Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48499 * 109.47128 * 270.00313 * 3 2 1 5 5 H 1.48504 * 109.47043 * 30.00399 * 3 2 1 6 6 H 1.48507 * 109.47192 * 150.00231 * 3 2 1 7 7 C 1.38810 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00483 * 163.06581 * 7 2 1 9 9 N 1.36939 * 119.99821 * 343.05723 * 7 2 1 10 10 C 1.46928 * 120.63169 * 331.85078 * 9 7 2 11 11 C 1.53198 * 108.77186 * 233.62639 * 10 9 7 12 12 C 1.53044 * 109.31064 * 305.36044 * 11 10 9 13 13 O 1.45201 * 109.45981 * 181.38711 * 12 11 10 14 14 C 1.34229 * 117.00151 * 149.97604 * 13 12 11 15 15 O 1.20826 * 119.99553 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00011 * 180.02562 * 14 13 12 17 17 C 1.53798 * 111.96414 * 58.66842 * 16 14 13 18 18 C 1.56457 * 100.32860 * 92.86244 * 17 16 14 19 19 C 1.51287 * 104.69813 * 24.89028 * 18 17 16 20 20 O 1.21278 * 124.80641 * 168.16381 * 19 18 17 21 21 N 1.34780 * 110.38923 * 348.16633 * 19 18 17 22 22 C 1.47956 * 141.23185 * 167.93422 * 21 19 18 23 23 C 1.55852 * 105.90361 * 238.31626 * 22 21 19 24 24 S 1.82947 * 111.97920 * 293.98281 * 16 14 13 25 25 C 1.53041 * 109.52606 * 61.37512 * 12 11 10 26 26 C 1.46931 * 120.62968 * 151.86140 * 9 7 2 27 27 H 0.97000 * 120.00462 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.59166 * 113.83966 * 10 9 7 29 29 H 1.08993 * 109.70279 * 353.47659 * 10 9 7 30 30 H 1.09000 * 109.49829 * 185.41291 * 11 10 9 31 31 H 1.08996 * 109.52443 * 65.32602 * 11 10 9 32 32 H 1.08999 * 109.45948 * 301.36152 * 12 11 10 33 33 H 1.08999 * 111.10072 * 210.24985 * 17 16 14 34 34 H 1.09000 * 111.10511 * 334.36648 * 17 16 14 35 35 H 1.09000 * 109.71112 * 266.33234 * 18 17 16 36 36 H 1.09002 * 110.82962 * 144.00604 * 18 17 16 37 37 H 1.09001 * 110.13339 * 119.23044 * 22 21 19 38 38 H 1.09000 * 110.20679 * 357.44614 * 22 21 19 39 39 H 1.08995 * 111.16589 * 198.99291 * 23 22 21 40 40 H 1.08999 * 111.16850 * 74.76099 * 23 22 21 41 41 H 1.09005 * 109.50177 * 58.57524 * 25 12 11 42 42 H 1.09005 * 109.49837 * 178.67401 * 25 12 11 43 43 H 1.08995 * 109.58764 * 246.15884 * 26 9 7 44 44 H 1.09001 * 109.58656 * 6.44590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2730 9 7 1.3702 -2.3624 0.3445 10 6 0.2264 -2.3408 1.2665 11 6 0.4985 -3.3199 2.4128 12 6 0.8136 -4.7014 1.8344 13 8 1.0399 -5.6398 2.9191 14 6 0.7209 -6.9235 2.6908 15 8 0.2672 -7.2521 1.6202 16 6 0.9277 -7.9547 3.7702 17 6 0.1415 -7.6157 5.0478 18 6 -1.1786 -8.4132 4.7848 19 6 -0.7750 -9.5222 3.8382 20 8 -1.4674 -10.4768 3.5550 21 7 0.4630 -9.2992 3.3543 22 6 1.5469 -9.9715 2.6046 23 6 2.7996 -9.9245 3.5306 24 16 2.6997 -8.1970 4.1553 25 6 2.0689 -4.6170 0.9631 26 6 1.8144 -3.6528 -0.1999 27 1 -0.4851 0.8400 0.0004 28 1 -0.6767 -2.6418 0.7355 29 1 0.0967 -1.3357 1.6675 30 1 -0.3818 -3.3854 3.0521 31 1 1.3480 -2.9683 2.9983 32 1 -0.0265 -5.0418 1.2290 33 1 0.6531 -7.9902 5.9344 34 1 -0.0392 -6.5435 5.1246 35 1 -1.9150 -7.7607 4.3156 36 1 -1.5721 -8.8284 5.7127 37 1 1.7467 -9.4384 1.6750 38 1 1.2739 -11.0056 2.3941 39 1 3.7156 -10.0851 2.9621 40 1 2.7139 -10.6433 4.3455 41 1 2.9037 -4.2527 1.5619 42 1 2.3064 -5.6057 0.5704 43 1 1.0408 -4.0608 -0.8504 44 1 2.7336 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770782773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -71.235603 kcal Electronic energy + Delta-G solvation = -28399.872710 eV Core-core repulsion = 24444.908126 eV Total energy + Delta-G solvation = -3954.964584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45805 -39.95012 -37.76612 -36.94939 -35.93389 -34.33657 -32.75228 -30.49824 -29.99491 -29.76691 -28.77718 -25.33896 -24.39665 -23.68065 -22.44443 -22.21830 -21.17761 -19.79968 -19.34331 -18.54990 -17.40973 -17.21329 -16.70973 -16.28357 -16.13181 -15.74164 -15.30412 -14.90414 -14.50249 -14.20364 -14.08414 -13.79244 -13.64872 -13.54723 -13.27471 -13.07938 -12.93050 -12.83359 -12.56851 -12.48565 -11.96293 -11.78364 -11.59029 -11.33149 -11.15330 -10.93097 -10.81805 -10.75393 -10.70137 -10.40786 -10.33819 -10.24607 -9.96887 -9.75407 -9.54159 -9.44009 -8.53533 -8.28934 -6.77395 -5.85872 -3.28521 0.75349 1.52741 1.89594 2.05360 2.32883 2.66773 3.34832 3.42068 3.44547 3.56116 3.75287 4.02700 4.29370 4.41503 4.44843 4.47031 4.72963 4.79283 4.95346 5.13900 5.17178 5.21945 5.29211 5.34950 5.36346 5.37367 5.46227 5.47195 5.64037 5.92818 6.16347 6.20099 6.35431 6.42807 6.51244 6.55629 6.67159 6.70670 6.88865 7.22351 7.51716 7.56427 7.69298 7.74529 8.37497 9.13517 9.76153 10.32506 11.23439 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.002791 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.554221 B =10028.903303 C =10393.390169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.135 4.135 12 C 0.099 3.901 13 O -0.342 6.342 14 C 0.473 3.527 15 O -0.488 6.488 16 C 0.160 3.840 17 C -0.106 4.106 18 C -0.150 4.150 19 C 0.552 3.448 20 O -0.511 6.511 21 N -0.605 5.605 22 C 0.118 3.882 23 C -0.097 4.097 24 S -0.203 6.203 25 C -0.145 4.145 26 C 0.149 3.851 27 H 0.255 0.745 28 H 0.022 0.978 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -18.846 12.133 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.174 4.174 12 C 0.046 3.954 13 O -0.258 6.258 14 C 0.310 3.690 15 O -0.375 6.375 16 C -0.039 4.039 17 C -0.145 4.145 18 C -0.191 4.191 19 C 0.341 3.659 20 O -0.385 6.385 21 N -0.342 5.342 22 C -0.003 4.003 23 C -0.247 4.247 24 S 0.026 5.974 25 C -0.184 4.184 26 C 0.022 3.978 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.113 -18.724 12.036 22.475 hybrid contribution -0.308 0.106 -0.785 0.850 sum 2.806 -18.617 11.251 21.933 Atomic orbital electron populations 1.70009 1.05301 1.25709 1.53706 1.25063 0.95309 0.98524 1.00610 0.86283 0.79197 0.83444 0.77768 1.21347 1.21490 1.20382 1.19180 0.92664 0.84630 1.42007 0.91505 1.44117 1.35774 1.01711 1.49852 1.20812 0.88931 0.97952 0.87496 1.22491 1.01353 0.92437 1.01146 1.23082 0.99213 0.87108 0.86005 1.86538 1.76454 1.16712 1.46056 1.22723 0.75029 0.83816 0.87476 1.90696 1.40584 1.80994 1.25191 1.23468 0.97225 0.86987 0.96222 1.23121 0.93607 1.03625 0.94179 1.22815 0.99139 0.96442 1.00717 1.20858 0.78478 0.86842 0.79772 1.90755 1.54140 1.32821 1.60761 1.49707 1.16488 1.12697 1.55331 1.22690 0.82986 1.00525 0.94123 1.25112 1.01670 0.95375 1.02524 1.88367 1.08998 1.17853 1.82189 1.22463 0.97084 1.00029 0.98856 1.20865 0.98260 0.86439 0.92231 0.93486 0.95988 0.88442 0.92316 0.91231 0.90297 0.86989 0.86855 0.86816 0.86130 0.88264 0.87190 0.85714 0.87690 0.91086 0.92705 0.96104 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.13 -2.50 5.74 -26.61 -0.15 -2.66 16 12 C 0.10 1.76 2.42 -26.69 -0.06 1.70 16 13 O -0.34 -5.32 9.64 -39.26 -0.38 -5.70 16 14 C 0.47 6.89 6.76 36.01 0.24 7.13 16 15 O -0.49 -8.44 15.40 -18.75 -0.29 -8.73 16 16 C 0.16 1.77 0.85 -67.73 -0.06 1.71 16 17 C -0.11 -0.85 6.43 -24.46 -0.16 -1.01 16 18 C -0.15 -1.22 6.87 -25.74 -0.18 -1.40 16 19 C 0.55 6.62 8.41 -10.70 -0.09 6.53 16 20 O -0.51 -7.88 18.03 5.56 0.10 -7.78 16 21 N -0.60 -6.73 2.92 -158.43 -0.46 -7.19 16 22 C 0.12 1.04 7.08 -1.72 -0.01 1.03 16 23 C -0.10 -0.65 7.63 38.68 0.30 -0.35 16 24 S -0.20 -2.01 22.18 -107.50 -2.38 -4.40 16 25 C -0.14 -2.62 5.72 -26.61 -0.15 -2.78 16 26 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 2.49 6.06 -51.93 -0.31 2.17 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.50 7.15 -51.93 -0.37 1.12 16 33 H 0.11 0.69 7.87 -51.93 -0.41 0.28 16 34 H 0.11 0.87 7.76 -51.93 -0.40 0.47 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.98 7.82 -51.93 -0.41 0.58 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -33.12 367.84 -9.91 -43.03 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.52 Total: -0.92 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.60 Total: 10.01 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.36 Total: -47.21 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.57 Total: -22.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.38 Total: -4.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.12 -9.91 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770782773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.206 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds