Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48502 * 109.47255 * 274.86590 * 3 2 1 5 5 H 1.48503 * 109.46872 * 34.86444 * 3 2 1 6 6 H 1.48499 * 109.47292 * 154.86431 * 3 2 1 7 7 C 1.37880 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 4.97922 * 7 2 1 9 9 C 1.50699 * 119.99867 * 184.98473 * 7 2 1 10 10 N 1.46507 * 109.46927 * 184.99143 * 9 7 2 11 11 C 1.46499 * 119.99896 * 274.80667 * 10 9 7 12 12 C 1.50697 * 109.47003 * 274.92251 * 11 10 9 13 13 C 1.38675 * 120.41914 * 276.23997 * 12 11 10 14 14 C 1.38627 * 118.41933 * 179.78075 * 13 12 11 15 15 C 1.38225 * 119.16121 * 0.51745 * 14 13 12 16 16 N 1.31852 * 120.76673 * 359.72240 * 15 14 13 17 17 C 1.31886 * 121.72645 * 0.02562 * 16 15 14 18 18 C 1.34777 * 120.00074 * 94.80174 * 10 9 7 19 19 O 1.21507 * 119.99749 * 354.30337 * 18 10 9 20 20 C 1.48221 * 119.99899 * 174.57999 * 18 10 9 21 21 C 1.39626 * 119.65344 * 185.92883 * 20 18 10 22 22 C 1.38549 * 119.24499 * 179.78736 * 21 20 18 23 23 C 1.38583 * 118.55447 * 0.47837 * 22 21 20 24 24 C 1.39592 * 119.24396 * 359.74845 * 23 22 21 25 25 C 1.48228 * 119.64940 * 180.02562 * 24 23 22 26 26 N 1.34775 * 119.99741 * 185.33518 * 25 24 23 27 27 O 1.21501 * 120.00237 * 5.32528 * 25 24 23 28 28 N 1.32347 * 119.65365 * 6.20014 * 20 18 10 29 29 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47188 * 64.99242 * 9 7 2 31 31 H 1.08997 * 109.47053 * 304.98428 * 9 7 2 32 32 H 1.09007 * 109.47406 * 34.92486 * 11 10 9 33 33 H 1.09001 * 109.47021 * 154.92207 * 11 10 9 34 34 H 1.08006 * 120.78839 * 0.02562 * 13 12 11 35 35 H 1.08006 * 120.41969 * 180.21824 * 14 13 12 36 36 H 1.08003 * 119.61560 * 179.74509 * 15 14 13 37 37 H 1.07995 * 119.62563 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.37688 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.72056 * 180.19740 * 22 21 20 40 40 H 1.07994 * 120.37764 * 179.76172 * 23 22 21 41 41 H 0.97002 * 119.99914 * 5.02798 * 26 25 24 42 42 H 0.97002 * 120.00312 * 185.02908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3939 2.1058 -1.3950 5 1 1.5018 2.6208 0.8004 6 1 3.5944 1.4127 0.5947 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0821 9 6 3.5073 -1.1965 0.1129 10 7 4.0056 -2.5667 -0.0305 11 6 4.0605 -3.4519 1.1355 12 6 5.3475 -3.2178 1.8837 13 6 6.5154 -3.8519 1.4875 14 6 7.6766 -3.6031 2.2026 15 6 7.6297 -2.7457 3.2859 16 7 6.4999 -2.1640 3.6373 17 6 5.3774 -2.3734 2.9772 18 6 4.4134 -3.0129 -1.2351 19 8 4.2720 -2.3164 -2.2207 20 6 5.0288 -4.3557 -1.3586 21 6 5.5612 -4.7616 -2.5839 22 6 6.1384 -6.0168 -2.6886 23 6 6.1573 -6.8327 -1.5686 24 6 5.6028 -6.3662 -0.3756 25 6 5.6187 -7.2312 0.8280 26 7 4.9914 -6.8328 1.9524 27 8 6.1971 -8.2993 0.8009 28 7 5.0630 -5.1594 -0.3077 29 1 -0.4849 0.8400 0.0004 30 1 3.7988 -0.8039 1.0871 31 1 3.9320 -0.5715 -0.6727 32 1 3.2155 -3.2419 1.7913 33 1 4.0154 -4.4900 0.8060 34 1 6.5210 -4.5206 0.6393 35 1 8.6051 -4.0769 1.9200 36 1 8.5291 -2.5499 3.8508 37 1 4.4712 -1.8794 3.2949 38 1 5.5269 -4.1031 -3.4392 39 1 6.5602 -6.3537 -3.6240 40 1 6.5963 -7.8181 -1.6182 41 1 4.4687 -6.0157 1.9527 42 1 5.0627 -7.3632 2.7615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611615184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = 41.966951 kcal Electronic energy + Delta-G solvation = -30025.252636 eV Core-core repulsion = 25972.045683 eV Total energy + Delta-G solvation = -4053.206953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42177 -39.98418 -39.38066 -38.35664 -35.76222 -34.18670 -33.16349 -32.58656 -32.15975 -31.68891 -31.33263 -28.39049 -26.27732 -25.15851 -24.68475 -23.53028 -22.48022 -21.98885 -21.19367 -19.70697 -18.07313 -17.52363 -17.28117 -17.03167 -16.92795 -16.45355 -16.14100 -15.75702 -15.47658 -15.26542 -15.10002 -14.60409 -14.40901 -14.17749 -13.95837 -13.77802 -13.49343 -13.23496 -13.11002 -12.56845 -12.47465 -12.31691 -12.20425 -11.76986 -11.46510 -11.09054 -10.71051 -10.62278 -10.28183 -10.20227 -10.03045 -9.95479 -9.68305 -9.64278 -9.49225 -9.39890 -9.05897 -8.86014 -8.62594 -7.90852 -6.15515 -4.14935 0.24470 0.58121 1.17311 1.37857 2.30933 3.01260 3.06792 3.25972 3.32010 3.35333 3.39716 3.72991 3.81366 4.02222 4.35207 4.49172 4.54703 4.58777 4.64403 4.67827 4.89957 5.02861 5.05946 5.12988 5.18461 5.21202 5.23482 5.52854 5.60225 5.74392 5.77656 5.92966 6.03330 6.17347 6.35903 6.43902 6.46014 6.60940 6.78641 6.81474 6.91762 7.16905 7.25763 7.51850 7.90621 7.98173 8.06739 8.35393 8.62835 8.87916 9.44809 10.97285 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004674 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.274175 B = 5988.521500 C = 7293.615768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.216 3.784 10 N -0.560 5.560 11 C 0.116 3.884 12 C -0.138 4.138 13 C -0.069 4.069 14 C -0.181 4.181 15 C 0.091 3.909 16 N -0.487 5.487 17 C 0.111 3.889 18 C 0.557 3.443 19 O -0.524 6.524 20 C 0.093 3.907 21 C -0.087 4.087 22 C -0.083 4.083 23 C -0.094 4.094 24 C 0.056 3.944 25 C 0.582 3.418 26 N -0.834 5.834 27 O -0.536 6.536 28 N -0.423 5.423 29 H 0.265 0.735 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.411 0.589 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.651 -13.544 1.732 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.096 3.904 10 N -0.288 5.288 11 C -0.008 4.008 12 C -0.141 4.141 13 C -0.095 4.095 14 C -0.201 4.201 15 C -0.066 4.066 16 N -0.195 5.195 17 C -0.046 4.046 18 C 0.342 3.658 19 O -0.400 6.400 20 C -0.047 4.047 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.083 4.083 25 C 0.365 3.635 26 N -0.397 5.397 27 O -0.412 6.412 28 N -0.139 5.139 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.242 0.758 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 14.428 -12.811 2.546 19.462 hybrid contribution 0.493 0.363 -1.122 1.278 sum 14.921 -12.448 1.424 19.484 Atomic orbital electron populations 1.69891 1.06193 1.27101 1.49888 1.24817 0.94705 0.98869 0.94217 0.86898 0.80359 0.83993 0.78765 1.19951 1.20963 1.18987 1.21233 0.89028 0.95079 1.51706 0.90462 1.19808 0.95884 0.77474 0.97245 1.47785 1.59592 1.15129 1.06265 1.21435 0.93103 0.98545 0.87738 1.21381 0.97382 0.98043 0.97287 1.22024 0.91842 0.97180 0.98460 1.22134 0.99157 1.00968 0.97879 1.22687 0.96132 0.93157 0.94617 1.67713 0.99077 1.22399 1.30304 1.22901 0.96310 0.93892 0.91511 1.17734 0.79508 0.84294 0.84287 1.90791 1.56141 1.56630 1.36394 1.21669 0.98010 0.95294 0.89745 1.22411 0.93446 0.96456 0.98502 1.21701 0.96964 0.93019 0.99192 1.22261 0.96215 1.01277 0.91764 1.21299 0.99710 0.92422 0.94836 1.17759 0.78374 0.84650 0.82694 1.43746 1.53180 1.30041 1.12769 1.90830 1.44762 1.22039 1.83573 1.67928 1.12953 1.03265 1.29796 0.92460 0.95061 0.94287 0.89209 0.84522 0.84654 0.85573 0.83351 0.82429 0.82527 0.83106 0.82986 0.75801 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.15 27.42 -169.99 -4.66 16.49 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.14 6.65 56.52 0.38 -5.77 16 7 C -0.53 -14.48 9.93 -34.44 -0.34 -14.83 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.22 5.02 4.18 -5.19 -0.02 5.00 16 10 N -0.56 -10.87 2.44 -177.40 -0.43 -11.30 16 11 C 0.12 1.76 5.19 -5.20 -0.03 1.74 16 12 C -0.14 -1.93 5.48 -104.48 -0.57 -2.51 16 13 C -0.07 -0.88 9.31 -39.28 -0.37 -1.25 16 14 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 15 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 16 N -0.49 -7.16 10.36 -13.25 -0.14 -7.29 16 17 C 0.11 1.63 10.84 -17.55 -0.19 1.44 16 18 C 0.56 10.66 7.65 -12.16 -0.09 10.57 16 19 O -0.52 -11.81 15.90 5.36 0.09 -11.72 16 20 C 0.09 1.33 6.26 -83.02 -0.52 0.81 16 21 C -0.09 -1.00 9.63 -38.95 -0.38 -1.38 16 22 C -0.08 -0.69 10.16 -39.34 -0.40 -1.09 16 23 C -0.09 -0.87 9.63 -38.95 -0.38 -1.25 16 24 C 0.06 0.62 5.74 -83.03 -0.48 0.14 16 25 C 0.58 6.49 8.08 -12.16 -0.10 6.39 16 26 N -0.83 -7.34 8.85 30.62 0.27 -7.07 16 27 O -0.54 -7.26 17.17 5.37 0.09 -7.17 16 28 N -0.42 -5.23 2.65 -6.38 -0.02 -5.25 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.70 7.73 -51.93 -0.40 0.30 16 31 H 0.04 0.98 6.36 -51.93 -0.33 0.65 16 32 H 0.09 1.38 8.02 -51.92 -0.42 0.96 16 33 H 0.14 1.85 3.09 -77.98 -0.24 1.61 16 34 H 0.14 1.69 3.79 -52.48 -0.20 1.50 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.16 1.74 7.65 -52.49 -0.40 1.34 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.15 1.20 7.65 -52.49 -0.40 0.80 16 41 H 0.41 3.60 6.74 -40.82 -0.28 3.32 16 42 H 0.41 2.83 8.93 -40.82 -0.36 2.47 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -34.64 357.01 -7.50 -42.14 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.31 Total: 7.34 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -4.55 Total: 4.27 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.46 Total: -56.72 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.66 Total: 16.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.64 -7.50 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611615184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.108 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds