Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48502 * 109.47255 * 274.86590 * 3 2 1 5 5 H 1.48503 * 109.46872 * 34.86444 * 3 2 1 6 6 H 1.48499 * 109.47292 * 154.86431 * 3 2 1 7 7 C 1.37880 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 4.97922 * 7 2 1 9 9 C 1.50699 * 119.99867 * 184.98473 * 7 2 1 10 10 N 1.46507 * 109.46927 * 184.99143 * 9 7 2 11 11 C 1.46499 * 119.99896 * 274.80667 * 10 9 7 12 12 C 1.50697 * 109.47003 * 274.92251 * 11 10 9 13 13 C 1.38675 * 120.41914 * 276.23997 * 12 11 10 14 14 C 1.38627 * 118.41933 * 179.78075 * 13 12 11 15 15 C 1.38225 * 119.16121 * 0.51745 * 14 13 12 16 16 N 1.31852 * 120.76673 * 359.72240 * 15 14 13 17 17 C 1.31886 * 121.72645 * 0.02562 * 16 15 14 18 18 C 1.34777 * 120.00074 * 94.80174 * 10 9 7 19 19 O 1.21507 * 119.99749 * 354.30337 * 18 10 9 20 20 C 1.48221 * 119.99899 * 174.57999 * 18 10 9 21 21 C 1.39626 * 119.65344 * 185.92883 * 20 18 10 22 22 C 1.38549 * 119.24499 * 179.78736 * 21 20 18 23 23 C 1.38583 * 118.55447 * 0.47837 * 22 21 20 24 24 C 1.39592 * 119.24396 * 359.74845 * 23 22 21 25 25 C 1.48228 * 119.64940 * 180.02562 * 24 23 22 26 26 N 1.34775 * 119.99741 * 185.33518 * 25 24 23 27 27 O 1.21501 * 120.00237 * 5.32528 * 25 24 23 28 28 N 1.32347 * 119.65365 * 6.20014 * 20 18 10 29 29 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47188 * 64.99242 * 9 7 2 31 31 H 1.08997 * 109.47053 * 304.98428 * 9 7 2 32 32 H 1.09007 * 109.47406 * 34.92486 * 11 10 9 33 33 H 1.09001 * 109.47021 * 154.92207 * 11 10 9 34 34 H 1.08006 * 120.78839 * 0.02562 * 13 12 11 35 35 H 1.08006 * 120.41969 * 180.21824 * 14 13 12 36 36 H 1.08003 * 119.61560 * 179.74509 * 15 14 13 37 37 H 1.07995 * 119.62563 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.37688 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.72056 * 180.19740 * 22 21 20 40 40 H 1.07994 * 120.37764 * 179.76172 * 23 22 21 41 41 H 0.97002 * 119.99914 * 5.02798 * 26 25 24 42 42 H 0.97002 * 120.00312 * 185.02908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3939 2.1058 -1.3950 5 1 1.5018 2.6208 0.8004 6 1 3.5944 1.4127 0.5947 7 6 2.0046 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0821 9 6 3.5073 -1.1965 0.1129 10 7 4.0056 -2.5667 -0.0305 11 6 4.0605 -3.4519 1.1355 12 6 5.3475 -3.2178 1.8837 13 6 6.5154 -3.8519 1.4875 14 6 7.6766 -3.6031 2.2026 15 6 7.6297 -2.7457 3.2859 16 7 6.4999 -2.1640 3.6373 17 6 5.3774 -2.3734 2.9772 18 6 4.4134 -3.0129 -1.2351 19 8 4.2720 -2.3164 -2.2207 20 6 5.0288 -4.3557 -1.3586 21 6 5.5612 -4.7616 -2.5839 22 6 6.1384 -6.0168 -2.6886 23 6 6.1573 -6.8327 -1.5686 24 6 5.6028 -6.3662 -0.3756 25 6 5.6187 -7.2312 0.8280 26 7 4.9914 -6.8328 1.9524 27 8 6.1971 -8.2993 0.8009 28 7 5.0630 -5.1594 -0.3077 29 1 -0.4849 0.8400 0.0004 30 1 3.7988 -0.8039 1.0871 31 1 3.9320 -0.5715 -0.6727 32 1 3.2155 -3.2419 1.7913 33 1 4.0154 -4.4900 0.8060 34 1 6.5210 -4.5206 0.6393 35 1 8.6051 -4.0769 1.9200 36 1 8.5291 -2.5499 3.8508 37 1 4.4712 -1.8794 3.2949 38 1 5.5269 -4.1031 -3.4392 39 1 6.5602 -6.3537 -3.6240 40 1 6.5963 -7.8181 -1.6182 41 1 4.4687 -6.0157 1.9527 42 1 5.0627 -7.3632 2.7615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611615184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = 16.699923 kcal Electronic energy + Delta-G solvation = -30026.348297 eV Core-core repulsion = 25972.045683 eV Total energy + Delta-G solvation = -4054.302614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.43892 -41.00911 -40.52794 -39.51442 -37.20212 -35.20524 -34.79892 -33.70888 -33.33075 -32.70741 -32.47994 -30.16863 -27.50062 -26.07163 -25.98202 -24.62769 -23.92902 -23.08805 -22.19764 -20.96135 -19.17020 -19.02971 -18.62343 -18.18460 -18.00801 -17.46893 -17.18588 -16.96554 -16.65411 -16.41027 -16.22920 -15.98029 -15.65748 -15.35267 -15.16422 -14.74055 -14.68792 -14.58602 -14.33755 -14.23144 -13.66746 -13.54467 -13.27125 -13.20348 -12.98811 -12.63786 -12.54284 -12.06936 -11.80991 -11.71028 -11.23370 -11.06336 -10.83422 -10.80730 -10.70353 -10.56182 -10.42360 -10.18825 -9.92027 -9.49377 -8.34592 -6.38391 -0.64658 -0.30389 0.14039 0.35186 1.31807 1.34952 1.38193 1.43641 1.88048 2.03862 2.22097 2.29599 2.70409 2.76661 3.00545 3.01083 3.45695 3.56273 3.74404 3.82826 3.87590 3.92576 3.95756 4.11200 4.13584 4.23106 4.39354 4.49250 4.70623 4.73946 4.82736 4.85416 4.92251 4.97537 5.03552 5.20453 5.31448 5.38298 5.43810 5.61335 5.72698 5.79511 6.06120 6.20836 6.35788 6.52605 6.63138 7.03699 7.09627 7.11502 7.27288 8.81731 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004674 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.274175 B = 5988.521500 C = 7293.615768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.038 0.962 9 C 0.227 3.773 10 N -0.569 5.569 11 C 0.118 3.882 12 C -0.142 4.142 13 C -0.069 4.069 14 C -0.174 4.174 15 C 0.090 3.910 16 N -0.508 5.508 17 C 0.095 3.905 18 C 0.551 3.449 19 O -0.571 6.571 20 C 0.070 3.930 21 C -0.087 4.087 22 C -0.058 4.058 23 C -0.080 4.080 24 C 0.048 3.952 25 C 0.584 3.416 26 N -0.822 5.822 27 O -0.560 6.560 28 N -0.426 5.426 29 H 0.269 0.731 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.196 0.804 40 H 0.175 0.825 41 H 0.412 0.588 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.924 -15.114 1.582 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.057 0.943 9 C 0.105 3.895 10 N -0.297 5.297 11 C -0.004 4.004 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.194 4.194 15 C -0.067 4.067 16 N -0.217 5.217 17 C -0.062 4.062 18 C 0.338 3.662 19 O -0.450 6.450 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.083 4.083 23 C -0.100 4.100 24 C -0.091 4.091 25 C 0.367 3.633 26 N -0.386 5.386 27 O -0.438 6.438 28 N -0.142 5.142 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.197 0.803 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.213 0.787 40 H 0.192 0.808 41 H 0.243 0.757 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 17.704 -14.404 2.445 22.954 hybrid contribution -0.487 0.671 -1.070 1.354 sum 17.217 -13.733 1.375 22.066 Atomic orbital electron populations 1.70023 1.07929 1.28233 1.51588 1.25666 0.95482 1.02662 0.93925 0.85869 0.79853 0.79447 0.78740 1.20162 1.19870 1.17173 1.21428 0.91180 0.93613 1.50855 0.94339 1.19409 0.93101 0.80086 0.96909 1.47815 1.59600 1.14247 1.07997 1.21589 0.93743 0.98684 0.86432 1.21141 0.97184 0.98867 0.97277 1.22136 0.91780 0.96975 0.98623 1.22458 0.99777 1.00200 0.96950 1.23246 0.96284 0.92366 0.94843 1.67720 0.99693 1.23364 1.30911 1.22870 0.96550 0.94544 0.92200 1.18435 0.78654 0.85899 0.83227 1.90741 1.58058 1.58564 1.37659 1.20951 1.00709 0.93626 0.91663 1.22524 0.93187 0.97844 0.97192 1.22112 0.94811 0.90868 1.00557 1.22604 0.94444 1.02011 0.90971 1.21424 1.00122 0.91747 0.95800 1.17760 0.78202 0.84290 0.83008 1.43700 1.52210 1.29895 1.12771 1.90825 1.46082 1.22945 1.83959 1.67580 1.13371 1.03815 1.29439 0.92218 0.93993 0.95929 0.90371 0.82772 0.84113 0.82516 0.80327 0.83171 0.82554 0.78658 0.80782 0.75715 0.75025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.02 1.25 5.47 84.65 0.46 1.71 16 3 Si 0.94 44.52 27.42 68.60 1.88 46.40 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.99 6.65 99.48 0.66 -10.33 16 7 C -0.53 -30.39 9.93 25.60 0.25 -30.13 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.23 10.91 4.18 85.63 0.36 11.27 16 10 N -0.57 -22.91 2.44 -833.48 -2.03 -24.94 16 11 C 0.12 3.70 5.19 85.63 0.44 4.15 16 12 C -0.14 -3.93 5.48 -19.77 -0.11 -4.04 16 13 C -0.07 -1.65 9.31 22.47 0.21 -1.44 16 14 C -0.17 -3.55 10.11 22.36 0.23 -3.33 16 15 C 0.09 1.98 11.18 84.69 0.95 2.93 16 16 N -0.51 -14.37 10.36 -195.84 -2.03 -16.40 16 17 C 0.10 2.79 10.84 84.67 0.92 3.71 16 18 C 0.55 21.68 7.65 86.90 0.66 22.34 16 19 O -0.57 -26.79 15.90 -3.74 -0.06 -26.85 16 20 C 0.07 1.95 6.26 42.06 0.26 2.21 16 21 C -0.09 -1.81 9.63 22.68 0.22 -1.59 16 22 C -0.06 -0.73 10.16 22.43 0.23 -0.50 16 23 C -0.08 -1.16 9.63 22.68 0.22 -0.94 16 24 C 0.05 0.94 5.74 42.05 0.24 1.19 16 25 C 0.58 11.70 8.08 86.90 0.70 12.40 16 26 N -0.82 -13.15 8.85 -175.35 -1.55 -14.70 16 27 O -0.56 -13.76 17.17 -3.72 -0.06 -13.83 16 28 N -0.43 -9.99 2.65 -174.09 -0.46 -10.45 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.04 1.92 7.73 -2.39 -0.02 1.90 16 31 H 0.02 1.16 6.36 -2.39 -0.02 1.15 16 32 H 0.08 2.56 8.02 -2.38 -0.02 2.54 16 33 H 0.16 4.23 3.09 -53.83 -0.17 4.07 16 34 H 0.14 3.23 3.79 -2.91 -0.01 3.22 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.16 3.28 7.65 -2.91 -0.02 3.26 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.17 1.89 7.65 -2.91 -0.02 1.87 16 41 H 0.41 6.78 6.74 -92.71 -0.62 6.15 16 42 H 0.42 5.10 8.93 -92.71 -0.83 4.27 16 Total: -1.00 -79.03 357.01 1.69 -77.34 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.54 Total: 21.14 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.25 Total: 19.94 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -5.78 Total: -124.14 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.12 Total: -40.68 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -79.03 1.69 -77.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611615184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.038 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds