Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37912 * 120.08772 * 2 1 4 4 C 1.38381 * 120.17231 * 179.97438 * 3 2 1 5 5 C 1.38431 * 120.34643 * 0.02562 * 4 3 2 6 6 C 1.37862 * 120.17432 * 359.70117 * 5 4 3 7 7 C 1.39830 * 120.08894 * 179.97438 * 2 1 3 8 8 C 1.47171 * 120.16974 * 359.97438 * 7 2 1 9 9 O 1.21247 * 119.99969 * 354.08417 * 8 7 2 10 10 C 1.50701 * 119.99961 * 174.08891 * 8 7 2 11 11 N 1.46495 * 109.47029 * 179.97438 * 10 8 7 12 12 S 1.65597 * 119.99920 * 164.99672 * 11 10 8 13 13 O 1.42105 * 106.40332 * 311.46176 * 12 11 10 14 14 O 1.42098 * 106.40598 * 178.53994 * 12 11 10 15 15 N 1.65601 * 107.21725 * 65.00152 * 12 11 10 16 16 C 1.46500 * 119.99870 * 269.99684 * 15 12 11 17 17 C 1.46495 * 119.99940 * 90.00123 * 15 12 11 18 18 H 1.09001 * 109.47572 * 0.02562 * 17 15 12 19 19 C 1.53005 * 109.47235 * 119.99737 * 17 15 12 20 20 C 1.50703 * 109.47070 * 239.99829 * 17 15 12 21 21 H 1.07994 * 119.99802 * 354.59103 * 20 17 15 22 22 C 1.37878 * 119.99831 * 174.59160 * 20 17 15 23 23 N 1.31513 * 119.99975 * 357.87104 * 22 20 17 24 24 Si 1.86800 * 119.99586 * 178.15158 * 22 20 17 25 25 H 1.48494 * 109.47097 * 264.73416 * 24 22 20 26 26 H 1.48500 * 109.47480 * 24.74109 * 24 22 20 27 27 H 1.48507 * 109.47037 * 144.73859 * 24 22 20 28 28 H 1.08997 * 109.46918 * 264.32013 * 1 2 3 29 29 H 1.09004 * 109.46784 * 24.32461 * 1 2 3 30 30 H 1.08996 * 109.46897 * 144.31937 * 1 2 3 31 31 H 1.07993 * 119.91335 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.82594 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.91128 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.08740 * 180.27374 * 6 5 4 35 35 H 1.09004 * 109.47405 * 59.99739 * 10 8 7 36 36 H 1.09004 * 109.46729 * 299.99943 * 10 8 7 37 37 H 0.96996 * 120.00576 * 344.99769 * 11 10 8 38 38 H 1.08997 * 109.47517 * 269.99795 * 16 15 12 39 39 H 1.09000 * 109.47307 * 30.00119 * 16 15 12 40 40 H 1.08999 * 109.46993 * 150.00448 * 16 15 12 41 41 H 1.09000 * 109.47262 * 297.94931 * 19 17 15 42 42 H 1.08999 * 109.46978 * 57.94959 * 19 17 15 43 43 H 1.09001 * 109.47303 * 177.93983 * 19 17 15 44 44 H 0.97007 * 119.99605 * 180.28241 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1953 0.0005 5 6 4.2834 0.0017 0.0005 6 6 3.6067 -1.1994 0.0062 7 6 2.2081 -1.2099 0.0005 8 6 1.4780 -2.4877 0.0017 9 8 0.2704 -2.4959 0.1104 10 6 2.2313 -3.7861 -0.1321 11 7 1.2857 -4.9045 -0.1028 12 16 1.7683 -6.4100 -0.5958 13 8 2.4203 -6.2330 -1.8460 14 8 0.6501 -7.2684 -0.4172 15 7 2.9282 -6.9256 0.4677 16 6 4.3399 -6.6281 0.2128 17 6 2.5427 -7.6792 1.6633 18 1 1.4598 -7.8023 1.6818 19 6 3.2114 -9.0551 1.6366 20 6 2.9847 -6.9297 2.8938 21 1 3.5767 -6.0318 2.7955 22 6 2.6332 -7.3903 4.1449 23 7 1.8773 -8.4599 4.2634 24 14 3.2243 -6.4904 5.6714 25 1 4.4628 -7.1348 6.1774 26 1 3.5071 -5.0726 5.3320 27 1 2.1728 -6.5484 6.7185 28 1 -0.3633 -0.1017 1.0226 29 1 -0.3633 0.9365 -0.4233 30 1 -0.3633 -0.8347 -0.5994 31 1 1.6585 2.1286 -0.0004 32 1 4.1180 2.1330 0.0010 33 1 5.3634 0.0115 0.0005 34 1 4.1552 -2.1298 0.0107 35 1 2.9355 -3.8844 0.6940 36 1 2.7756 -3.7946 -1.0765 37 1 0.3768 -4.7634 0.2053 38 1 4.7805 -7.4332 -0.3751 39 1 4.4201 -5.6905 -0.3374 40 1 4.8695 -6.5392 1.1613 41 1 2.8638 -9.6112 0.7659 42 1 4.2931 -8.9324 1.5811 43 1 2.9540 -9.6019 2.5437 44 1 1.6266 -8.7815 5.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632604641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -105.887948 kcal Electronic energy + Delta-G solvation = -28131.551927 eV Core-core repulsion = 24175.084704 eV Total energy + Delta-G solvation = -3956.467223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35743 -39.26600 -38.36532 -37.87925 -36.93630 -35.84274 -34.47355 -33.57670 -32.60006 -30.97038 -28.88235 -27.46009 -27.19923 -26.95952 -24.52677 -22.64884 -22.40100 -21.12958 -20.38153 -18.93570 -18.53750 -18.26403 -17.69725 -17.45870 -16.98105 -16.54326 -16.44520 -16.34694 -15.84984 -15.17171 -15.16055 -14.88727 -14.62574 -14.52005 -14.36764 -14.03380 -13.80474 -13.70023 -13.45462 -13.31490 -13.23830 -13.17576 -12.99323 -12.95315 -12.94202 -12.75961 -12.63886 -12.61957 -12.22937 -12.15245 -11.97213 -11.87597 -11.18693 -10.74622 -10.49855 -10.46378 -9.93027 -9.67395 -9.66809 -8.09112 -6.22478 -0.34975 -0.33613 0.43492 1.35600 1.45882 1.47799 1.56379 1.94496 2.46341 2.58013 2.81607 2.83884 3.21799 3.43983 3.75626 3.88467 4.02173 4.12543 4.16404 4.21046 4.35734 4.41708 4.43905 4.70166 4.73678 4.75036 4.76962 4.84205 4.86107 4.97095 5.04364 5.04874 5.15631 5.25126 5.30907 5.38789 5.52942 5.59607 5.60966 5.64725 5.84931 5.94629 5.99490 6.11090 6.28676 6.41771 6.87869 7.47161 8.97406 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003944 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.098883 B = 7098.316602 C = 8286.954191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.042 4.042 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.141 4.141 6 C -0.072 4.072 7 C -0.194 4.194 8 C 0.396 3.604 9 O -0.469 6.469 10 C 0.067 3.933 11 N -1.120 6.120 12 S 2.802 3.198 13 O -1.000 7.000 14 O -1.019 7.019 15 N -0.994 5.994 16 C 0.092 3.908 17 C 0.271 3.729 18 H 0.023 0.977 19 C -0.134 4.134 20 C -0.526 4.526 21 H 0.077 0.923 22 C 0.014 3.986 23 N -0.921 5.921 24 Si 0.957 3.043 25 H -0.275 1.275 26 H -0.262 1.262 27 H -0.294 1.294 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 19.990 -8.266 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 C -0.162 4.162 4 C -0.097 4.097 5 C -0.158 4.158 6 C -0.090 4.090 7 C -0.196 4.196 8 C 0.275 3.725 9 O -0.347 6.347 10 C -0.060 4.060 11 N -0.882 5.882 12 S 2.811 3.189 13 O -0.983 6.983 14 O -1.003 7.003 15 N -0.836 5.836 16 C -0.053 4.053 17 C 0.166 3.834 18 H 0.041 0.959 19 C -0.194 4.194 20 C -0.566 4.566 21 H 0.095 0.905 22 C -0.186 4.186 23 N -0.561 5.561 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.186 1.186 27 H -0.221 1.221 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.628 19.369 -8.931 22.335 hybrid contribution -0.493 0.038 1.526 1.604 sum 6.134 19.408 -7.405 21.659 Atomic orbital electron populations 1.21064 0.90735 1.03374 1.02784 1.20407 0.96781 0.92671 0.94392 1.21341 0.95179 0.97438 1.02193 1.21840 0.93904 0.99764 0.94180 1.21528 1.01850 0.91655 1.00783 1.21807 0.91931 1.00743 0.94515 1.20233 0.95414 0.93164 1.10765 1.22684 0.88673 0.90429 0.70741 1.90460 1.17280 1.89221 1.37699 1.21844 0.92889 0.85033 1.06192 1.55679 1.22630 1.25291 1.84644 1.01094 0.72319 0.72426 0.73108 1.93527 1.76602 1.86719 1.41493 1.93546 1.53885 1.65662 1.87203 1.57591 1.18594 1.68405 1.39021 1.21542 0.80468 1.00798 1.02491 1.18411 0.94534 0.88951 0.81467 0.95886 1.21887 0.99914 0.98070 0.99518 1.21660 1.33740 1.10730 0.90431 0.90530 1.25720 0.95071 0.95797 1.01989 1.70073 1.36874 1.24789 1.24341 0.85563 0.77683 0.79373 0.79089 1.20077 1.18619 1.22079 0.91410 0.90166 0.90956 0.83562 0.82587 0.82501 0.82888 0.86135 0.85147 0.74521 0.92831 0.89854 0.89928 0.96089 0.92907 0.92437 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.77 71.24 0.63 -1.98 16 2 C -0.04 -0.87 5.92 -19.55 -0.12 -0.98 16 3 C -0.14 -2.15 9.66 22.23 0.21 -1.94 16 4 C -0.08 -0.92 10.04 22.35 0.22 -0.70 16 5 C -0.14 -1.72 10.03 22.23 0.22 -1.50 16 6 C -0.07 -1.15 9.47 22.58 0.21 -0.94 16 7 C -0.19 -4.22 5.87 -20.15 -0.12 -4.34 16 8 C 0.40 10.42 7.12 28.03 0.20 10.62 16 9 O -0.47 -14.85 12.70 -2.93 -0.04 -14.88 16 10 C 0.07 1.69 5.43 85.63 0.46 2.15 16 11 N -1.12 -36.93 5.99 -190.79 -1.14 -38.07 16 12 S 2.80 108.49 6.09 -56.49 -0.34 108.14 16 13 O -1.00 -38.30 16.68 -128.00 -2.14 -40.44 16 14 O -1.02 -48.58 16.70 -128.00 -2.14 -50.72 16 15 N -0.99 -38.72 3.12 -520.45 -1.62 -40.34 16 16 C 0.09 2.77 9.23 127.77 1.18 3.95 16 17 C 0.27 13.05 2.51 44.25 0.11 13.16 16 18 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 19 C -0.13 -6.25 9.08 71.98 0.65 -5.60 16 20 C -0.53 -25.96 8.02 25.60 0.21 -25.75 16 21 H 0.08 3.49 7.14 -2.91 -0.02 3.46 16 22 C 0.01 0.72 5.29 84.66 0.45 1.16 16 23 N -0.92 -51.67 11.81 21.45 0.25 -51.42 16 24 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.27 8.05 -2.38 -0.02 1.25 16 30 H 0.07 1.83 5.79 -2.39 -0.01 1.82 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.15 1.77 6.99 -2.91 -0.02 1.75 16 35 H 0.12 2.62 7.90 -2.39 -0.02 2.60 16 36 H 0.13 2.68 7.75 -2.39 -0.02 2.66 16 37 H 0.42 14.36 7.70 -96.76 -0.75 13.61 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.91 7.79 -2.39 -0.02 1.89 16 40 H 0.08 2.47 6.92 -2.39 -0.02 2.45 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 2.20 7.60 -2.39 -0.02 2.18 16 43 H 0.06 2.96 6.55 -2.39 -0.02 2.95 16 44 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -71.47 374.41 -0.33 -71.80 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.28 Total: 25.66 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.53 Total: -12.69 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -2.51 Total: -129.83 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -4.31 Total: -106.04 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 108.49 SS G_CDS: -0.34 Total: 108.14 kcal Total: -71.47 -0.33 -71.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632604641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.083 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds