Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47145 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46547 * 120.00410 * 3 2 1 7 7 C 1.38648 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00092 * 179.97438 * 7 2 1 9 9 O 1.34835 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99870 * 185.05829 * 9 7 2 11 11 C 1.38879 * 120.07095 * 354.46848 * 10 9 7 12 12 C 1.38096 * 119.93129 * 179.97438 * 11 10 9 13 13 C 1.38308 * 120.06656 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92991 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47374 * 89.99677 * 14 13 12 16 16 C 1.46855 * 110.99647 * 293.95591 * 15 14 13 17 17 C 1.53035 * 109.51726 * 185.83932 * 16 15 14 18 18 C 1.53120 * 109.28313 * 300.81784 * 17 16 15 19 19 C 1.53116 * 109.15844 * 57.65414 * 18 17 16 20 20 H 1.09001 * 109.50197 * 62.28872 * 19 18 17 21 21 S 1.81398 * 109.50478 * 182.36729 * 19 18 17 22 22 N 1.65594 * 104.44984 * 304.92521 * 21 19 18 23 23 O 1.42102 * 110.54206 * 56.54953 * 21 19 18 24 24 O 1.42099 * 110.54331 * 193.29657 * 21 19 18 25 25 C 1.46839 * 110.99931 * 58.16061 * 15 14 13 26 26 C 1.38302 * 120.13928 * 0.27233 * 13 12 11 27 27 C 1.38095 * 120.06596 * 359.49664 * 26 13 12 28 28 H 0.96996 * 119.99766 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03169 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96614 * 180.02562 * 12 11 10 31 31 H 1.09006 * 109.47002 * 329.99915 * 14 13 12 32 32 H 1.08991 * 109.47009 * 209.99985 * 14 13 12 33 33 H 1.08994 * 109.46142 * 65.82554 * 16 15 14 34 34 H 1.08997 * 109.45624 * 305.84494 * 16 15 14 35 35 H 1.09007 * 109.50236 * 180.87721 * 17 16 15 36 36 H 1.08997 * 109.53859 * 60.78298 * 17 16 15 37 37 H 1.09004 * 109.52099 * 297.75631 * 18 17 16 38 38 H 1.08997 * 109.57945 * 177.59369 * 18 17 16 39 39 H 0.97005 * 119.99809 * 150.00247 * 22 21 19 40 40 H 0.96997 * 120.00522 * 329.99941 * 22 21 19 41 41 H 1.09008 * 109.46521 * 54.14775 * 25 15 14 42 42 H 1.08999 * 109.47014 * 294.18212 * 25 15 14 43 43 H 1.07999 * 119.96333 * 179.72267 * 26 13 12 44 44 H 1.08009 * 120.03143 * 180.25203 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2025 -4.5970 0.2009 13 6 3.5687 -5.8202 0.3234 14 6 4.3850 -7.0814 0.4424 15 7 4.6573 -7.3567 1.8595 16 6 5.5247 -6.3231 2.4390 17 6 5.9046 -6.7169 3.8682 18 6 4.6320 -6.8702 4.7058 19 6 3.7245 -7.9172 4.0541 20 1 4.2321 -8.8817 4.0420 21 16 2.1830 -8.0558 5.0001 22 7 2.6756 -8.3818 6.5472 23 8 1.5413 -6.7915 5.0958 24 8 1.4612 -9.2160 4.6102 25 6 3.4078 -7.4886 2.6194 26 6 2.1874 -5.8889 0.3320 27 6 1.4367 -4.7344 0.2285 28 1 -0.4849 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2812 -4.5470 0.1909 31 1 5.3273 -6.9560 -0.0909 32 1 3.8311 -7.9147 0.0103 33 1 4.9949 -5.3707 2.4534 34 1 6.4279 -6.2273 1.8365 35 1 6.5357 -5.9421 4.3036 36 1 6.4469 -7.6624 3.8539 37 1 4.1099 -5.9145 4.7532 38 1 4.8945 -7.1922 5.7135 39 1 2.1392 -8.0862 7.2994 40 1 3.5004 -8.8685 6.7012 41 1 2.7734 -8.2392 2.1479 42 1 2.8879 -6.5307 2.6330 43 1 1.6955 -6.8460 0.4233 44 1 0.3580 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746452696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -73.639990 kcal Electronic energy + Delta-G solvation = -28070.095200 eV Core-core repulsion = 24115.026354 eV Total energy + Delta-G solvation = -3955.068846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83987 -38.62683 -37.16318 -36.55879 -36.05276 -34.04202 -33.30159 -32.26767 -31.42203 -30.19911 -29.40545 -26.22110 -25.17362 -23.90854 -22.99141 -21.87188 -20.77724 -19.96282 -19.49490 -18.06279 -17.87497 -17.48489 -16.98251 -16.37392 -15.93483 -15.36529 -15.17658 -14.96860 -14.59653 -14.53930 -14.27976 -13.97525 -13.66622 -13.57356 -13.32555 -12.94630 -12.78270 -12.46668 -12.29972 -12.20911 -12.10248 -12.05141 -11.83077 -11.53084 -11.43340 -11.27284 -11.18224 -10.93910 -10.91508 -10.73054 -10.67967 -10.61787 -10.47147 -10.26351 -9.38462 -8.86321 -8.36629 -8.23957 -7.24252 -6.48167 -4.07364 0.05659 2.14601 2.20372 2.66072 3.10505 3.11725 3.14885 3.47150 3.93553 3.94591 3.97120 4.22020 4.52123 4.54675 4.72618 4.85238 5.05478 5.10650 5.17797 5.21371 5.25692 5.34633 5.44470 5.51547 5.60705 5.63067 5.65656 5.70187 5.74641 5.78651 5.85277 5.97830 6.10510 6.15886 6.34674 6.63248 6.77503 6.82438 6.93438 6.95200 7.05080 7.19678 7.31421 7.39181 7.76093 7.96098 8.96796 9.66090 10.69504 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.003109 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.884680 B = 9003.169870 C = 9587.549064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.158 3.842 11 C -0.235 4.235 12 C -0.058 4.058 13 C -0.230 4.230 14 C 0.108 3.892 15 N -0.519 5.519 16 C 0.045 3.955 17 C -0.107 4.107 18 C -0.106 4.106 19 C -0.577 4.577 20 H 0.143 0.857 21 S 2.612 3.388 22 N -1.250 6.250 23 O -0.952 6.952 24 O -0.963 6.963 25 C 0.067 3.933 26 C -0.067 4.067 27 C -0.191 4.191 28 H 0.271 0.729 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.420 0.580 40 H 0.411 0.589 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 -16.110 10.355 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.103 3.897 11 C -0.255 4.255 12 C -0.077 4.077 13 C -0.233 4.233 14 C -0.019 4.019 15 N -0.242 5.242 16 C -0.083 4.083 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.688 4.688 20 H 0.161 0.839 21 S 2.703 3.297 22 N -0.922 5.922 23 O -0.941 6.941 24 O -0.952 6.952 25 C -0.063 4.063 26 C -0.085 4.085 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.249 0.751 40 H 0.237 0.763 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.263 -16.215 9.876 22.075 hybrid contribution 0.894 1.486 0.279 1.756 sum 12.156 -14.729 10.155 21.630 Atomic orbital electron populations 1.70031 1.05984 1.27899 1.45509 1.25303 0.95847 0.98872 0.96421 0.85777 0.78722 0.79729 0.79176 1.19483 1.20199 1.19472 1.21281 0.91758 0.80808 1.53159 0.89114 1.83984 1.34406 1.11496 1.77866 1.19399 0.90297 0.88050 0.91923 1.21149 0.93821 0.98912 1.11572 1.20586 0.98025 0.91825 0.97306 1.19903 0.94157 0.95357 1.13837 1.20980 0.98944 0.94317 0.87675 1.62410 1.13845 1.45574 1.02385 1.22186 0.97126 0.94074 0.94947 1.21506 0.96164 1.02240 0.94685 1.21415 0.96769 0.97812 0.98459 1.30452 1.20053 1.08869 1.09379 0.83923 1.04979 0.75960 0.74674 0.74114 1.53225 1.37939 1.74781 1.26297 1.93646 1.72465 1.43189 1.84803 1.93615 1.68295 1.50865 1.82385 1.21773 0.93543 1.01962 0.89048 1.20540 0.92971 0.96739 0.98300 1.20241 0.99716 0.90389 1.10704 0.91867 0.85607 0.87748 0.90383 0.90437 0.93086 0.90567 0.90940 0.91023 0.89882 0.90529 0.75066 0.76267 0.89632 0.91549 0.87234 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.02 9.49 30.88 0.29 -10.72 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -5.02 9.76 0.03 0.00 -5.02 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 12 C -0.06 -1.02 8.10 -39.61 -0.32 -1.34 16 13 C -0.23 -3.70 4.04 -104.57 -0.42 -4.12 16 14 C 0.11 1.35 5.55 -4.98 -0.03 1.32 16 15 N -0.52 -6.05 4.86 -236.11 -1.15 -7.20 16 16 C 0.04 0.49 4.82 -3.83 -0.02 0.47 16 17 C -0.11 -0.91 6.09 -26.65 -0.16 -1.07 16 18 C -0.11 -0.89 5.14 -26.61 -0.14 -1.02 16 19 C -0.58 -5.19 3.03 -26.65 -0.08 -5.27 16 20 H 0.14 0.93 8.14 -51.92 -0.42 0.51 16 21 S 2.61 27.54 5.42 -107.50 -0.58 26.96 16 22 N -1.25 -7.68 8.87 60.35 0.54 -7.15 16 23 O -0.95 -14.35 18.09 -57.54 -1.04 -15.39 16 24 O -0.96 -13.38 18.10 -57.54 -1.04 -14.42 16 25 C 0.07 0.80 3.84 -3.84 -0.01 0.79 16 26 C -0.07 -1.17 8.02 -39.61 -0.32 -1.49 16 27 C -0.19 -4.08 9.99 -39.40 -0.39 -4.47 16 28 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 29 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 30 H 0.10 1.54 8.03 -52.49 -0.42 1.12 16 31 H 0.08 0.89 8.00 -51.93 -0.42 0.48 16 32 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 34 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.40 7.81 -51.93 -0.41 -0.01 16 39 H 0.42 2.23 8.96 -34.46 -0.31 1.92 16 40 H 0.41 1.24 8.94 -34.47 -0.31 0.93 16 41 H 0.09 0.96 8.12 -51.92 -0.42 0.54 16 42 H 0.07 0.97 6.48 -51.93 -0.34 0.63 16 43 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 44 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -36.52 365.92 -10.38 -46.90 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.04 Total: 6.66 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -2.32 Total: -27.74 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.15 Total: -38.90 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -2.08 Total: -34.83 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.58 Total: 26.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.52 -10.38 -46.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746452696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.739 kcal (2) G-P(sol) polarization free energy of solvation -36.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds