Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31283 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48503 * 109.46724 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47347 * 300.00127 * 3 2 1 6 6 H 1.48502 * 109.47321 * 60.00580 * 3 2 1 7 7 C 1.39008 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00004 * 179.97438 * 7 2 1 9 9 N 1.37299 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.36432 * 126.05704 * 180.02562 * 9 7 2 11 11 C 1.35788 * 107.49846 * 180.02562 * 10 9 7 12 12 N 1.40296 * 126.10028 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.21404 * 119.99672 * 359.97438 * 13 12 11 15 15 C 1.49303 * 120.00135 * 179.97438 * 13 12 11 16 16 O 1.21367 * 119.99930 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00251 * 179.97438 * 15 13 12 18 18 C 1.47071 * 136.05460 * 359.94616 * 17 15 13 19 19 C 1.53499 * 87.98381 * 152.91429 * 18 17 15 20 20 C 1.47066 * 136.06191 * 179.97438 * 17 15 13 21 21 H 1.08999 * 113.47060 * 92.24294 * 20 17 15 22 22 C 1.50706 * 113.46361 * 321.86644 * 20 17 15 23 23 C 1.38233 * 120.00109 * 339.22797 * 22 20 17 24 24 C 1.38238 * 119.99754 * 179.76611 * 23 22 20 25 25 C 1.38234 * 120.00038 * 0.48818 * 24 23 22 26 26 C 1.38238 * 120.00047 * 359.78460 * 25 24 23 27 27 C 1.38235 * 120.00108 * 359.96171 * 26 25 24 28 28 C 1.40722 * 107.80055 * 0.26082 * 11 10 9 29 29 N 1.30884 * 108.37252 * 359.55468 * 28 11 10 30 30 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 31 31 H 1.08002 * 126.25253 * 0.06059 * 10 9 7 32 32 H 0.96998 * 119.99999 * 359.97438 * 12 11 10 33 33 H 1.08994 * 113.46973 * 267.69448 * 18 17 15 34 34 H 1.09004 * 113.46632 * 38.13882 * 18 17 15 35 35 H 1.09003 * 114.20841 * 272.48197 * 19 18 17 36 36 H 1.09004 * 114.20513 * 139.65523 * 19 18 17 37 37 H 1.08004 * 119.99934 * 0.02562 * 23 22 20 38 38 H 1.07999 * 119.99931 * 180.25459 * 24 23 22 39 39 H 1.08001 * 120.00294 * 179.76932 * 25 24 23 40 40 H 1.08000 * 120.00559 * 179.97438 * 26 25 24 41 41 H 1.07999 * 120.00165 * 179.97438 * 27 26 25 42 42 H 1.08000 * 125.81399 * 179.72392 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 3.7068 1.3462 -0.0006 5 1 1.8881 2.3964 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0078 -1.2039 -0.0005 8 1 3.0878 -1.2040 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6399 -0.0005 11 6 0.8570 -4.5386 -0.0011 12 7 0.9876 -5.9354 -0.0008 13 6 -0.1119 -6.7151 -0.0009 14 8 -1.2152 -6.2085 -0.0009 15 6 0.0271 -8.2016 -0.0012 16 8 1.1301 -8.7080 -0.0018 17 7 -1.0723 -8.9812 -0.0008 18 6 -2.5265 -8.7612 0.0008 19 6 -2.6781 -10.1191 -0.6987 20 6 -1.3458 -10.4262 -0.0013 21 1 -1.4643 -10.8460 0.9976 22 6 -0.3896 -11.2176 -0.8560 23 6 0.3263 -10.5879 -1.8569 24 6 1.2070 -11.3130 -2.6377 25 6 1.3642 -12.6697 -2.4242 26 6 0.6440 -13.3005 -1.4270 27 6 -0.2328 -12.5745 -0.6428 28 6 -0.3522 -3.8189 -0.0076 29 7 -0.0715 -2.5405 -0.0011 30 1 -0.4850 0.8401 0.0004 31 1 2.9301 -3.8701 0.0004 32 1 1.8691 -6.3401 -0.0005 33 1 -2.9607 -8.7369 1.0002 34 1 -2.8386 -7.9181 -0.6156 35 1 -2.6127 -10.0716 -1.7858 36 1 -3.5178 -10.7149 -0.3409 37 1 0.2007 -9.5286 -2.0261 38 1 1.7694 -10.8202 -3.4170 39 1 2.0494 -13.2369 -3.0367 40 1 0.7664 -14.3605 -1.2605 41 1 -0.7957 -13.0674 0.1360 42 1 -1.3432 -4.2483 -0.0138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746364517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = 75.317750 kcal Electronic energy + Delta-G solvation = -28188.990588 eV Core-core repulsion = 24137.229834 eV Total energy + Delta-G solvation = -4051.760754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28787 -41.63922 -40.40069 -39.27108 -38.74659 -36.09563 -35.02987 -32.53836 -32.31378 -31.75021 -30.97799 -29.86718 -27.26506 -26.71691 -25.43431 -23.57746 -23.06418 -22.83134 -22.34843 -21.34280 -20.31945 -19.40871 -18.87064 -18.21778 -17.85045 -17.47502 -16.88207 -16.68703 -16.53125 -16.30540 -15.69930 -15.57761 -15.39130 -15.14657 -14.92627 -14.65135 -14.57238 -14.15990 -13.87258 -13.72360 -13.53690 -13.40283 -13.32086 -12.95565 -12.95175 -12.71423 -12.48346 -12.26658 -12.03931 -12.00975 -11.90370 -11.55814 -11.10339 -10.90301 -10.49093 -10.16713 -10.01445 -9.76527 -9.56455 -8.65142 -8.51065 -6.28777 0.27057 0.37597 0.53634 1.16162 1.26625 1.40194 1.58881 1.70153 2.01864 2.08422 2.38720 2.50740 2.79189 2.91645 3.05407 3.34038 3.46328 3.69605 3.89704 4.07432 4.16988 4.25516 4.31744 4.35694 4.37987 4.48386 4.50681 4.63657 4.74145 4.80799 4.93713 4.95626 4.96496 5.08045 5.14613 5.19813 5.24453 5.28501 5.55763 5.63458 5.68444 5.89045 6.12113 6.14595 6.32672 6.36340 6.63470 6.75201 7.05378 7.38578 7.59966 8.48420 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025953 B = 0.002209 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.614512 B =12670.070801 C =13432.860481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.006 4.006 3 Si 1.021 2.979 4 H -0.242 1.242 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.352 4.352 8 H 0.141 0.859 9 N -0.162 5.162 10 C -0.077 4.077 11 C -0.055 4.055 12 N -0.586 5.586 13 C 0.488 3.512 14 O -0.537 6.537 15 C 0.542 3.458 16 O -0.538 6.538 17 N -0.622 5.622 18 C 0.097 3.903 19 C -0.122 4.122 20 C 0.170 3.830 21 H 0.133 0.867 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.107 4.107 28 C -0.048 4.048 29 N -0.306 5.306 30 H 0.278 0.722 31 H 0.186 0.814 32 H 0.421 0.579 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.893 -24.867 -1.508 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.165 1.165 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.159 0.841 9 N 0.070 4.930 10 C -0.228 4.228 11 C -0.162 4.162 12 N -0.230 5.230 13 C 0.269 3.731 14 O -0.414 6.414 15 C 0.326 3.674 16 O -0.415 6.415 17 N -0.357 5.357 18 C -0.025 4.025 19 C -0.159 4.159 20 C 0.069 3.931 21 H 0.151 0.849 22 C -0.108 4.108 23 C -0.122 4.122 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.223 4.223 29 N -0.138 5.138 30 H 0.088 0.912 31 H 0.203 0.797 32 H 0.258 0.742 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.573 -23.324 -1.499 23.513 hybrid contribution 1.138 0.235 -0.082 1.165 sum -1.435 -23.090 -1.581 23.188 Atomic orbital electron populations 1.70382 1.08389 1.29252 1.36771 1.26902 0.96533 1.04328 0.94023 0.84514 0.78999 0.74266 0.78299 1.16461 1.19653 1.19632 1.20698 0.93029 0.80765 1.53840 0.84137 1.44847 1.03747 1.04705 1.39734 1.21975 0.98772 0.84261 1.17783 1.17297 0.93554 0.82386 1.22928 1.42106 1.09676 1.03043 1.68216 1.20253 0.84671 0.88110 0.80024 1.90612 1.26146 1.75103 1.49559 1.19255 0.83900 0.86187 0.78103 1.90759 1.25430 1.75133 1.50209 1.49678 1.07097 1.09365 1.69520 1.23347 0.76644 0.99626 1.02861 1.23514 0.96251 0.95366 1.00786 1.22126 0.92786 0.78183 1.00005 0.84926 1.19958 0.98932 0.95112 0.96826 1.20887 0.96907 0.98627 0.95778 1.21300 0.98898 0.95409 1.00206 1.21456 0.99832 0.94170 0.98660 1.21478 0.96274 1.01215 0.95457 1.21252 0.98643 0.92471 1.00150 1.24225 0.98838 0.90749 1.08472 1.78155 0.91793 1.16384 1.27484 0.91189 0.79668 0.74179 0.87014 0.90496 0.89132 0.84385 0.89262 0.86131 0.84184 0.83225 0.82926 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.91 11.81 21.66 0.26 -46.66 16 2 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 3 Si 1.02 38.42 29.55 68.60 2.03 40.44 16 4 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.35 -18.67 10.25 84.02 0.86 -17.81 16 8 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 9 N -0.16 -9.07 3.73 -189.98 -0.71 -9.78 16 10 C -0.08 -3.68 11.50 83.41 0.96 -2.72 16 11 C -0.06 -2.63 6.90 37.82 0.26 -2.37 16 12 N -0.59 -22.91 5.45 -305.33 -1.66 -24.58 16 13 C 0.49 18.52 7.85 87.22 0.69 19.21 16 14 O -0.54 -22.44 12.34 -3.42 -0.04 -22.49 16 15 C 0.54 17.53 6.77 87.22 0.59 18.12 16 16 O -0.54 -18.83 15.12 -3.30 -0.05 -18.88 16 17 N -0.62 -15.44 3.14 -839.79 -2.63 -18.07 16 18 C 0.10 1.78 7.61 83.18 0.63 2.42 16 19 C -0.12 -1.44 8.01 30.92 0.25 -1.20 16 20 C 0.17 2.88 4.25 41.04 0.17 3.05 16 21 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 22 C -0.11 -2.16 5.09 -19.86 -0.10 -2.26 16 23 C -0.10 -2.60 7.86 22.27 0.18 -2.43 16 24 C -0.14 -3.13 10.05 22.27 0.22 -2.90 16 25 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 27 C -0.11 -1.62 9.74 22.27 0.22 -1.41 16 28 C -0.05 -2.57 10.85 85.44 0.93 -1.65 16 29 N -0.31 -18.38 10.39 -56.43 -0.59 -18.97 16 30 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 31 H 0.19 7.15 8.06 -2.91 -0.02 7.13 16 32 H 0.42 14.22 8.29 -92.71 -0.77 13.45 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.75 7.39 -2.39 -0.02 1.73 16 35 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 36 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 2.65 6.08 -2.91 -0.02 2.64 16 38 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.18 9.25 5.92 -2.91 -0.02 9.23 16 Total: -1.00 -77.99 361.80 3.68 -74.32 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.31 Total: 39.98 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.77 Total: 4.67 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -5.34 Total: -118.05 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.09 Total: -41.36 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Total: -77.99 3.68 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746364517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.633 kcal (2) G-P(sol) polarization free energy of solvation -77.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds