Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37912 * 120.08772 * 2 1 4 4 C 1.38381 * 120.17231 * 179.97438 * 3 2 1 5 5 C 1.38431 * 120.34643 * 0.02562 * 4 3 2 6 6 C 1.37862 * 120.17432 * 359.70117 * 5 4 3 7 7 C 1.39830 * 120.08894 * 179.97438 * 2 1 3 8 8 C 1.47171 * 120.16974 * 359.97438 * 7 2 1 9 9 O 1.21247 * 119.99969 * 354.08417 * 8 7 2 10 10 C 1.50701 * 119.99961 * 174.08891 * 8 7 2 11 11 N 1.46495 * 109.47029 * 179.97438 * 10 8 7 12 12 S 1.65597 * 119.99920 * 164.99672 * 11 10 8 13 13 O 1.42105 * 106.40332 * 311.46176 * 12 11 10 14 14 O 1.42098 * 106.40598 * 178.53994 * 12 11 10 15 15 N 1.65601 * 107.21725 * 65.00152 * 12 11 10 16 16 C 1.46500 * 119.99870 * 269.99684 * 15 12 11 17 17 C 1.46495 * 119.99940 * 90.00123 * 15 12 11 18 18 H 1.09001 * 109.47572 * 0.02562 * 17 15 12 19 19 C 1.53005 * 109.47235 * 119.99737 * 17 15 12 20 20 C 1.50703 * 109.47070 * 239.99829 * 17 15 12 21 21 H 1.07994 * 119.99802 * 354.59103 * 20 17 15 22 22 C 1.37878 * 119.99831 * 174.59160 * 20 17 15 23 23 N 1.31513 * 119.99975 * 357.87104 * 22 20 17 24 24 Si 1.86800 * 119.99586 * 178.15158 * 22 20 17 25 25 H 1.48494 * 109.47097 * 264.73416 * 24 22 20 26 26 H 1.48500 * 109.47480 * 24.74109 * 24 22 20 27 27 H 1.48507 * 109.47037 * 144.73859 * 24 22 20 28 28 H 1.08997 * 109.46918 * 264.32013 * 1 2 3 29 29 H 1.09004 * 109.46784 * 24.32461 * 1 2 3 30 30 H 1.08996 * 109.46897 * 144.31937 * 1 2 3 31 31 H 1.07993 * 119.91335 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.82594 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.91128 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.08740 * 180.27374 * 6 5 4 35 35 H 1.09004 * 109.47405 * 59.99739 * 10 8 7 36 36 H 1.09004 * 109.46729 * 299.99943 * 10 8 7 37 37 H 0.96996 * 120.00576 * 344.99769 * 11 10 8 38 38 H 1.08997 * 109.47517 * 269.99795 * 16 15 12 39 39 H 1.09000 * 109.47307 * 30.00119 * 16 15 12 40 40 H 1.08999 * 109.46993 * 150.00448 * 16 15 12 41 41 H 1.09000 * 109.47262 * 297.94931 * 19 17 15 42 42 H 1.08999 * 109.46978 * 57.94959 * 19 17 15 43 43 H 1.09001 * 109.47303 * 177.93983 * 19 17 15 44 44 H 0.97007 * 119.99605 * 180.28241 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1953 0.0005 5 6 4.2834 0.0017 0.0005 6 6 3.6067 -1.1994 0.0062 7 6 2.2081 -1.2099 0.0005 8 6 1.4780 -2.4877 0.0017 9 8 0.2704 -2.4959 0.1104 10 6 2.2313 -3.7861 -0.1321 11 7 1.2857 -4.9045 -0.1028 12 16 1.7683 -6.4100 -0.5958 13 8 2.4203 -6.2330 -1.8460 14 8 0.6501 -7.2684 -0.4172 15 7 2.9282 -6.9256 0.4677 16 6 4.3399 -6.6281 0.2128 17 6 2.5427 -7.6792 1.6633 18 1 1.4598 -7.8023 1.6818 19 6 3.2114 -9.0551 1.6366 20 6 2.9847 -6.9297 2.8938 21 1 3.5767 -6.0318 2.7955 22 6 2.6332 -7.3903 4.1449 23 7 1.8773 -8.4599 4.2634 24 14 3.2243 -6.4904 5.6714 25 1 4.4628 -7.1348 6.1774 26 1 3.5071 -5.0726 5.3320 27 1 2.1728 -6.5484 6.7185 28 1 -0.3633 -0.1017 1.0226 29 1 -0.3633 0.9365 -0.4233 30 1 -0.3633 -0.8347 -0.5994 31 1 1.6585 2.1286 -0.0004 32 1 4.1180 2.1330 0.0010 33 1 5.3634 0.0115 0.0005 34 1 4.1552 -2.1298 0.0107 35 1 2.9355 -3.8844 0.6940 36 1 2.7756 -3.7946 -1.0765 37 1 0.3768 -4.7634 0.2053 38 1 4.7805 -7.4332 -0.3751 39 1 4.4201 -5.6905 -0.3374 40 1 4.8695 -6.5392 1.1613 41 1 2.8638 -9.6112 0.7659 42 1 4.2931 -8.9324 1.5811 43 1 2.9540 -9.6019 2.5437 44 1 1.6266 -8.7815 5.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632604641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -83.904502 kcal Electronic energy + Delta-G solvation = -28130.598653 eV Core-core repulsion = 24175.084704 eV Total energy + Delta-G solvation = -3955.513949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48001 -38.43834 -36.71387 -36.18521 -35.27828 -34.62605 -32.84800 -32.60470 -31.82902 -29.17938 -27.98282 -26.54681 -25.55258 -25.19049 -23.76174 -21.67223 -20.86160 -20.17371 -18.96594 -17.54779 -16.99279 -16.72452 -16.35464 -16.28463 -15.75771 -15.58159 -15.40486 -15.01857 -14.39293 -14.37199 -13.83397 -13.57984 -13.38842 -13.33514 -13.25600 -12.82824 -12.68857 -12.30452 -12.26851 -12.02654 -11.99525 -11.83666 -11.62217 -11.53916 -11.42919 -11.32714 -11.23646 -11.03583 -10.86434 -10.47754 -10.31435 -10.10412 -9.67453 -9.44924 -9.26618 -9.15507 -8.98433 -8.50901 -8.02219 -6.12647 -4.20252 0.44519 1.09230 1.19853 2.22137 3.22443 3.29891 3.31224 3.39612 3.51380 3.81621 4.10966 4.33348 4.48250 4.58240 4.71467 4.86728 4.94642 5.04450 5.16479 5.19451 5.20748 5.35636 5.40596 5.52281 5.55088 5.60947 5.66902 5.86956 6.00444 6.05640 6.10150 6.15478 6.27415 6.33555 6.60034 6.62217 6.79729 6.82248 7.07003 7.20940 7.37275 7.48064 7.58282 7.75080 7.95893 8.21281 8.82493 9.45871 10.93953 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003944 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.098883 B = 7098.316602 C = 8286.954191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.022 4.022 3 C -0.139 4.139 4 C -0.085 4.085 5 C -0.139 4.139 6 C -0.066 4.066 7 C -0.170 4.170 8 C 0.396 3.604 9 O -0.437 6.437 10 C 0.078 3.922 11 N -1.121 6.121 12 S 2.784 3.216 13 O -0.998 6.998 14 O -0.976 6.976 15 N -0.990 5.990 16 C 0.103 3.897 17 C 0.266 3.734 18 H 0.064 0.936 19 C -0.140 4.140 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.895 3.105 25 H -0.281 1.281 26 H -0.274 1.274 27 H -0.286 1.286 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.421 0.579 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.033 0.967 43 H 0.082 0.918 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 17.218 -8.028 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 C -0.157 4.157 4 C -0.103 4.103 5 C -0.157 4.157 6 C -0.085 4.085 7 C -0.172 4.172 8 C 0.272 3.728 9 O -0.312 6.312 10 C -0.050 4.050 11 N -0.882 5.882 12 S 2.793 3.207 13 O -0.982 6.982 14 O -0.960 6.960 15 N -0.833 5.833 16 C -0.043 4.043 17 C 0.163 3.837 18 H 0.081 0.919 19 C -0.200 4.200 20 C -0.567 4.567 21 H 0.081 0.919 22 C -0.138 4.138 23 N -0.523 5.523 24 Si 0.723 3.277 25 H -0.207 1.207 26 H -0.199 1.199 27 H -0.212 1.212 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.729 16.581 -8.668 19.078 hybrid contribution 0.346 0.801 1.532 1.763 sum 4.074 17.382 -7.136 19.226 Atomic orbital electron populations 1.21144 0.90174 1.03237 1.03704 1.20242 0.96787 0.91850 0.93365 1.21065 0.94352 0.97515 1.02723 1.21412 0.94240 0.98415 0.96229 1.21136 1.00391 0.92180 1.02034 1.21527 0.92804 0.99140 0.94997 1.20266 0.94406 0.94088 1.08435 1.22439 0.88979 0.89640 0.71705 1.90460 1.16062 1.88835 1.35827 1.21470 0.93180 0.86063 1.04314 1.55917 1.22150 1.25301 1.84818 1.01786 0.73195 0.72426 0.73293 1.93538 1.76652 1.86520 1.41462 1.93607 1.52041 1.63635 1.86683 1.57745 1.16784 1.68322 1.40455 1.21235 0.82733 0.98648 1.01692 1.18755 0.96742 0.88084 0.80083 0.91851 1.21999 0.98871 0.98564 1.00559 1.21341 1.34507 1.10610 0.90204 0.91922 1.24934 0.94796 0.95080 0.98995 1.69925 1.35288 1.23084 1.23968 0.86545 0.78457 0.79936 0.82781 1.20689 1.19936 1.21184 0.90359 0.92174 0.88825 0.85499 0.85619 0.85232 0.84602 0.87834 0.87349 0.74356 0.93693 0.93317 0.90105 0.96579 0.94742 0.89955 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.77 36.01 0.32 -1.01 16 2 C -0.02 -0.24 5.92 -104.14 -0.62 -0.86 16 3 C -0.14 -1.21 9.66 -39.65 -0.38 -1.60 16 4 C -0.08 -0.66 10.04 -39.46 -0.40 -1.05 16 5 C -0.14 -1.13 10.03 -39.65 -0.40 -1.52 16 6 C -0.07 -0.63 9.47 -39.11 -0.37 -1.00 16 7 C -0.17 -1.96 5.87 -105.06 -0.62 -2.57 16 8 C 0.40 5.27 7.12 -30.68 -0.22 5.05 16 9 O -0.44 -6.68 12.70 5.59 0.07 -6.61 16 10 C 0.08 1.03 5.43 -5.20 -0.03 1.01 16 11 N -1.12 -18.56 5.99 -11.66 -0.07 -18.63 16 12 S 2.78 54.20 6.09 -107.50 -0.66 53.54 16 13 O -1.00 -19.81 16.68 -57.17 -0.95 -20.76 16 14 O -0.98 -22.55 16.70 -57.17 -0.95 -23.51 16 15 N -0.99 -19.75 3.12 -115.85 -0.36 -20.11 16 16 C 0.10 1.69 9.23 59.85 0.55 2.24 16 17 C 0.27 6.37 2.51 -69.08 -0.17 6.20 16 18 H 0.06 1.72 6.91 -51.93 -0.36 1.36 16 19 C -0.14 -3.25 9.08 37.16 0.34 -2.91 16 20 C -0.53 -13.17 8.02 -34.44 -0.28 -13.45 16 21 H 0.06 1.49 7.14 -52.49 -0.37 1.12 16 22 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 23 N -0.88 -24.29 11.81 55.43 0.65 -23.64 16 24 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.49 8.05 -51.93 -0.42 0.08 16 30 H 0.09 1.13 5.79 -51.93 -0.30 0.83 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 1.02 6.99 -52.49 -0.37 0.65 16 35 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 36 H 0.11 1.24 7.75 -51.93 -0.40 0.84 16 37 H 0.42 6.99 7.70 -34.46 -0.27 6.72 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 40 H 0.08 1.33 6.92 -51.93 -0.36 0.97 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.73 7.60 -51.93 -0.39 0.33 16 43 H 0.08 2.08 6.55 -51.93 -0.34 1.74 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -32.49 374.41 -10.08 -42.57 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.07 Total: 6.24 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.36 Total: -9.87 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.22 Total: -62.38 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -1.84 Total: -50.88 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.66 Total: 53.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.49 -10.08 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632604641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.332 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds