Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48499 * 109.47128 * 270.00313 * 3 2 1 5 5 H 1.48504 * 109.47043 * 30.00399 * 3 2 1 6 6 H 1.48507 * 109.47192 * 150.00231 * 3 2 1 7 7 C 1.38810 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00483 * 163.06581 * 7 2 1 9 9 N 1.36939 * 119.99821 * 343.05723 * 7 2 1 10 10 C 1.46928 * 120.63169 * 331.85078 * 9 7 2 11 11 C 1.53198 * 108.77186 * 233.62639 * 10 9 7 12 12 C 1.53044 * 109.31064 * 305.36044 * 11 10 9 13 13 O 1.45201 * 109.45981 * 181.38711 * 12 11 10 14 14 C 1.34229 * 117.00151 * 149.97604 * 13 12 11 15 15 O 1.20826 * 119.99553 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00011 * 180.02562 * 14 13 12 17 17 C 1.53798 * 111.96414 * 58.66842 * 16 14 13 18 18 C 1.56457 * 100.32860 * 92.86244 * 17 16 14 19 19 C 1.51287 * 104.69813 * 24.89028 * 18 17 16 20 20 O 1.21278 * 124.80641 * 168.16381 * 19 18 17 21 21 N 1.34780 * 110.38923 * 348.16633 * 19 18 17 22 22 C 1.47956 * 141.23185 * 167.93422 * 21 19 18 23 23 C 1.55852 * 105.90361 * 238.31626 * 22 21 19 24 24 S 1.82947 * 111.97920 * 293.98281 * 16 14 13 25 25 C 1.53041 * 109.52606 * 61.37512 * 12 11 10 26 26 C 1.46931 * 120.62968 * 151.86140 * 9 7 2 27 27 H 0.97000 * 120.00462 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.59166 * 113.83966 * 10 9 7 29 29 H 1.08993 * 109.70279 * 353.47659 * 10 9 7 30 30 H 1.09000 * 109.49829 * 185.41291 * 11 10 9 31 31 H 1.08996 * 109.52443 * 65.32602 * 11 10 9 32 32 H 1.08999 * 109.45948 * 301.36152 * 12 11 10 33 33 H 1.08999 * 111.10072 * 210.24985 * 17 16 14 34 34 H 1.09000 * 111.10511 * 334.36648 * 17 16 14 35 35 H 1.09000 * 109.71112 * 266.33234 * 18 17 16 36 36 H 1.09002 * 110.82962 * 144.00604 * 18 17 16 37 37 H 1.09001 * 110.13339 * 119.23044 * 22 21 19 38 38 H 1.09000 * 110.20679 * 357.44614 * 22 21 19 39 39 H 1.08995 * 111.16589 * 198.99291 * 23 22 21 40 40 H 1.08999 * 111.16850 * 74.76099 * 23 22 21 41 41 H 1.09005 * 109.50177 * 58.57524 * 25 12 11 42 42 H 1.09005 * 109.49837 * 178.67401 * 25 12 11 43 43 H 1.08995 * 109.58764 * 246.15884 * 26 9 7 44 44 H 1.09001 * 109.58656 * 6.44590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2730 9 7 1.3702 -2.3624 0.3445 10 6 0.2264 -2.3408 1.2665 11 6 0.4985 -3.3199 2.4128 12 6 0.8136 -4.7014 1.8344 13 8 1.0399 -5.6398 2.9191 14 6 0.7209 -6.9235 2.6908 15 8 0.2672 -7.2521 1.6202 16 6 0.9277 -7.9547 3.7702 17 6 0.1415 -7.6157 5.0478 18 6 -1.1786 -8.4132 4.7848 19 6 -0.7750 -9.5222 3.8382 20 8 -1.4674 -10.4768 3.5550 21 7 0.4630 -9.2992 3.3543 22 6 1.5469 -9.9715 2.6046 23 6 2.7996 -9.9245 3.5306 24 16 2.6997 -8.1970 4.1553 25 6 2.0689 -4.6170 0.9631 26 6 1.8144 -3.6528 -0.1999 27 1 -0.4851 0.8400 0.0004 28 1 -0.6767 -2.6418 0.7355 29 1 0.0967 -1.3357 1.6675 30 1 -0.3818 -3.3854 3.0521 31 1 1.3480 -2.9683 2.9983 32 1 -0.0265 -5.0418 1.2290 33 1 0.6531 -7.9902 5.9344 34 1 -0.0392 -6.5435 5.1246 35 1 -1.9150 -7.7607 4.3156 36 1 -1.5721 -8.8284 5.7127 37 1 1.7467 -9.4384 1.6750 38 1 1.2739 -11.0056 2.3941 39 1 3.7156 -10.0851 2.9621 40 1 2.7139 -10.6433 4.3455 41 1 2.9037 -4.2527 1.5619 42 1 2.3064 -5.6057 0.5704 43 1 1.0408 -4.0608 -0.8504 44 1 2.7336 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770782773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -90.861394 kcal Electronic energy + Delta-G solvation = -28400.723748 eV Core-core repulsion = 24444.908126 eV Total energy + Delta-G solvation = -3955.815622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46329 -41.08094 -39.19668 -38.09340 -37.32871 -35.05671 -34.56292 -32.20991 -31.51875 -30.67265 -29.75302 -27.12565 -25.19192 -24.71113 -23.96635 -23.65055 -22.37090 -21.10487 -20.61330 -19.56415 -18.90090 -18.37782 -18.04371 -17.31968 -16.94964 -16.90986 -16.66085 -16.22548 -15.79068 -15.42565 -15.27023 -15.01092 -14.91136 -14.75235 -14.52210 -14.31751 -14.20613 -14.03174 -13.58261 -13.31094 -13.21041 -13.07455 -12.78803 -12.63707 -12.60593 -12.53934 -12.49674 -12.15953 -12.00218 -11.91333 -11.78257 -11.55149 -11.46268 -11.23437 -11.10972 -10.56298 -10.38069 -9.03776 -8.75981 -7.90571 -5.36452 -0.09215 0.85852 0.91911 1.11847 1.36617 1.48852 1.50702 1.60515 1.65493 2.51188 2.79677 3.06068 3.22273 3.30648 3.39831 3.58515 3.63165 3.75814 3.81520 3.86588 4.11105 4.11786 4.17918 4.34568 4.38165 4.54605 4.56936 4.63038 4.69312 4.72546 4.77126 4.80376 4.84243 4.87907 4.93762 5.02854 5.19664 5.32733 5.42183 5.62254 5.67517 5.72515 6.36037 6.45813 6.69666 7.11271 7.79319 8.32102 9.17156 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.002791 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.554221 B =10028.903303 C =10393.390169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.120 4.120 12 C 0.108 3.892 13 O -0.335 6.335 14 C 0.472 3.528 15 O -0.520 6.520 16 C 0.160 3.840 17 C -0.099 4.099 18 C -0.144 4.144 19 C 0.542 3.458 20 O -0.555 6.555 21 N -0.609 5.609 22 C 0.107 3.893 23 C -0.078 4.078 24 S -0.220 6.220 25 C -0.131 4.131 26 C 0.147 3.853 27 H 0.252 0.748 28 H 0.000 1.000 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.012 0.988 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -19.866 14.099 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.159 4.159 12 C 0.053 3.947 13 O -0.250 6.250 14 C 0.310 3.690 15 O -0.409 6.409 16 C -0.040 4.040 17 C -0.137 4.137 18 C -0.184 4.184 19 C 0.333 3.667 20 O -0.432 6.432 21 N -0.345 5.345 22 C -0.013 4.013 23 C -0.227 4.227 24 S 0.009 5.991 25 C -0.170 4.170 26 C 0.021 3.979 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.639 -19.763 14.018 24.669 hybrid contribution -0.736 0.313 -1.483 1.685 sum 3.903 -19.450 12.535 23.466 Atomic orbital electron populations 1.70160 1.06681 1.26115 1.55031 1.25814 0.96052 1.01548 1.00814 0.85263 0.78177 0.79366 0.77528 1.21310 1.21698 1.19354 1.19511 0.92989 0.85730 1.41500 0.91311 1.44374 1.35954 1.02340 1.50670 1.20597 0.87903 0.97691 0.88400 1.22191 1.02510 0.91802 0.99405 1.22714 0.98414 0.87242 0.86289 1.86528 1.76576 1.17216 1.44682 1.23543 0.73733 0.83663 0.88047 1.90690 1.41994 1.81254 1.26916 1.23499 0.98755 0.85745 0.95964 1.23255 0.92977 1.04128 0.93382 1.22909 0.99292 0.95160 1.01057 1.21571 0.78260 0.87004 0.79861 1.90727 1.55192 1.34760 1.62495 1.49927 1.16736 1.12794 1.55068 1.22852 0.83575 1.00852 0.94068 1.25233 1.01369 0.93350 1.02711 1.88443 1.07814 1.20763 1.82091 1.22255 0.97302 0.99667 0.97786 1.20947 0.97957 0.85674 0.93336 0.93884 0.98219 0.91177 0.89926 0.91035 0.91756 0.84492 0.86225 0.86708 0.83123 0.89778 0.85945 0.83376 0.85624 0.90829 0.91456 0.97023 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 11.19 21.65 0.24 -53.87 16 2 C -0.05 -2.55 4.92 84.86 0.42 -2.14 16 3 Si 0.97 43.83 29.59 68.60 2.03 45.86 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.27 -14.47 9.58 84.03 0.81 -13.67 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -30.39 2.99 -699.09 -2.09 -32.48 16 10 C 0.18 8.48 5.30 86.36 0.46 8.94 16 11 C -0.12 -4.37 5.74 30.68 0.18 -4.19 16 12 C 0.11 3.73 2.42 30.62 0.07 3.81 16 13 O -0.33 -9.87 9.64 -51.41 -0.50 -10.37 16 14 C 0.47 13.16 6.76 71.24 0.48 13.64 16 15 O -0.52 -17.86 15.40 21.96 0.34 -17.53 16 16 C 0.16 3.20 0.85 44.19 0.04 3.23 16 17 C -0.10 -1.30 6.43 32.07 0.21 -1.09 16 18 C -0.14 -2.00 6.87 31.24 0.21 -1.79 16 19 C 0.54 12.39 8.41 87.84 0.74 13.13 16 20 O -0.55 -16.97 18.03 -3.02 -0.05 -17.02 16 21 N -0.61 -12.65 2.92 -773.55 -2.26 -14.91 16 22 C 0.11 1.72 7.08 87.09 0.62 2.34 16 23 C -0.08 -0.80 7.63 72.97 0.56 -0.24 16 24 S -0.22 -3.79 22.18 -56.49 -1.25 -5.04 16 25 C -0.13 -4.63 5.72 30.67 0.18 -4.45 16 26 C 0.15 6.19 6.52 86.36 0.56 6.75 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.07 3.68 6.06 -2.39 -0.01 3.67 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.45 7.15 -2.39 -0.02 2.43 16 33 H 0.14 1.15 7.87 -2.39 -0.02 1.13 16 34 H 0.12 1.47 7.76 -2.39 -0.02 1.45 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 42 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 Total: -1.00 -73.25 367.84 2.98 -70.27 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.01 Total: 10.83 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.52 Total: 24.26 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.11 Total: -101.26 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.21 Total: -44.92 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -1.25 Total: -5.04 kcal Total: -73.25 2.98 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770782773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.593 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds