Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47145 * 239.99918 * 3 2 1 5 5 H 1.48497 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46547 * 120.00410 * 3 2 1 7 7 C 1.38648 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00092 * 179.97438 * 7 2 1 9 9 O 1.34835 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99870 * 185.05829 * 9 7 2 11 11 C 1.38879 * 120.07095 * 354.46848 * 10 9 7 12 12 C 1.38096 * 119.93129 * 179.97438 * 11 10 9 13 13 C 1.38308 * 120.06656 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92991 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47374 * 89.99677 * 14 13 12 16 16 C 1.46855 * 110.99647 * 293.95591 * 15 14 13 17 17 C 1.53035 * 109.51726 * 185.83932 * 16 15 14 18 18 C 1.53120 * 109.28313 * 300.81784 * 17 16 15 19 19 C 1.53116 * 109.15844 * 57.65414 * 18 17 16 20 20 H 1.09001 * 109.50197 * 62.28872 * 19 18 17 21 21 S 1.81398 * 109.50478 * 182.36729 * 19 18 17 22 22 N 1.65594 * 104.44984 * 304.92521 * 21 19 18 23 23 O 1.42102 * 110.54206 * 56.54953 * 21 19 18 24 24 O 1.42099 * 110.54331 * 193.29657 * 21 19 18 25 25 C 1.46839 * 110.99931 * 58.16061 * 15 14 13 26 26 C 1.38302 * 120.13928 * 0.27233 * 13 12 11 27 27 C 1.38095 * 120.06596 * 359.49664 * 26 13 12 28 28 H 0.96996 * 119.99766 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03169 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96614 * 180.02562 * 12 11 10 31 31 H 1.09006 * 109.47002 * 329.99915 * 14 13 12 32 32 H 1.08991 * 109.47009 * 209.99985 * 14 13 12 33 33 H 1.08994 * 109.46142 * 65.82554 * 16 15 14 34 34 H 1.08997 * 109.45624 * 305.84494 * 16 15 14 35 35 H 1.09007 * 109.50236 * 180.87721 * 17 16 15 36 36 H 1.08997 * 109.53859 * 60.78298 * 17 16 15 37 37 H 1.09004 * 109.52099 * 297.75631 * 18 17 16 38 38 H 1.08997 * 109.57945 * 177.59369 * 18 17 16 39 39 H 0.97005 * 119.99809 * 150.00247 * 22 21 19 40 40 H 0.96997 * 120.00522 * 329.99941 * 22 21 19 41 41 H 1.09008 * 109.46521 * 54.14775 * 25 15 14 42 42 H 1.08999 * 109.47014 * 294.18212 * 25 15 14 43 43 H 1.07999 * 119.96333 * 179.72267 * 26 13 12 44 44 H 1.08009 * 120.03143 * 180.25203 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2025 -4.5970 0.2009 13 6 3.5687 -5.8202 0.3234 14 6 4.3850 -7.0814 0.4424 15 7 4.6573 -7.3567 1.8595 16 6 5.5247 -6.3231 2.4390 17 6 5.9046 -6.7169 3.8682 18 6 4.6320 -6.8702 4.7058 19 6 3.7245 -7.9172 4.0541 20 1 4.2321 -8.8817 4.0420 21 16 2.1830 -8.0558 5.0001 22 7 2.6756 -8.3818 6.5472 23 8 1.5413 -6.7915 5.0958 24 8 1.4612 -9.2160 4.6102 25 6 3.4078 -7.4886 2.6194 26 6 2.1874 -5.8889 0.3320 27 6 1.4367 -4.7344 0.2285 28 1 -0.4849 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2812 -4.5470 0.1909 31 1 5.3273 -6.9560 -0.0909 32 1 3.8311 -7.9147 0.0103 33 1 4.9949 -5.3707 2.4534 34 1 6.4279 -6.2273 1.8365 35 1 6.5357 -5.9421 4.3036 36 1 6.4469 -7.6624 3.8539 37 1 4.1099 -5.9145 4.7532 38 1 4.8945 -7.1922 5.7135 39 1 2.1392 -8.0862 7.2994 40 1 3.5004 -8.8685 6.7012 41 1 2.7734 -8.2392 2.1479 42 1 2.8879 -6.5307 2.6330 43 1 1.6955 -6.8460 0.4233 44 1 0.3580 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746452696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -104.573497 kcal Electronic energy + Delta-G solvation = -28071.436577 eV Core-core repulsion = 24115.026354 eV Total energy + Delta-G solvation = -3956.410224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16884 -40.04220 -38.22052 -38.03437 -37.04310 -35.07609 -34.26187 -33.93118 -32.34639 -31.69511 -30.80335 -27.76308 -26.75426 -24.83763 -24.02731 -23.44656 -22.14735 -20.91460 -20.31843 -19.89723 -18.86966 -18.62075 -18.26856 -17.24107 -16.87230 -16.53323 -16.47808 -16.20083 -15.94930 -15.87369 -15.61125 -15.29963 -15.20410 -14.67485 -14.58318 -14.37372 -14.08173 -13.62224 -13.60656 -13.25288 -13.19808 -13.10870 -12.97527 -12.94050 -12.69230 -12.55283 -12.42956 -12.32966 -12.18399 -12.11077 -11.76196 -11.54817 -11.32841 -11.21620 -11.04579 -10.80953 -9.83079 -9.42310 -8.95633 -8.50182 -6.19378 -0.78117 0.52497 0.60990 1.32053 1.43316 1.49233 1.92493 2.15221 2.62041 2.76101 3.03409 3.18335 3.19979 3.40085 3.47378 3.73479 3.96156 4.01475 4.03965 4.11174 4.18010 4.30121 4.37074 4.44888 4.52653 4.66615 4.70037 4.74506 4.82186 4.85287 4.93726 5.04833 5.06347 5.09900 5.13263 5.23487 5.27631 5.39866 5.50175 5.65906 5.68022 5.98451 6.00190 6.08592 6.16957 6.39687 6.93730 7.74284 8.73004 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.003109 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.884680 B = 9003.169870 C = 9587.549064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.103 0.897 9 O -0.234 6.234 10 C 0.115 3.885 11 C -0.243 4.243 12 C -0.052 4.052 13 C -0.197 4.197 14 C 0.106 3.894 15 N -0.503 5.503 16 C 0.035 3.965 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.556 4.556 20 H 0.181 0.819 21 S 2.620 3.380 22 N -1.231 6.231 23 O -1.007 7.007 24 O -1.001 7.001 25 C 0.053 3.947 26 C -0.063 4.063 27 C -0.211 4.211 28 H 0.273 0.727 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.020 0.980 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.426 0.574 40 H 0.429 0.571 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.141 0.859 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.928 -18.828 11.370 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.120 0.880 9 O -0.140 6.140 10 C 0.065 3.935 11 C -0.262 4.262 12 C -0.071 4.071 13 C -0.200 4.200 14 C -0.021 4.021 15 N -0.226 5.226 16 C -0.092 4.092 17 C -0.142 4.142 18 C -0.151 4.151 19 C -0.668 4.668 20 H 0.199 0.801 21 S 2.713 3.287 22 N -0.909 5.909 23 O -0.996 6.996 24 O -0.990 6.990 25 C -0.078 4.078 26 C -0.081 4.081 27 C -0.230 4.230 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.257 0.743 40 H 0.260 0.740 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.159 0.841 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.761 -19.008 10.922 27.000 hybrid contribution -0.318 1.932 0.031 1.958 sum 15.443 -17.076 10.952 25.496 Atomic orbital electron populations 1.70191 1.08151 1.28953 1.48631 1.26654 0.96862 1.02883 0.95698 0.84635 0.77406 0.74057 0.80018 1.17887 1.19577 1.18114 1.21808 0.92543 0.81401 1.53528 0.88007 1.83948 1.36125 1.12700 1.81257 1.19939 0.91820 0.87808 0.93966 1.21276 0.92868 1.00300 1.11801 1.20981 0.99735 0.90775 0.95589 1.20514 0.93857 0.96933 1.08655 1.21208 0.99613 0.92400 0.88914 1.62483 1.13199 1.45263 1.01633 1.22368 0.97139 0.92476 0.97263 1.21529 0.96161 1.03791 0.92697 1.21561 0.96406 0.96463 1.00719 1.30253 1.18636 1.11040 1.06886 0.80141 1.04372 0.76377 0.72962 0.74941 1.52719 1.38849 1.74684 1.24665 1.93585 1.74744 1.45435 1.85880 1.93573 1.70337 1.51674 1.83399 1.21892 0.93834 1.00751 0.91277 1.20939 0.93891 0.96584 0.96701 1.20474 0.99821 0.91062 1.11680 0.91785 0.86318 0.83949 0.87907 0.88606 0.96140 0.88835 0.89641 0.88802 0.92501 0.86662 0.74254 0.74027 0.88771 0.94911 0.84130 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.98 13.67 21.61 0.30 -57.69 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.42 29.55 68.60 2.03 45.45 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.42 -24.86 9.49 67.92 0.64 -24.21 16 8 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 9 O -0.23 -14.59 9.76 -22.82 -0.22 -14.81 16 10 C 0.12 5.95 6.65 22.58 0.15 6.10 16 11 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 12 C -0.05 -1.73 8.10 22.25 0.18 -1.55 16 13 C -0.20 -5.88 4.04 -19.83 -0.08 -5.96 16 14 C 0.11 2.17 5.55 85.56 0.48 2.64 16 15 N -0.50 -9.56 4.86 -900.93 -4.38 -13.93 16 16 C 0.04 0.64 4.82 86.32 0.42 1.06 16 17 C -0.10 -1.27 6.09 30.65 0.19 -1.08 16 18 C -0.11 -1.50 5.14 30.67 0.16 -1.34 16 19 C -0.56 -8.18 3.03 30.65 0.09 -8.09 16 20 H 0.18 1.36 8.14 -2.39 -0.02 1.34 16 21 S 2.62 52.31 5.42 -56.49 -0.31 52.00 16 22 N -1.23 -12.16 8.87 37.02 0.33 -11.83 16 23 O -1.01 -31.25 18.09 -127.65 -2.31 -33.56 16 24 O -1.00 -26.96 18.10 -127.65 -2.31 -29.27 16 25 C 0.05 1.13 3.84 86.33 0.33 1.46 16 26 C -0.06 -2.16 8.02 22.25 0.18 -1.98 16 27 C -0.21 -9.52 9.99 22.39 0.22 -9.29 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 30 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16 31 H 0.10 1.73 8.00 -2.38 -0.02 1.71 16 32 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 33 H 0.02 0.50 6.55 -2.39 -0.02 0.49 16 34 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.12 0.64 7.81 -2.39 -0.02 0.62 16 39 H 0.43 3.73 8.96 -96.74 -0.87 2.86 16 40 H 0.43 0.94 8.94 -96.75 -0.86 0.08 16 41 H 0.09 1.85 8.12 -2.38 -0.02 1.83 16 42 H 0.03 0.93 6.48 -2.39 -0.02 0.92 16 43 H 0.14 3.95 8.03 -2.91 -0.02 3.93 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -88.79 365.92 -3.93 -92.72 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.69 Total: 24.51 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.63 Total: -53.59 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.75 Total: -83.46 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: -4.84 Total: -77.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.31 Total: 52.00 kcal Total: -88.79 -3.93 -92.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746452696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.853 kcal (2) G-P(sol) polarization free energy of solvation -88.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds