Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31283 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48503 * 109.46724 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47347 * 300.00127 * 3 2 1 6 6 H 1.48502 * 109.47321 * 60.00580 * 3 2 1 7 7 C 1.39008 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00004 * 179.97438 * 7 2 1 9 9 N 1.37299 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.36432 * 126.05704 * 180.02562 * 9 7 2 11 11 C 1.35788 * 107.49846 * 180.02562 * 10 9 7 12 12 N 1.40296 * 126.10028 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.21404 * 119.99672 * 359.97438 * 13 12 11 15 15 C 1.49303 * 120.00135 * 179.97438 * 13 12 11 16 16 O 1.21367 * 119.99930 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00251 * 179.97438 * 15 13 12 18 18 C 1.47071 * 136.05460 * 359.94616 * 17 15 13 19 19 C 1.53499 * 87.98381 * 152.91429 * 18 17 15 20 20 C 1.47066 * 136.06191 * 179.97438 * 17 15 13 21 21 H 1.08999 * 113.47060 * 92.24294 * 20 17 15 22 22 C 1.50706 * 113.46361 * 321.86644 * 20 17 15 23 23 C 1.38233 * 120.00109 * 339.22797 * 22 20 17 24 24 C 1.38238 * 119.99754 * 179.76611 * 23 22 20 25 25 C 1.38234 * 120.00038 * 0.48818 * 24 23 22 26 26 C 1.38238 * 120.00047 * 359.78460 * 25 24 23 27 27 C 1.38235 * 120.00108 * 359.96171 * 26 25 24 28 28 C 1.40722 * 107.80055 * 0.26082 * 11 10 9 29 29 N 1.30884 * 108.37252 * 359.55468 * 28 11 10 30 30 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 31 31 H 1.08002 * 126.25253 * 0.06059 * 10 9 7 32 32 H 0.96998 * 119.99999 * 359.97438 * 12 11 10 33 33 H 1.08994 * 113.46973 * 267.69448 * 18 17 15 34 34 H 1.09004 * 113.46632 * 38.13882 * 18 17 15 35 35 H 1.09003 * 114.20841 * 272.48197 * 19 18 17 36 36 H 1.09004 * 114.20513 * 139.65523 * 19 18 17 37 37 H 1.08004 * 119.99934 * 0.02562 * 23 22 20 38 38 H 1.07999 * 119.99931 * 180.25459 * 24 23 22 39 39 H 1.08001 * 120.00294 * 179.76932 * 25 24 23 40 40 H 1.08000 * 120.00559 * 179.97438 * 26 25 24 41 41 H 1.07999 * 120.00165 * 179.97438 * 27 26 25 42 42 H 1.08000 * 125.81399 * 179.72392 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3462 -0.0006 5 1 1.8881 2.3964 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0078 -1.2039 -0.0005 8 1 3.0878 -1.2040 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6399 -0.0005 11 6 0.8570 -4.5386 -0.0011 12 7 0.9876 -5.9354 -0.0008 13 6 -0.1119 -6.7151 -0.0009 14 8 -1.2152 -6.2085 -0.0009 15 6 0.0271 -8.2016 -0.0012 16 8 1.1301 -8.7080 -0.0018 17 7 -1.0723 -8.9812 -0.0008 18 6 -2.5265 -8.7612 0.0008 19 6 -2.6781 -10.1191 -0.6987 20 6 -1.3458 -10.4262 -0.0013 21 1 -1.4643 -10.8460 0.9976 22 6 -0.3896 -11.2176 -0.8560 23 6 0.3263 -10.5879 -1.8569 24 6 1.2070 -11.3130 -2.6377 25 6 1.3642 -12.6697 -2.4242 26 6 0.6440 -13.3005 -1.4270 27 6 -0.2328 -12.5745 -0.6428 28 6 -0.3522 -3.8189 -0.0076 29 7 -0.0715 -2.5405 -0.0011 30 1 -0.4850 0.8401 0.0004 31 1 2.9301 -3.8701 0.0004 32 1 1.8691 -6.3401 -0.0005 33 1 -2.9607 -8.7369 1.0002 34 1 -2.8386 -7.9181 -0.6156 35 1 -2.6127 -10.0716 -1.7858 36 1 -3.5178 -10.7149 -0.3409 37 1 0.2007 -9.5286 -2.0261 38 1 1.7694 -10.8202 -3.4170 39 1 2.0494 -13.2369 -3.0367 40 1 0.7664 -14.3605 -1.2605 41 1 -0.7957 -13.0674 0.1360 42 1 -1.3432 -4.2483 -0.0138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746364517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 97.211233 kcal Electronic energy + Delta-G solvation = -28188.041216 eV Core-core repulsion = 24137.229834 eV Total energy + Delta-G solvation = -4050.811382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18643 -39.97084 -39.02991 -38.26921 -37.49290 -34.36721 -33.19445 -31.72249 -31.00453 -30.33974 -29.98560 -28.02603 -26.04543 -25.33413 -24.00730 -22.81793 -22.06331 -21.46316 -20.87200 -19.53001 -19.10490 -17.84510 -17.50040 -17.29267 -16.61622 -15.87701 -15.53968 -15.38161 -15.17822 -15.08196 -14.50192 -14.41384 -13.96762 -13.78445 -13.56533 -13.42819 -13.06958 -13.03986 -12.98310 -12.84591 -12.50396 -12.00173 -11.74931 -11.67906 -11.56367 -11.31296 -11.21115 -11.15443 -10.85038 -10.73261 -10.53576 -10.29824 -9.24503 -9.12116 -9.09141 -8.94099 -8.88467 -8.74708 -8.13742 -6.78517 -6.61441 -4.28543 1.13530 1.29727 1.66762 2.34683 2.91746 3.03193 3.09103 3.32118 3.53446 3.70668 3.71034 3.84491 4.11394 4.35619 4.44068 4.53786 4.63055 4.79793 4.86710 4.96239 4.96676 4.97340 5.00291 5.15748 5.30411 5.36259 5.40631 5.51378 5.70315 5.80702 5.87676 5.93307 6.19454 6.28738 6.35283 6.38375 6.46980 6.76367 6.84999 6.88193 6.94074 7.15535 7.42506 7.67836 7.82151 8.11303 8.17543 8.49105 8.69111 9.30448 9.59030 10.34437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025953 B = 0.002209 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.614512 B =12670.070801 C =13432.860481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.078 4.078 11 C -0.068 4.068 12 N -0.585 5.585 13 C 0.488 3.512 14 O -0.519 6.519 15 C 0.539 3.461 16 O -0.519 6.519 17 N -0.620 5.620 18 C 0.106 3.894 19 C -0.147 4.147 20 C 0.174 3.826 21 H 0.106 0.894 22 C -0.094 4.094 23 C -0.077 4.077 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.108 4.108 28 C -0.027 4.027 29 N -0.260 5.260 30 H 0.275 0.725 31 H 0.149 0.851 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -22.245 -2.122 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.453 4.453 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.174 4.174 12 N -0.228 5.228 13 C 0.268 3.732 14 O -0.396 6.396 15 C 0.324 3.676 16 O -0.394 6.394 17 N -0.356 5.356 18 C -0.016 4.016 19 C -0.185 4.185 20 C 0.071 3.929 21 H 0.123 0.877 22 C -0.095 4.095 23 C -0.095 4.095 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.203 4.203 29 N -0.091 5.091 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.243 0.757 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.152 -20.633 -2.109 20.978 hybrid contribution 1.410 -0.339 0.135 1.456 sum -1.742 -20.972 -1.974 21.136 Atomic orbital electron populations 1.70219 1.06169 1.28023 1.34979 1.25672 0.95741 1.00371 0.95389 0.85737 0.79673 0.80088 0.78516 1.18618 1.19859 1.19858 1.19971 0.91779 0.80447 1.53150 0.86401 1.44566 1.04089 1.03361 1.38523 1.21303 0.96976 0.85219 1.19410 1.17246 0.94629 0.80558 1.24937 1.42147 1.08535 1.04574 1.67519 1.19560 0.85305 0.86562 0.81738 1.90630 1.25388 1.74194 1.49348 1.19915 0.83026 0.87548 0.77122 1.90775 1.24614 1.75403 1.48627 1.49426 1.06829 1.07548 1.71825 1.23051 0.78413 0.98615 1.01524 1.23570 0.96203 0.97227 1.01477 1.21690 0.92248 0.80490 0.98433 0.87685 1.19769 0.98661 0.94028 0.97049 1.20944 0.95008 0.99614 0.93968 1.21143 0.98566 0.94286 0.99836 1.21155 0.99486 0.94833 0.98147 1.21056 0.97238 0.99742 0.96378 1.20882 0.98786 0.93269 0.99723 1.24134 0.97910 0.90751 1.07455 1.78261 0.90103 1.14967 1.25785 0.91411 0.83374 0.75657 0.89165 0.88477 0.88381 0.88608 0.86565 0.86128 0.86251 0.86139 0.86049 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.17 11.81 55.50 0.66 -20.51 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.73 29.55 -169.99 -5.02 13.71 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 8 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 9 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 10 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 11 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 12 N -0.58 -11.28 5.45 -10.45 -0.06 -11.33 16 13 C 0.49 9.06 7.85 -11.65 -0.09 8.96 16 14 O -0.52 -10.50 12.34 5.45 0.07 -10.44 16 15 C 0.54 8.65 6.77 -11.66 -0.08 8.57 16 16 O -0.52 -9.01 15.12 5.48 0.08 -8.93 16 17 N -0.62 -7.94 3.14 -179.38 -0.56 -8.51 16 18 C 0.11 1.05 7.61 -8.50 -0.06 0.99 16 19 C -0.15 -1.08 8.01 -26.23 -0.21 -1.29 16 20 C 0.17 1.69 4.25 -73.56 -0.31 1.38 16 21 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.09 -1.03 5.09 -104.62 -0.53 -1.57 16 23 C -0.08 -0.96 7.86 -39.58 -0.31 -1.28 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.00 9.74 -39.58 -0.39 -1.39 16 28 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 29 N -0.26 -7.48 10.39 30.81 0.32 -7.15 16 30 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 32 H 0.41 6.88 8.29 -40.82 -0.34 6.54 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.10 7.39 -51.93 -0.38 0.71 16 35 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.12 1.63 6.08 -52.48 -0.32 1.31 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -33.74 361.80 -8.19 -41.93 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -4.70 Total: 12.58 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.38 Total: -2.98 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.31 Total: -51.33 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.15 Total: -19.36 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.74 -8.19 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.139 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds