Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38305 * 120.08239 * 2 1 4 4 C 1.37827 * 120.22920 * 179.97438 * 3 2 1 5 5 C 1.39683 * 120.27795 * 359.97438 * 4 3 2 6 6 C 1.38613 * 119.03170 * 0.02562 * 5 4 3 7 7 C 1.38157 * 120.47042 * 0.02562 * 6 5 4 8 8 C 1.51225 * 108.53952 * 180.02562 * 6 5 4 9 9 C 1.53747 * 104.54808 * 359.97438 * 8 6 5 10 10 N 1.39640 * 129.33016 * 180.02562 * 5 4 3 11 11 C 1.34777 * 124.95858 * 0.03111 * 10 5 4 12 12 O 1.21393 * 119.99852 * 359.97438 * 11 10 5 13 13 C 1.49212 * 119.99667 * 179.97438 * 11 10 5 14 14 O 1.21413 * 120.00636 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99667 * 179.97438 * 13 11 10 16 16 C 1.40305 * 120.00171 * 180.02562 * 15 13 11 17 17 C 1.40725 * 126.09482 * 359.68241 * 16 15 13 18 18 N 1.30874 * 108.37346 * 179.85349 * 17 16 15 19 19 N 1.40067 * 108.43536 * 0.41239 * 18 17 16 20 20 C 1.37295 * 126.05251 * 179.71270 * 19 18 17 21 21 H 1.08003 * 119.99438 * 180.02562 * 20 19 18 22 22 C 1.39007 * 120.00378 * 0.02736 * 20 19 18 23 23 N 1.31283 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47182 * 59.99707 * 24 22 20 26 26 H 1.48500 * 109.47030 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46999 * 299.99672 * 24 22 20 28 28 C 1.35776 * 126.10216 * 180.02562 * 16 15 13 29 29 H 1.08998 * 109.47255 * 89.99415 * 1 2 3 30 30 H 1.09000 * 109.47182 * 209.99934 * 1 2 3 31 31 H 1.09008 * 109.46659 * 329.99391 * 1 2 3 32 32 H 1.07999 * 119.88569 * 359.95651 * 3 2 1 33 33 H 1.08003 * 119.85749 * 179.97438 * 4 3 2 34 34 H 1.08008 * 119.92319 * 179.97438 * 7 6 5 35 35 H 1.09005 * 110.41548 * 241.23564 * 8 6 5 36 36 H 1.08997 * 110.41808 * 118.77137 * 8 6 5 37 37 H 1.09000 * 110.29444 * 118.93158 * 9 8 6 38 38 H 1.09002 * 110.29750 * 241.07001 * 9 8 6 39 39 H 0.97002 * 120.00123 * 0.02562 * 15 13 11 40 40 H 1.07997 * 125.81413 * 0.02911 * 17 16 15 41 41 H 0.96996 * 120.00196 * 180.02562 * 23 22 20 42 42 H 1.08005 * 126.25490 * 359.95625 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1968 0.0000 4 6 3.5785 1.2003 0.0005 5 6 4.2859 -0.0042 0.0016 6 6 3.5815 -1.1980 0.0016 7 6 2.1999 -1.1962 0.0000 8 6 4.5719 -2.3407 0.0035 9 6 5.9494 -1.6579 0.0040 10 7 5.6655 -0.2204 0.0028 11 6 6.5994 0.7514 0.0037 12 8 6.2620 1.9175 0.0030 13 6 8.0480 0.3937 0.0055 14 8 8.3855 -0.7725 0.0056 15 7 8.9820 1.3655 0.0058 16 6 10.3441 1.0293 0.0070 17 6 10.8766 -0.2733 0.0141 18 7 12.1824 -0.1852 0.0097 19 7 12.5349 1.1704 0.0091 20 6 13.8125 1.6730 0.0106 21 1 13.9725 2.7411 0.0104 22 6 14.9001 0.8072 0.0122 23 7 14.7055 -0.4911 0.0129 24 14 16.6384 1.4912 0.0134 25 1 16.8415 2.3247 1.2254 26 1 17.6116 0.3696 0.0158 27 1 16.8439 2.3230 -1.1995 28 6 11.3837 1.9027 0.0079 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6597 2.1318 -0.0007 33 1 4.1138 2.1383 0.0001 34 1 1.6599 -2.1316 -0.0004 35 1 4.4505 -2.9506 -0.8917 36 1 4.4484 -2.9495 0.8992 37 1 6.5071 -1.9322 0.8995 38 1 6.5086 -1.9339 -0.8900 39 1 8.7124 2.2973 0.0053 40 1 10.3050 -1.1896 0.0192 41 1 15.4644 -1.0952 0.0144 42 1 11.3125 2.9804 0.0073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765773976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 56.368967 kcal Electronic energy + Delta-G solvation = -27942.566742 eV Core-core repulsion = 23889.984307 eV Total energy + Delta-G solvation = -4052.582435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48066 -40.08642 -39.20206 -37.92965 -36.98056 -34.45267 -33.26695 -32.50933 -31.98842 -30.37501 -29.28010 -28.20687 -27.21008 -25.42864 -24.35461 -23.11577 -22.56475 -21.17260 -20.78818 -19.86275 -19.50221 -17.76490 -17.58633 -16.94274 -16.58035 -15.93741 -15.53626 -15.33093 -15.16310 -14.99823 -14.75467 -14.28666 -13.94124 -13.89520 -13.85942 -13.62731 -13.14382 -13.06836 -12.93889 -12.70217 -12.32416 -12.25811 -12.09667 -11.88703 -11.76000 -11.53617 -11.30502 -11.30240 -11.07083 -10.79872 -10.60688 -10.38409 -10.15782 -9.27103 -9.19521 -8.98509 -8.92857 -8.18119 -7.89118 -6.83973 -6.64318 -4.32031 0.87219 1.19158 1.72522 2.26740 2.90739 3.01114 3.05097 3.18815 3.47657 3.55378 3.67104 3.78746 4.24946 4.30660 4.37128 4.47843 4.71863 4.80463 4.91205 4.94306 4.97493 4.97797 5.03503 5.22690 5.34672 5.47747 5.54965 5.63124 5.72635 5.76489 5.81958 6.01757 6.14551 6.19299 6.26523 6.29717 6.41152 6.69074 6.79110 6.83710 6.88195 7.04147 7.11533 7.53557 7.76177 7.98751 8.12058 8.38988 8.63131 9.26143 9.54593 10.31324 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.002021 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.502805 B =13851.549679 C =14525.180349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.096 4.096 4 C -0.125 4.125 5 C 0.139 3.861 6 C -0.128 4.128 7 C -0.081 4.081 8 C -0.091 4.091 9 C 0.110 3.890 10 N -0.530 5.530 11 C 0.522 3.478 12 O -0.508 6.508 13 C 0.487 3.513 14 O -0.515 6.515 15 N -0.579 5.579 16 C -0.071 4.071 17 C -0.025 4.025 18 N -0.260 5.260 19 N -0.137 5.137 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.937 3.063 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.077 4.077 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.410 0.590 40 H 0.178 0.822 41 H 0.277 0.723 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.153 -0.561 -0.025 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.146 4.146 5 C 0.044 3.956 6 C -0.131 4.131 7 C -0.100 4.100 8 C -0.128 4.128 9 C -0.012 4.012 10 N -0.253 5.253 11 C 0.307 3.693 12 O -0.382 6.382 13 C 0.268 3.732 14 O -0.393 6.393 15 N -0.221 5.221 16 C -0.177 4.177 17 C -0.200 4.200 18 N -0.091 5.091 19 N 0.097 4.903 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.228 4.228 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.245 0.755 40 H 0.195 0.805 41 H 0.088 0.912 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.661 -1.587 -0.026 20.722 hybrid contribution -0.098 1.345 -0.005 1.348 sum -20.759 -0.243 -0.031 20.760 Atomic orbital electron populations 1.20710 0.90945 1.02644 1.02169 1.19783 0.96053 0.92824 1.02441 1.20800 0.93060 0.97775 0.99836 1.20984 0.93867 0.97042 1.02704 1.18398 0.82431 0.95022 0.99708 1.20059 0.93810 0.93957 1.05230 1.20204 0.91484 0.97873 1.00439 1.21253 0.91280 0.96292 1.03981 1.22348 0.96871 0.76574 1.05376 1.45544 1.03571 1.08542 1.67670 1.20373 0.87241 0.84557 0.77103 1.90704 1.82323 1.18195 1.46987 1.19244 0.85363 0.86299 0.82304 1.90655 1.80875 1.18167 1.49590 1.42100 1.03931 1.09181 1.66931 1.17229 0.80752 0.94306 1.25384 1.24143 0.92281 0.96366 1.07253 1.78273 1.10907 0.94108 1.25826 1.44568 1.03938 1.03539 1.38277 1.19896 0.78487 0.93753 1.53265 0.86431 1.25673 1.01068 0.95064 0.95330 1.70192 1.32554 1.01959 1.34582 0.85861 0.79694 0.78860 0.79579 1.19071 1.20057 1.19065 1.21296 0.85768 0.96398 1.19365 0.91362 0.91675 0.91618 0.85522 0.84199 0.85731 0.88976 0.88968 0.88621 0.88613 0.75546 0.80522 0.91244 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.02 36.01 0.36 -0.30 16 2 C -0.11 -1.00 5.88 -104.60 -0.62 -1.61 16 3 C -0.10 -0.97 9.68 -39.71 -0.38 -1.36 16 4 C -0.13 -1.59 9.45 -39.19 -0.37 -1.96 16 5 C 0.14 1.85 6.62 -83.62 -0.55 1.30 16 6 C -0.13 -1.39 6.23 -104.26 -0.65 -2.04 16 7 C -0.08 -0.76 9.70 -39.61 -0.38 -1.14 16 8 C -0.09 -0.82 6.94 -27.24 -0.19 -1.01 16 9 C 0.11 1.30 5.66 -3.64 -0.02 1.28 16 10 N -0.53 -7.57 3.12 -113.48 -0.35 -7.92 16 11 C 0.52 8.45 7.85 -11.70 -0.09 8.36 16 12 O -0.51 -8.60 14.63 5.46 0.08 -8.52 16 13 C 0.49 8.80 7.81 -11.70 -0.09 8.71 16 14 O -0.52 -10.00 11.19 5.44 0.06 -9.93 16 15 N -0.58 -10.81 5.45 -10.48 -0.06 -10.86 16 16 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 17 C -0.02 -0.63 10.85 -17.02 -0.18 -0.81 16 18 N -0.26 -7.35 10.39 30.81 0.32 -7.03 16 19 N -0.14 -3.67 3.73 -11.40 -0.04 -3.71 16 20 C -0.32 -8.31 10.25 -14.82 -0.15 -8.47 16 21 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -20.88 11.81 55.50 0.66 -20.23 16 24 Si 0.94 18.48 29.55 -169.99 -5.02 13.46 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 28 C -0.08 -1.78 11.50 -16.38 -0.19 -1.97 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.91 6.27 -52.48 -0.33 1.58 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.16 7.62 -51.93 -0.40 0.76 16 38 H 0.10 1.16 7.63 -51.93 -0.40 0.76 16 39 H 0.41 6.59 8.29 -40.82 -0.34 6.25 16 40 H 0.18 4.30 5.92 -52.49 -0.31 3.99 16 41 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -32.04 358.67 -7.84 -39.88 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.69 Total: 11.60 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.19 Total: -2.13 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.52 Total: -49.76 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.14 Total: -18.45 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.04 -7.84 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765773976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.250 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds