Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86800 * 120.00467 * 2 1 4 4 H 1.48497 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46848 * 299.99523 * 3 2 1 6 6 H 1.48498 * 109.47269 * 59.99155 * 3 2 1 7 7 C 1.38993 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.37316 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.36482 * 126.06855 * 180.02562 * 9 7 2 11 11 C 1.35717 * 107.50700 * 180.02562 * 10 9 7 12 12 N 1.40494 * 126.08670 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99651 * 179.97438 * 12 11 10 14 14 O 1.21563 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.47997 * 119.99793 * 179.97438 * 13 12 11 16 16 C 1.39577 * 120.00145 * 180.02562 * 15 13 12 17 17 C 1.37799 * 120.00194 * 180.02562 * 16 15 13 18 18 C 1.39575 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.48015 * 119.99526 * 179.97438 * 18 17 16 20 20 O 1.21530 * 120.00363 * 359.72715 * 19 18 17 21 21 N 1.34784 * 119.99732 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99893 * 179.72888 * 21 19 18 23 23 C 1.53004 * 117.49451 * 223.61956 * 22 21 19 24 24 C 1.52995 * 59.99969 * 252.51107 * 23 22 21 25 25 C 1.39563 * 119.99959 * 0.25195 * 18 17 16 26 26 C 1.37799 * 120.00292 * 359.44553 * 25 18 17 27 27 C 1.40676 * 107.82058 * 0.25570 * 11 10 9 28 28 N 1.30897 * 108.38618 * 359.55746 * 27 11 10 29 29 H 0.97010 * 119.99383 * 0.02562 * 1 2 3 30 30 H 1.08001 * 126.24551 * 0.04562 * 10 9 7 31 31 H 0.97000 * 119.99812 * 359.97438 * 12 11 10 32 32 H 1.08001 * 119.99579 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.00302 * 179.97438 * 17 16 15 34 34 H 0.97005 * 119.99846 * 359.72676 * 21 19 18 35 35 H 1.08995 * 115.55407 * 9.32961 * 22 21 19 36 36 H 1.08994 * 117.49901 * 0.02562 * 23 22 21 37 37 H 1.09004 * 117.49460 * 145.02056 * 23 22 21 38 38 H 1.09000 * 117.50218 * 252.51072 * 24 23 22 39 39 H 1.09002 * 117.51638 * 107.48384 * 24 23 22 40 40 H 1.08005 * 119.99534 * 179.72793 * 25 18 17 41 41 H 1.07998 * 120.00590 * 180.29375 * 26 25 18 42 42 H 1.08002 * 125.80350 * 179.73824 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.7070 1.3461 0.0006 5 1 1.8884 2.3963 -1.2126 6 1 1.8883 2.3965 1.2124 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2039 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6404 0.0015 11 6 0.8573 -4.5386 0.0006 12 7 0.9883 -5.9374 0.0006 13 6 -0.1110 -6.7171 0.0001 14 8 -1.2159 -6.2100 -0.0009 15 6 0.0269 -8.1906 -0.0005 16 6 -1.1115 -8.9982 -0.0015 17 6 -0.9831 -10.3701 -0.0015 18 6 0.2854 -10.9523 0.0001 19 6 0.4233 -12.4260 0.0007 20 8 -0.5680 -13.1291 0.0048 21 7 1.6483 -12.9882 0.0017 22 6 1.7848 -14.4468 0.0083 23 6 2.8300 -15.0543 0.9461 24 6 3.0745 -15.0382 -0.5641 25 6 1.4237 -10.1449 0.0070 26 6 1.2954 -8.7729 0.0007 27 6 -0.3517 -3.8195 -0.0070 28 7 -0.0717 -2.5408 -0.0009 29 1 -0.4850 0.8402 -0.0004 30 1 2.9299 -3.8708 0.0031 31 1 1.8699 -6.3420 0.0010 32 1 -2.0931 -8.5476 -0.0024 33 1 -1.8640 -10.9950 -0.0019 34 1 2.4395 -12.4270 -0.0019 35 1 0.8623 -15.0061 -0.1473 36 1 3.4157 -14.3687 1.5584 37 1 2.5951 -16.0133 1.4078 38 1 3.0005 -15.9867 -1.0960 39 1 3.8213 -14.3421 -0.9460 40 1 2.4053 -10.5954 0.0127 41 1 2.1763 -8.1480 0.0013 42 1 -1.3425 -4.2493 -0.0136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756959563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = 73.905877 kcal Electronic energy + Delta-G solvation = -26894.965019 eV Core-core repulsion = 22843.143041 eV Total energy + Delta-G solvation = -4051.821978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72312 -40.03962 -39.15736 -37.95747 -37.26814 -34.39287 -33.55811 -33.27596 -31.47042 -31.09264 -30.24094 -27.85921 -25.60983 -24.60541 -22.99948 -22.91122 -22.38069 -21.47961 -20.94779 -20.35330 -19.45327 -18.52383 -17.68160 -17.23317 -16.94458 -15.66875 -15.52085 -15.35764 -15.28126 -15.02017 -14.97748 -14.68106 -14.38082 -14.08019 -13.89533 -13.59453 -13.29566 -13.16358 -12.97572 -12.64801 -12.49363 -12.11923 -11.85699 -11.72061 -11.50793 -11.37525 -11.31051 -11.04210 -10.98522 -10.53796 -10.36912 -10.26173 -9.37795 -9.37071 -9.31850 -9.22643 -9.11975 -8.85955 -8.10912 -6.75797 -6.60037 -4.27066 0.25260 1.06683 2.24540 2.56091 2.88487 3.02430 3.05072 3.08763 3.40816 3.43991 3.56565 3.82748 3.84046 4.19711 4.23554 4.40266 4.40839 4.43315 4.48790 4.57859 4.65343 4.97278 4.98227 5.03254 5.10829 5.16932 5.27941 5.38880 5.41922 5.54591 5.64734 5.87145 5.95090 6.06108 6.10613 6.20005 6.39672 6.51397 6.83925 6.90387 7.00129 7.04680 7.18327 7.76379 7.81186 8.08521 8.21395 8.56099 8.75505 9.32641 9.61790 10.35868 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.001740 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.888626 B =16089.683494 C =16958.062194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.083 4.083 11 C -0.064 4.064 12 N -0.612 5.612 13 C 0.533 3.467 14 O -0.527 6.527 15 C -0.086 4.086 16 C -0.071 4.071 17 C -0.063 4.063 18 C -0.125 4.125 19 C 0.566 3.434 20 O -0.532 6.532 21 N -0.700 5.700 22 C 0.079 3.921 23 C -0.193 4.193 24 C -0.189 4.189 25 C -0.092 4.092 26 C -0.100 4.100 27 C -0.029 4.029 28 N -0.260 5.260 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.396 0.604 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.402 0.598 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -24.205 0.029 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.092 4.908 10 C -0.234 4.234 11 C -0.169 4.169 12 N -0.254 5.254 13 C 0.319 3.681 14 O -0.405 6.405 15 C -0.089 4.089 16 C -0.090 4.090 17 C -0.082 4.082 18 C -0.129 4.129 19 C 0.354 3.646 20 O -0.409 6.409 21 N -0.351 5.351 22 C -0.027 4.027 23 C -0.232 4.232 24 C -0.227 4.227 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.205 4.205 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.230 0.770 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.238 0.762 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.507 -22.969 0.033 23.873 hybrid contribution 1.913 -0.119 0.014 1.917 sum 8.419 -23.088 0.047 24.576 Atomic orbital electron populations 1.70229 1.06152 1.27977 1.35060 1.25660 0.95722 1.00330 0.95452 0.85753 0.79612 0.80195 0.78523 1.18674 1.19873 1.19879 1.19941 0.91712 0.80517 1.53313 0.86496 1.44574 1.04084 1.03332 1.38798 1.21249 0.96799 0.85355 1.19998 1.17252 0.94453 0.80968 1.24276 1.42392 1.08052 1.04719 1.70248 1.18052 0.84741 0.85708 0.79555 1.90684 1.25561 1.74261 1.50023 1.20337 0.94131 0.93818 1.00646 1.21331 0.99364 0.92399 0.95874 1.21252 0.96857 0.94516 0.95600 1.19951 0.94847 0.92139 1.05938 1.18337 0.82921 0.87786 0.75573 1.90770 1.37286 1.63620 1.49193 1.45296 1.08394 1.06186 1.75195 1.21625 0.95680 0.81150 1.04240 1.23445 1.03200 1.03359 0.93152 1.23395 0.99422 1.03377 0.96525 1.21125 0.97521 0.93526 0.98941 1.21273 0.96862 0.94791 0.98959 1.24143 0.98061 0.90714 1.07537 1.78271 0.90079 1.15056 1.25724 0.91431 0.83636 0.76960 0.83563 0.83979 0.76171 0.84288 0.88361 0.87844 0.87721 0.88338 0.85369 0.84799 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.24 11.81 55.50 0.66 -20.59 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.63 29.55 -169.99 -5.02 13.60 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.32 -8.39 10.25 -14.82 -0.15 -8.54 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.80 3.74 -11.40 -0.04 -3.84 16 10 C -0.08 -1.90 11.49 -16.38 -0.19 -2.09 16 11 C -0.06 -1.44 6.90 -83.87 -0.58 -2.02 16 12 N -0.61 -10.52 5.41 -10.81 -0.06 -10.58 16 13 C 0.53 9.23 7.75 -12.26 -0.09 9.14 16 14 O -0.53 -11.17 13.48 5.31 0.07 -11.10 16 15 C -0.09 -1.11 5.88 -104.90 -0.62 -1.73 16 16 C -0.07 -0.87 9.58 -39.24 -0.38 -1.24 16 17 C -0.06 -0.69 9.58 -39.24 -0.38 -1.07 16 18 C -0.13 -1.24 5.88 -104.90 -0.62 -1.86 16 19 C 0.57 5.86 7.78 -12.25 -0.10 5.76 16 20 O -0.53 -7.29 15.90 5.34 0.08 -7.21 16 21 N -0.70 -5.01 5.52 -54.70 -0.30 -5.31 16 22 C 0.08 0.52 6.43 -67.93 -0.44 0.09 16 23 C -0.19 -0.92 10.46 -26.73 -0.28 -1.20 16 24 C -0.19 -0.84 10.45 -26.73 -0.28 -1.12 16 25 C -0.09 -0.73 9.53 -39.25 -0.37 -1.11 16 26 C -0.10 -0.95 9.53 -39.24 -0.37 -1.32 16 27 C -0.03 -0.75 10.85 -17.03 -0.18 -0.94 16 28 N -0.26 -7.50 10.39 30.80 0.32 -7.18 16 29 H 0.28 6.93 8.31 -40.82 -0.34 6.60 16 30 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.40 5.06 6.85 -40.82 -0.28 4.78 16 32 H 0.15 1.82 7.64 -52.49 -0.40 1.42 16 33 H 0.14 1.48 7.64 -52.49 -0.40 1.07 16 34 H 0.40 1.82 6.85 -40.82 -0.28 1.54 16 35 H 0.14 1.10 7.40 -51.93 -0.38 0.72 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.13 0.56 6.39 -52.48 -0.34 0.22 16 41 H 0.13 0.96 6.39 -52.49 -0.34 0.62 16 42 H 0.18 4.54 5.92 -52.49 -0.31 4.23 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -35.44 366.77 -8.27 -43.71 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.39 Total: 11.15 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -5.12 Total: -8.18 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.57 Total: -47.50 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.44 -8.27 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756959563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.619 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds