Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48502 * 109.47075 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47074 * 120.00044 * 3 2 1 6 6 H 1.48504 * 109.47439 * 239.99931 * 3 2 1 7 7 C 1.38651 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99596 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00703 * 359.97438 * 7 2 1 10 10 C 1.35741 * 117.00506 * 174.94177 * 9 7 2 11 11 C 1.38876 * 120.07311 * 185.26117 * 10 9 7 12 12 C 1.38105 * 119.93326 * 179.74465 * 11 10 9 13 13 C 1.38297 * 120.06632 * 0.51258 * 12 11 10 14 14 C 1.50706 * 119.92942 * 179.74200 * 13 12 11 15 15 N 1.46900 * 109.46924 * 270.02453 * 14 13 12 16 16 C 1.46841 * 110.99780 * 294.20609 * 15 14 13 17 17 C 1.53035 * 109.52426 * 174.16548 * 16 15 14 18 18 C 1.53120 * 109.27838 * 59.17926 * 17 16 15 19 19 C 1.53115 * 109.16081 * 302.34784 * 18 17 16 20 20 H 1.09001 * 109.50580 * 297.71195 * 19 18 17 21 21 S 1.81406 * 109.50501 * 177.59384 * 19 18 17 22 22 N 1.65608 * 104.44580 * 60.20050 * 21 19 18 23 23 O 1.42097 * 110.54406 * 171.81851 * 21 19 18 24 24 O 1.42095 * 110.54313 * 308.57663 * 21 19 18 25 25 C 1.46852 * 110.99572 * 170.00167 * 15 14 13 26 26 C 1.38304 * 120.13911 * 359.76630 * 13 12 11 27 27 C 1.38095 * 120.06835 * 359.97438 * 26 13 12 28 28 H 0.97004 * 120.00180 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03202 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96284 * 180.23386 * 12 11 10 31 31 H 1.09000 * 109.46543 * 30.02502 * 14 13 12 32 32 H 1.09000 * 109.46616 * 150.01896 * 14 13 12 33 33 H 1.09001 * 109.46753 * 294.17852 * 16 15 14 34 34 H 1.08998 * 109.46593 * 54.14855 * 16 15 14 35 35 H 1.09009 * 109.50417 * 299.24158 * 17 16 15 36 36 H 1.09002 * 109.54089 * 179.14354 * 17 16 15 37 37 H 1.09002 * 109.52465 * 182.44666 * 18 17 16 38 38 H 1.09000 * 109.57314 * 62.28452 * 18 17 16 39 39 H 0.96991 * 119.99612 * 150.00612 * 22 21 19 40 40 H 0.97003 * 119.99889 * 329.99439 * 22 21 19 41 41 H 1.09004 * 109.46114 * 305.85141 * 25 15 14 42 42 H 1.08997 * 109.46217 * 65.83296 * 25 15 14 43 43 H 1.08006 * 119.95991 * 179.97438 * 26 13 12 44 44 H 1.08004 * 120.03195 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 1.2845 2.7464 0.0006 5 1 3.1033 1.6964 1.2126 6 1 3.1034 1.6964 -1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0698 -3.5046 -0.1077 11 6 1.4364 -4.7350 -0.2243 12 6 2.1872 -5.8885 -0.3384 13 6 3.5685 -5.8203 -0.3261 14 6 4.3847 -7.0815 -0.4451 15 7 4.6437 -7.6253 0.8948 16 6 5.4997 -6.7211 1.6732 17 6 5.6287 -7.2454 3.1051 18 6 6.2334 -8.6518 3.0760 19 6 5.3487 -9.5616 2.2192 20 1 4.3587 -9.6353 2.6694 21 16 6.0942 -11.2124 2.1199 22 7 6.1649 -11.7291 3.6917 23 8 5.2044 -12.1244 1.4910 24 8 7.4545 -11.1219 1.7192 25 6 5.2278 -8.9702 0.8129 26 6 4.2022 -4.5970 -0.2044 27 6 3.4571 -3.4395 -0.0952 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3578 -4.7893 -0.2294 30 1 1.6951 -6.8452 -0.4329 31 1 3.8355 -7.8153 -1.0351 32 1 5.3318 -6.8564 -0.9353 33 1 6.4872 -6.6711 1.2145 34 1 5.0562 -5.7255 1.6896 35 1 4.6431 -7.2826 3.5693 36 1 6.2764 -6.5826 3.6791 37 1 6.2870 -9.0465 4.0906 38 1 7.2351 -8.6098 2.6481 39 1 6.1044 -12.6757 3.8941 40 1 6.2670 -11.0850 4.4098 41 1 4.5868 -9.6081 0.2045 42 1 6.2166 -8.9096 0.3584 43 1 5.2811 -4.5471 -0.1947 44 1 3.9526 -2.4846 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746452695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -109.172210 kcal Electronic energy + Delta-G solvation = -27177.607562 eV Core-core repulsion = 23220.997923 eV Total energy + Delta-G solvation = -3956.609639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05047 -40.08467 -38.37864 -38.11390 -37.04551 -35.13276 -34.26575 -33.91604 -32.26430 -31.78230 -31.05619 -27.38298 -26.60631 -24.69456 -24.09623 -23.54986 -22.09159 -21.10020 -20.28291 -20.23005 -18.82097 -18.59884 -18.27572 -17.26535 -17.01970 -16.59610 -16.48109 -16.38108 -15.88067 -15.71915 -15.60470 -15.34685 -15.03856 -14.92839 -14.73480 -14.50030 -14.18393 -13.81712 -13.25461 -13.20865 -13.10491 -13.08354 -12.98528 -12.87747 -12.78833 -12.43373 -12.25975 -12.19723 -12.10503 -11.94289 -11.80330 -11.58058 -11.43109 -11.26958 -11.00690 -10.75569 -9.82990 -9.38186 -8.99183 -8.93154 -6.24621 -0.78557 0.53028 0.60144 1.48225 1.60444 1.78162 1.91956 2.35548 2.57025 2.76043 3.02562 3.16500 3.23708 3.35223 3.37319 3.68925 3.90560 3.95300 3.98571 4.11474 4.14436 4.25474 4.33612 4.41459 4.53922 4.55844 4.61007 4.65148 4.74626 4.76597 4.81913 4.99371 5.00026 5.10066 5.21820 5.22792 5.28444 5.35005 5.51705 5.70166 5.74206 5.99017 6.05953 6.08546 6.29287 6.36799 6.86308 7.62974 8.50487 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.002115 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.384005 B =13232.789896 C =13611.963583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.046 4.046 3 Si 1.144 2.856 4 H -0.274 1.274 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.486 4.486 8 H 0.091 0.909 9 O -0.253 6.253 10 C 0.116 3.884 11 C -0.205 4.205 12 C -0.046 4.046 13 C -0.148 4.148 14 C 0.108 3.892 15 N -0.529 5.529 16 C 0.040 3.960 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.566 4.566 20 H 0.165 0.835 21 S 2.636 3.364 22 N -1.235 6.235 23 O -1.000 7.000 24 O -0.995 6.995 25 C 0.058 3.942 26 C -0.059 4.059 27 C -0.240 4.240 28 H 0.260 0.740 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.427 0.573 40 H 0.427 0.573 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.135 0.865 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.919 -21.829 8.268 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.242 4.242 3 Si 0.960 3.040 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.108 0.892 9 O -0.161 6.161 10 C 0.067 3.933 11 C -0.225 4.225 12 C -0.065 4.065 13 C -0.149 4.149 14 C -0.019 4.019 15 N -0.254 5.254 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.677 4.677 20 H 0.183 0.817 21 S 2.729 3.271 22 N -0.913 5.913 23 O -0.990 6.990 24 O -0.984 6.984 25 C -0.071 4.071 26 C -0.078 4.078 27 C -0.259 4.259 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.257 0.743 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.153 0.847 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.336 -20.673 7.563 26.829 hybrid contribution 0.062 -0.918 0.185 0.939 sum 15.399 -21.592 7.747 27.629 Atomic orbital electron populations 1.70714 1.07768 1.30039 1.46748 1.28381 0.96914 1.04922 0.93943 0.82594 0.73775 0.68864 0.78764 1.19895 1.18362 1.18529 1.22565 0.93620 0.82926 1.57089 0.89151 1.83645 1.36890 1.13205 1.82377 1.19827 0.91610 0.87349 0.94547 1.20466 0.99931 0.90564 1.11511 1.20850 0.93351 0.96664 0.95593 1.19528 0.93565 0.94261 1.07567 1.20901 0.98090 0.93411 0.89468 1.61881 1.46863 1.01526 1.15162 1.22304 0.94839 0.96772 0.94880 1.21505 1.02046 0.95717 0.95369 1.21575 0.97747 0.95360 1.00286 1.30376 1.13894 1.18613 1.04826 0.81710 1.03959 0.74004 0.75959 0.73212 1.52818 1.93445 1.18891 1.26182 1.93564 1.67863 1.61871 1.75695 1.93576 1.36074 1.87093 1.81703 1.21895 0.99958 0.92056 0.93216 1.20913 0.99473 0.90991 0.96381 1.21216 0.93035 0.99971 1.11651 0.93192 0.86964 0.83521 0.88500 0.93106 0.94105 0.91284 0.91097 0.89495 0.87154 0.89900 0.74165 0.74304 0.88385 0.92816 0.84699 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.60 13.70 21.61 0.30 -57.30 16 2 C -0.05 -2.62 5.49 84.83 0.47 -2.16 16 3 Si 1.14 47.90 29.92 68.60 2.05 49.95 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.49 -28.39 9.49 67.92 0.64 -27.75 16 8 H 0.09 4.90 5.20 -2.91 -0.02 4.89 16 9 O -0.25 -15.06 9.16 -22.66 -0.21 -15.26 16 10 C 0.12 5.72 6.65 22.58 0.15 5.87 16 11 C -0.21 -8.53 9.99 22.39 0.22 -8.31 16 12 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 13 C -0.15 -4.33 4.89 -19.83 -0.10 -4.43 16 14 C 0.11 2.30 5.12 85.56 0.44 2.74 16 15 N -0.53 -10.34 4.65 -900.92 -4.19 -14.53 16 16 C 0.04 0.75 5.15 86.33 0.44 1.20 16 17 C -0.11 -1.47 6.09 30.65 0.19 -1.28 16 18 C -0.11 -1.01 5.12 30.67 0.16 -0.85 16 19 C -0.57 -6.22 3.02 30.65 0.09 -6.12 16 20 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 21 S 2.64 35.18 5.41 -56.49 -0.31 34.88 16 22 N -1.24 -7.01 9.34 37.02 0.35 -6.67 16 23 O -1.00 -21.20 18.10 -127.65 -2.31 -23.51 16 24 O -1.00 -20.52 17.92 -127.65 -2.29 -22.81 16 25 C 0.06 0.90 4.75 86.32 0.41 1.31 16 26 C -0.06 -1.94 7.86 22.25 0.17 -1.76 16 27 C -0.24 -10.25 9.17 22.39 0.21 -10.04 16 28 H 0.26 17.00 7.97 -92.71 -0.74 16.26 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 31 H 0.10 1.77 7.93 -2.39 -0.02 1.75 16 32 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.64 5.75 -2.39 -0.01 1.63 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.21 6.95 -2.39 -0.02 0.20 16 38 H 0.08 0.80 8.04 -2.39 -0.02 0.78 16 39 H 0.43 1.71 8.96 -96.75 -0.87 0.84 16 40 H 0.43 -0.04 7.64 -96.74 -0.74 -0.78 16 41 H 0.10 1.37 8.02 -2.39 -0.02 1.35 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.14 3.59 7.95 -2.91 -0.02 3.57 16 44 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 Total: -1.00 -83.91 366.94 -3.42 -87.34 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.53 Total: 20.77 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 3.71 Total: -52.86 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.55 Total: -78.50 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -4.81 Total: -61.58 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.05 Total: 49.95 kcal Atomic # 16 Polarization: 35.18 SS G_CDS: -0.31 Total: 34.88 kcal Total: -83.91 -3.42 -87.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746452695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.835 kcal (2) G-P(sol) polarization free energy of solvation -83.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds