Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38305 * 120.08239 * 2 1 4 4 C 1.37827 * 120.22920 * 179.97438 * 3 2 1 5 5 C 1.39683 * 120.27795 * 359.97438 * 4 3 2 6 6 C 1.38613 * 119.03170 * 0.02562 * 5 4 3 7 7 C 1.38157 * 120.47042 * 0.02562 * 6 5 4 8 8 C 1.51225 * 108.53952 * 180.02562 * 6 5 4 9 9 C 1.53747 * 104.54808 * 359.97438 * 8 6 5 10 10 N 1.39640 * 129.33016 * 180.02562 * 5 4 3 11 11 C 1.34777 * 124.95858 * 0.03111 * 10 5 4 12 12 O 1.21393 * 119.99852 * 359.97438 * 11 10 5 13 13 C 1.49212 * 119.99667 * 179.97438 * 11 10 5 14 14 O 1.21413 * 120.00636 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99667 * 179.97438 * 13 11 10 16 16 C 1.40305 * 120.00171 * 180.02562 * 15 13 11 17 17 C 1.40725 * 126.09482 * 359.68241 * 16 15 13 18 18 N 1.30874 * 108.37346 * 179.85349 * 17 16 15 19 19 N 1.40067 * 108.43536 * 0.41239 * 18 17 16 20 20 C 1.37295 * 126.05251 * 179.71270 * 19 18 17 21 21 H 1.08003 * 119.99438 * 180.02562 * 20 19 18 22 22 C 1.39007 * 120.00378 * 0.02736 * 20 19 18 23 23 N 1.31283 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47182 * 59.99707 * 24 22 20 26 26 H 1.48500 * 109.47030 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46999 * 299.99672 * 24 22 20 28 28 C 1.35776 * 126.10216 * 180.02562 * 16 15 13 29 29 H 1.08998 * 109.47255 * 89.99415 * 1 2 3 30 30 H 1.09000 * 109.47182 * 209.99934 * 1 2 3 31 31 H 1.09008 * 109.46659 * 329.99391 * 1 2 3 32 32 H 1.07999 * 119.88569 * 359.95651 * 3 2 1 33 33 H 1.08003 * 119.85749 * 179.97438 * 4 3 2 34 34 H 1.08008 * 119.92319 * 179.97438 * 7 6 5 35 35 H 1.09005 * 110.41548 * 241.23564 * 8 6 5 36 36 H 1.08997 * 110.41808 * 118.77137 * 8 6 5 37 37 H 1.09000 * 110.29444 * 118.93158 * 9 8 6 38 38 H 1.09002 * 110.29750 * 241.07001 * 9 8 6 39 39 H 0.97002 * 120.00123 * 0.02562 * 15 13 11 40 40 H 1.07997 * 125.81413 * 0.02911 * 17 16 15 41 41 H 0.96996 * 120.00196 * 180.02562 * 23 22 20 42 42 H 1.08005 * 126.25490 * 359.95625 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1968 0.0000 4 6 3.5785 1.2003 0.0005 5 6 4.2859 -0.0042 0.0016 6 6 3.5815 -1.1980 0.0016 7 6 2.1999 -1.1962 0.0000 8 6 4.5719 -2.3407 0.0035 9 6 5.9494 -1.6579 0.0040 10 7 5.6655 -0.2204 0.0028 11 6 6.5994 0.7514 0.0037 12 8 6.2620 1.9175 0.0030 13 6 8.0480 0.3937 0.0055 14 8 8.3855 -0.7725 0.0056 15 7 8.9820 1.3655 0.0058 16 6 10.3441 1.0293 0.0070 17 6 10.8766 -0.2733 0.0141 18 7 12.1824 -0.1852 0.0097 19 7 12.5349 1.1704 0.0091 20 6 13.8125 1.6730 0.0106 21 1 13.9725 2.7411 0.0104 22 6 14.9001 0.8072 0.0122 23 7 14.7055 -0.4911 0.0129 24 14 16.6384 1.4912 0.0134 25 1 16.8415 2.3247 1.2254 26 1 17.6116 0.3696 0.0158 27 1 16.8439 2.3230 -1.1995 28 6 11.3837 1.9027 0.0079 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6597 2.1318 -0.0007 33 1 4.1138 2.1383 0.0001 34 1 1.6599 -2.1316 -0.0004 35 1 4.4505 -2.9506 -0.8917 36 1 4.4484 -2.9495 0.8992 37 1 6.5071 -1.9322 0.8995 38 1 6.5086 -1.9339 -0.8900 39 1 8.7124 2.2973 0.0053 40 1 10.3050 -1.1896 0.0192 41 1 15.4644 -1.0952 0.0144 42 1 11.3125 2.9804 0.0073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765773976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = 36.795115 kcal Electronic energy + Delta-G solvation = -27943.415528 eV Core-core repulsion = 23889.984307 eV Total energy + Delta-G solvation = -4053.431221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.60892 -41.71687 -40.59698 -39.31664 -37.92816 -36.10416 -35.05498 -33.43774 -32.78004 -32.31570 -30.14480 -29.94182 -28.17771 -27.03844 -25.69016 -24.05990 -23.64224 -22.92107 -21.78820 -21.38416 -21.01183 -19.44055 -18.88747 -18.22257 -17.71390 -17.46527 -16.94929 -16.88808 -16.24808 -16.04244 -15.97008 -15.54961 -15.39905 -15.31587 -14.90687 -14.78187 -14.58170 -14.45760 -13.78355 -13.52395 -13.49307 -13.34354 -13.09081 -13.00178 -12.98514 -12.89596 -12.86509 -12.70402 -12.25352 -12.13920 -12.01385 -11.79568 -11.10695 -11.03755 -10.89989 -10.61992 -10.16371 -9.77672 -8.82932 -8.64412 -8.50395 -6.28463 -0.22745 0.38499 0.59009 1.01461 1.28782 1.40429 1.56365 1.69011 1.93850 2.07214 2.27676 2.45516 2.75408 2.75885 3.06032 3.28006 3.48152 3.55679 4.01619 4.05094 4.15118 4.21899 4.28440 4.36914 4.48703 4.51189 4.67934 4.77826 4.89881 4.91688 4.93734 4.95633 4.97306 5.04624 5.08405 5.17531 5.26494 5.31527 5.38805 5.40715 5.66729 5.88104 5.94059 5.99221 6.14508 6.30282 6.53826 6.66886 6.95424 7.38404 7.60123 8.48508 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.002021 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.502805 B =13851.549679 C =14525.180349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.142 4.142 5 C 0.097 3.903 6 C -0.124 4.124 7 C -0.083 4.083 8 C -0.081 4.081 9 C 0.102 3.898 10 N -0.527 5.527 11 C 0.523 3.477 12 O -0.522 6.522 13 C 0.492 3.508 14 O -0.528 6.528 15 N -0.579 5.579 16 C -0.058 4.058 17 C -0.044 4.044 18 N -0.307 5.307 19 N -0.162 5.162 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.004 4.004 23 N -0.819 5.819 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.276 1.276 27 H -0.254 1.254 28 C -0.074 4.074 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.423 0.577 40 H 0.178 0.822 41 H 0.279 0.721 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.551 -0.175 -0.023 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.163 4.163 5 C 0.003 3.997 6 C -0.127 4.127 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.019 4.019 10 N -0.250 5.250 11 C 0.307 3.693 12 O -0.398 6.398 13 C 0.273 3.727 14 O -0.405 6.405 15 N -0.223 5.223 16 C -0.164 4.164 17 C -0.220 4.220 18 N -0.138 5.138 19 N 0.070 4.930 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.447 5.447 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.178 1.178 28 C -0.225 4.225 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.260 0.740 40 H 0.195 0.805 41 H 0.088 0.912 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.131 -1.200 -0.025 23.162 hybrid contribution 0.312 1.191 -0.007 1.231 sum -22.818 -0.009 -0.032 22.818 Atomic orbital electron populations 1.20791 0.88433 1.03916 1.03239 1.20228 0.97834 0.92232 0.99934 1.21067 0.92091 0.99431 0.99516 1.21026 0.95087 0.96299 1.03865 1.18693 0.81826 0.96398 1.02765 1.20361 0.94696 0.93457 1.04190 1.20610 0.90827 0.99356 0.99291 1.21292 0.88546 0.95775 1.06143 1.22499 0.98945 0.75756 1.04721 1.45581 1.04009 1.08906 1.66483 1.19843 0.86488 0.84899 0.78046 1.90697 1.82195 1.18607 1.48304 1.19688 0.86313 0.85894 0.80761 1.90643 1.81504 1.18886 1.49513 1.42011 1.02468 1.10179 1.67689 1.17258 0.82507 0.93230 1.23408 1.24264 0.91997 0.97596 1.08133 1.78167 1.12288 0.95908 1.27476 1.44839 1.05139 1.03335 1.39642 1.20627 0.78703 0.95166 1.54001 0.84121 1.26880 1.05711 0.95083 0.93991 1.70361 1.33989 1.03755 1.36580 0.84645 0.73221 0.78073 0.80255 1.17794 1.20120 1.17786 1.21979 0.84887 0.98127 1.17547 0.90226 0.90129 0.90740 0.83616 0.86128 0.82596 0.86744 0.86732 0.89282 0.89275 0.73964 0.80501 0.91166 0.79569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.02 71.24 0.71 -0.17 16 2 C -0.10 -1.53 5.88 -19.85 -0.12 -1.64 16 3 C -0.10 -1.91 9.68 22.19 0.21 -1.70 16 4 C -0.14 -3.60 9.45 22.52 0.21 -3.39 16 5 C 0.10 2.53 6.62 38.34 0.25 2.78 16 6 C -0.12 -2.45 6.23 -19.63 -0.12 -2.58 16 7 C -0.08 -1.25 9.70 22.25 0.22 -1.04 16 8 C -0.08 -1.28 6.94 30.27 0.21 -1.07 16 9 C 0.10 2.39 5.66 86.63 0.49 2.88 16 10 N -0.53 -15.15 3.12 -631.29 -1.97 -17.13 16 11 C 0.52 17.29 7.85 87.20 0.68 17.98 16 12 O -0.52 -18.08 14.63 -3.38 -0.05 -18.13 16 13 C 0.49 18.12 7.81 87.20 0.68 18.80 16 14 O -0.53 -21.05 11.19 -3.44 -0.04 -21.09 16 15 N -0.58 -21.77 5.45 -305.41 -1.66 -23.43 16 16 C -0.06 -2.66 6.90 37.82 0.26 -2.40 16 17 C -0.04 -2.34 10.85 85.44 0.93 -1.41 16 18 N -0.31 -18.05 10.39 -56.44 -0.59 -18.63 16 19 N -0.16 -8.87 3.73 -189.98 -0.71 -9.58 16 20 C -0.35 -18.48 10.25 84.02 0.86 -17.62 16 21 H 0.14 6.37 7.83 -2.91 -0.02 6.34 16 22 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 23 N -0.82 -46.28 11.81 21.66 0.26 -46.02 16 24 Si 1.02 37.89 29.55 68.60 2.03 39.92 16 25 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 26 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 28 C -0.07 -3.45 11.50 83.40 0.96 -2.49 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 31 H 0.07 0.52 8.09 -2.38 -0.02 0.50 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.12 3.44 6.27 -2.91 -0.02 3.42 16 34 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 2.18 7.62 -2.39 -0.02 2.16 16 38 H 0.09 2.18 7.63 -2.39 -0.02 2.17 16 39 H 0.42 13.52 8.29 -92.71 -0.77 12.75 16 40 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 41 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -73.21 358.67 4.50 -68.71 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.32 Total: 38.21 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 6.91 Total: 7.18 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.68 Total: -114.79 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.09 Total: -39.22 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -73.21 4.50 -68.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765773976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.505 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds