94316 1.00708 0.96783 1.21351 1.00486 0.92970 1.01758 1.21447 0.92461 1.09930 1.09357 0.89462 0.86008 0.81784 0.73173 0.86426 0.86561 0.74734 0.73956 0.83668 0.82973 0.83647 0.84632 0.86349 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.86 13.92 21.84 0.30 -44.55 16 2 C 0.05 2.43 5.51 85.29 0.47 2.90 16 3 Si 0.96 39.52 24.52 68.60 1.68 41.20 16 4 H -0.24 -8.72 6.80 99.48 0.68 -8.05 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.94 6.49 99.48 0.65 -10.29 16 7 C -0.48 -25.52 9.67 23.52 0.23 -25.29 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 9 C 0.12 5.59 5.04 -21.12 -0.11 5.48 16 10 C -0.27 -12.03 9.90 22.84 0.23 -11.80 16 11 C 0.13 5.25 11.15 84.50 0.94 6.19 16 12 N -0.56 -24.14 7.89 -193.53 -1.53 -25.66 16 13 C 0.36 14.71 7.40 132.75 0.98 15.69 16 14 N -0.65 -19.85 5.39 -308.65 -1.66 -21.52 16 15 C 0.50 14.30 7.85 87.66 0.69 14.98 16 16 O -0.51 -18.04 13.96 -3.02 -0.04 -18.08 16 17 C 0.13 2.66 6.16 85.63 0.53 3.18 16 18 N -0.72 -14.81 5.53 -482.27 -2.67 -17.48 16 19 C 0.71 16.05 8.41 179.05 1.51 17.56 16 20 O -0.61 -17.62 13.78 -4.00 -0.06 -17.68 16 21 N -0.68 -11.85 5.34 -317.18 -1.69 -13.55 16 22 C 0.14 2.75 6.30 38.15 0.24 2.99 16 23 C -0.15 -2.10 9.97 22.39 0.22 -1.88 16 24 C -0.10 -1.23 10.04 22.25 0.22 -1.01 16 25 C -0.14 -1.82 10.04 22.29 0.22 -1.59 16 26 C -0.11 -1.89 10.04 22.25 0.22 -1.67 16 27 C -0.15 -3.13 8.70 22.39 0.19 -2.93 16 28 C -0.31 -13.41 6.79 22.98 0.16 -13.26 16 29 H 0.29 13.94 8.29 -92.71 -0.77 13.17 16 30 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.17 5.50 8.06 -2.91 -0.02 5.48 16 32 H 0.43 9.81 8.70 -92.71 -0.81 9.00 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.41 8.06 7.46 -92.71 -0.69 7.37 16 36 H 0.42 4.80 8.84 -92.71 -0.82 3.99 16 37 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.12 3.04 6.23 -2.91 -0.02 3.02 16 42 H 0.12 4.92 4.95 -2.91 -0.01 4.90 16 Total: -1.00 -71.74 360.83 -0.01 -71.75 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -1.29 Total: 36.01 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.95 Total: 9.55 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -7.25 Total: -122.75 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.10 Total: -35.76 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.68 Total: 41.20 kcal Total: -71.74 -0.01 -71.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610792906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.288 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds