Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86800 * 120.00467 * 2 1 4 4 H 1.48497 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46848 * 299.99523 * 3 2 1 6 6 H 1.48498 * 109.47269 * 59.99155 * 3 2 1 7 7 C 1.38993 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.37316 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.36482 * 126.06855 * 180.02562 * 9 7 2 11 11 C 1.35717 * 107.50700 * 180.02562 * 10 9 7 12 12 N 1.40494 * 126.08670 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99651 * 179.97438 * 12 11 10 14 14 O 1.21563 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.47997 * 119.99793 * 179.97438 * 13 12 11 16 16 C 1.39577 * 120.00145 * 180.02562 * 15 13 12 17 17 C 1.37799 * 120.00194 * 180.02562 * 16 15 13 18 18 C 1.39575 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.48015 * 119.99526 * 179.97438 * 18 17 16 20 20 O 1.21530 * 120.00363 * 359.72715 * 19 18 17 21 21 N 1.34784 * 119.99732 * 179.97438 * 19 18 17 22 22 C 1.46499 * 119.99893 * 179.72888 * 21 19 18 23 23 C 1.53004 * 117.49451 * 223.61956 * 22 21 19 24 24 C 1.52995 * 59.99969 * 252.51107 * 23 22 21 25 25 C 1.39563 * 119.99959 * 0.25195 * 18 17 16 26 26 C 1.37799 * 120.00292 * 359.44553 * 25 18 17 27 27 C 1.40676 * 107.82058 * 0.25570 * 11 10 9 28 28 N 1.30897 * 108.38618 * 359.55746 * 27 11 10 29 29 H 0.97010 * 119.99383 * 0.02562 * 1 2 3 30 30 H 1.08001 * 126.24551 * 0.04562 * 10 9 7 31 31 H 0.97000 * 119.99812 * 359.97438 * 12 11 10 32 32 H 1.08001 * 119.99579 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.00302 * 179.97438 * 17 16 15 34 34 H 0.97005 * 119.99846 * 359.72676 * 21 19 18 35 35 H 1.08995 * 115.55407 * 9.32961 * 22 21 19 36 36 H 1.08994 * 117.49901 * 0.02562 * 23 22 21 37 37 H 1.09004 * 117.49460 * 145.02056 * 23 22 21 38 38 H 1.09000 * 117.50218 * 252.51072 * 24 23 22 39 39 H 1.09002 * 117.51638 * 107.48384 * 24 23 22 40 40 H 1.08005 * 119.99534 * 179.72793 * 25 18 17 41 41 H 1.07998 * 120.00590 * 180.29375 * 26 25 18 42 42 H 1.08002 * 125.80350 * 179.73824 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.7070 1.3461 0.0006 5 1 1.8884 2.3963 -1.2126 6 1 1.8883 2.3965 1.2124 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2039 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6404 0.0015 11 6 0.8573 -4.5386 0.0006 12 7 0.9883 -5.9374 0.0006 13 6 -0.1110 -6.7171 0.0001 14 8 -1.2159 -6.2100 -0.0009 15 6 0.0269 -8.1906 -0.0005 16 6 -1.1115 -8.9982 -0.0015 17 6 -0.9831 -10.3701 -0.0015 18 6 0.2854 -10.9523 0.0001 19 6 0.4233 -12.4260 0.0007 20 8 -0.5680 -13.1291 0.0048 21 7 1.6483 -12.9882 0.0017 22 6 1.7848 -14.4468 0.0083 23 6 2.8300 -15.0543 0.9461 24 6 3.0745 -15.0382 -0.5641 25 6 1.4237 -10.1449 0.0070 26 6 1.2954 -8.7729 0.0007 27 6 -0.3517 -3.8195 -0.0070 28 7 -0.0717 -2.5408 -0.0009 29 1 -0.4850 0.8402 -0.0004 30 1 2.9299 -3.8708 0.0031 31 1 1.8699 -6.3420 0.0010 32 1 -2.0931 -8.5476 -0.0024 33 1 -1.8640 -10.9950 -0.0019 34 1 2.4395 -12.4270 -0.0019 35 1 0.8623 -15.0061 -0.1473 36 1 3.4157 -14.3687 1.5584 37 1 2.5951 -16.0133 1.4078 38 1 3.0005 -15.9867 -1.0960 39 1 3.8213 -14.3421 -0.9460 40 1 2.4053 -10.5954 0.0127 41 1 2.1763 -8.1480 0.0013 42 1 -1.3425 -4.2493 -0.0136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756959563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = 49.156894 kcal Electronic energy + Delta-G solvation = -26896.038215 eV Core-core repulsion = 22843.143041 eV Total energy + Delta-G solvation = -4052.895174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.88076 -41.35872 -40.50327 -38.98115 -37.95098 -36.03077 -35.05760 -34.25840 -32.57388 -32.06803 -31.89800 -29.59164 -27.09139 -25.97223 -23.84825 -23.28781 -23.22335 -22.79877 -22.24893 -21.51545 -21.13712 -19.49134 -19.22143 -18.40850 -17.70615 -17.41492 -16.97017 -16.24867 -16.23869 -16.16923 -16.00392 -15.65295 -15.56652 -15.21130 -15.10706 -14.90783 -14.74938 -14.55578 -13.65668 -13.59028 -13.57220 -13.43356 -13.30996 -12.93101 -12.84263 -12.51851 -12.34213 -12.19598 -12.01793 -11.90742 -11.48225 -11.20233 -11.04449 -10.88715 -10.78344 -10.24822 -10.12032 -10.09954 -9.75066 -8.53800 -8.46695 -6.24046 -0.66411 0.26980 1.17752 1.38329 1.41139 1.60212 1.75230 1.92829 2.00029 2.00469 2.24153 2.48561 2.84608 2.89373 3.03741 3.10301 3.45988 3.65817 3.79441 3.84426 3.86487 4.07524 4.09445 4.20542 4.26990 4.44798 4.52418 4.64007 4.77816 4.80856 4.87731 5.00340 5.04473 5.05754 5.06532 5.18366 5.24039 5.27021 5.31179 5.41684 5.45133 5.66145 5.96333 6.30203 6.40584 6.68036 6.73617 7.07640 7.30617 7.46924 7.67682 8.52864 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.001740 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.888626 B =16089.683494 C =16958.062194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.238 1.238 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.144 0.856 9 N -0.168 5.168 10 C -0.074 4.074 11 C -0.049 4.049 12 N -0.602 5.602 13 C 0.534 3.466 14 O -0.574 6.574 15 C -0.105 4.105 16 C -0.080 4.080 17 C -0.072 4.072 18 C -0.121 4.121 19 C 0.562 3.438 20 O -0.575 6.575 21 N -0.681 5.681 22 C 0.048 3.952 23 C -0.184 4.184 24 C -0.171 4.171 25 C -0.073 4.073 26 C -0.085 4.085 27 C -0.059 4.059 28 N -0.312 5.312 29 H 0.276 0.724 30 H 0.194 0.806 31 H 0.421 0.579 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.418 0.582 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.601 -26.022 0.040 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.161 1.161 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.161 0.839 9 N 0.064 4.936 10 C -0.225 4.225 11 C -0.155 4.155 12 N -0.247 5.247 13 C 0.323 3.677 14 O -0.454 6.454 15 C -0.108 4.108 16 C -0.099 4.099 17 C -0.090 4.090 18 C -0.125 4.125 19 C 0.351 3.649 20 O -0.455 6.455 21 N -0.332 5.332 22 C -0.057 4.057 23 C -0.222 4.222 24 C -0.209 4.209 25 C -0.091 4.091 26 C -0.103 4.103 27 C -0.234 4.234 28 N -0.144 5.144 29 H 0.086 0.914 30 H 0.210 0.790 31 H 0.260 0.740 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.257 0.743 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.505 -24.852 0.044 27.386 hybrid contribution 0.397 0.117 0.012 0.415 sum 11.903 -24.735 0.057 27.450 Atomic orbital electron populations 1.70415 1.08500 1.29024 1.37408 1.26901 0.96453 1.04426 0.94156 0.84531 0.79165 0.74381 0.78093 1.16084 1.19917 1.19929 1.20694 0.93043 0.80793 1.53809 0.83851 1.44865 1.03586 1.04927 1.40244 1.22031 0.98883 0.83979 1.17604 1.17312 0.92915 0.83462 1.21811 1.42248 1.09580 1.02454 1.70456 1.18791 0.83870 0.87537 0.77480 1.90668 1.27504 1.75608 1.51656 1.20011 0.96081 0.90696 1.04019 1.21224 0.98902 0.92990 0.96790 1.21214 0.97824 0.93755 0.96251 1.20097 0.95088 0.92354 1.04919 1.18410 0.83377 0.87708 0.75428 1.90759 1.38884 1.64403 1.51459 1.45147 1.07834 1.06770 1.73415 1.21679 0.96071 0.80619 1.07343 1.23518 1.01634 1.03429 0.93629 1.23487 0.97519 1.03579 0.96321 1.21538 0.98776 0.92552 0.96247 1.21582 0.96075 0.95808 0.96841 1.24176 0.99106 0.90992 1.09116 1.78166 0.92165 1.16532 1.27492 0.91444 0.78955 0.74002 0.85147 0.84308 0.74316 0.86424 0.87357 0.87441 0.87024 0.86843 0.80585 0.81561 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.60 11.81 21.66 0.26 -47.35 16 2 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 3 Si 1.02 38.03 29.55 68.60 2.03 40.06 16 4 H -0.24 -7.84 7.11 99.48 0.71 -7.13 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.35 -18.28 10.25 84.02 0.86 -17.42 16 8 H 0.14 6.36 7.83 -2.91 -0.02 6.33 16 9 N -0.17 -9.14 3.74 -190.00 -0.71 -9.85 16 10 C -0.07 -3.31 11.49 83.39 0.96 -2.35 16 11 C -0.05 -2.18 6.90 37.76 0.26 -1.92 16 12 N -0.60 -19.71 5.41 -306.38 -1.66 -21.36 16 13 C 0.53 18.44 7.75 86.83 0.67 19.12 16 14 O -0.57 -25.50 13.48 -3.91 -0.05 -25.56 16 15 C -0.10 -2.58 5.88 -20.04 -0.12 -2.70 16 16 C -0.08 -2.00 9.58 22.49 0.22 -1.78 16 17 C -0.07 -1.55 9.58 22.49 0.22 -1.34 16 18 C -0.12 -2.13 5.88 -20.04 -0.12 -2.24 16 19 C 0.56 10.67 7.78 86.84 0.68 11.35 16 20 O -0.57 -15.77 15.90 -3.81 -0.06 -15.83 16 21 N -0.68 -7.67 5.52 -445.24 -2.46 -10.12 16 22 C 0.05 0.54 6.43 44.99 0.29 0.83 16 23 C -0.18 -1.20 10.46 30.59 0.32 -0.88 16 24 C -0.17 -0.94 10.45 30.59 0.32 -0.62 16 25 C -0.07 -0.82 9.53 22.49 0.21 -0.61 16 26 C -0.08 -1.26 9.53 22.49 0.21 -1.05 16 27 C -0.06 -3.20 10.85 85.43 0.93 -2.27 16 28 N -0.31 -18.77 10.39 -56.45 -0.59 -19.36 16 29 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 30 H 0.19 6.44 8.06 -2.91 -0.02 6.42 16 31 H 0.42 9.17 6.85 -92.71 -0.63 8.53 16 32 H 0.13 3.57 7.64 -2.91 -0.02 3.55 16 33 H 0.14 3.04 7.64 -2.91 -0.02 3.02 16 34 H 0.42 1.76 6.85 -92.70 -0.63 1.13 16 35 H 0.12 1.84 7.40 -2.39 -0.02 1.82 16 36 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.18 0.31 6.39 -2.91 -0.02 0.29 16 41 H 0.17 1.39 6.39 -2.91 -0.02 1.37 16 42 H 0.17 9.15 5.92 -2.91 -0.02 9.14 16 Total: -1.00 -84.81 366.77 2.97 -81.83 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.16 Total: 31.35 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.37 Total: -3.81 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -5.16 Total: -108.05 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.11 Total: -41.39 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -84.81 2.97 -81.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756959563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.991 kcal (2) G-P(sol) polarization free energy of solvation -84.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds