Wall clock time and date at job start Sat Apr 11 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47448 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47513 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46969 * 120.00051 * 3 2 1 7 7 C 1.37873 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00307 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00053 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00162 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00076 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47013 * 180.02562 * 14 13 11 16 16 S 1.81394 * 109.46906 * 180.02562 * 15 14 13 17 17 O 1.42105 * 108.58026 * 65.51514 * 16 15 14 18 18 O 1.42097 * 108.58083 * 294.48551 * 16 15 14 19 19 C 1.81400 * 101.92110 * 180.02562 * 16 15 14 20 20 C 1.52995 * 109.47284 * 180.02562 * 19 16 15 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 16 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 0.96997 * 120.00203 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47040 * 60.00165 * 9 7 2 29 29 H 1.08995 * 109.46981 * 300.00202 * 9 7 2 30 30 H 0.96998 * 120.00189 * 0.02562 * 10 9 7 31 31 H 0.96998 * 119.99800 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46828 * 60.00659 * 14 13 11 33 33 H 1.08999 * 109.47361 * 300.00762 * 14 13 11 34 34 H 1.09002 * 109.46793 * 60.00060 * 15 14 13 35 35 H 1.09003 * 109.46883 * 300.00138 * 15 14 13 36 36 H 1.08995 * 109.47401 * 59.99815 * 19 16 15 37 37 H 1.09004 * 109.47054 * 299.99953 * 19 16 15 38 38 H 1.09005 * 109.47610 * 60.00151 * 20 19 16 39 39 H 1.09000 * 109.47256 * 299.99493 * 20 19 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0011 13 7 2.6297 -5.9077 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3314 -8.2507 -0.0016 16 16 2.7267 -9.9608 -0.0023 17 8 2.0498 -10.2012 -1.2285 18 8 2.0491 -10.2021 1.2232 19 6 4.2751 -10.9058 -0.0014 20 6 3.9591 -12.4027 -0.0026 21 6 5.2456 -13.1878 -0.0025 22 6 5.8349 -13.5486 1.1948 23 6 7.0146 -14.2692 1.1948 24 6 7.6047 -14.6294 -0.0022 25 6 7.0181 -14.2639 -1.1994 26 6 5.8360 -13.5474 -1.1996 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 3.1568 -3.4354 -0.0002 31 1 3.5833 -5.7305 -0.0012 32 1 1.5355 -7.4601 -0.8914 33 1 1.5360 -7.4604 0.8885 34 1 3.9369 -8.0793 0.8884 35 1 3.9369 -8.0793 -0.8916 36 1 4.8523 -10.6566 0.8889 37 1 4.8536 -10.6562 -0.8910 38 1 3.3821 -12.6517 -0.8933 39 1 3.3806 -12.6526 0.8867 40 1 5.3737 -13.2676 2.1301 41 1 7.4753 -14.5507 2.1302 42 1 8.5261 -15.1927 -0.0021 43 1 7.4814 -14.5416 -2.1347 44 1 5.3751 -13.2661 -2.1349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800717140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:40 Heat of formation + Delta-G solvation = -84.707496 kcal Electronic energy + Delta-G solvation = -25403.092531 eV Core-core repulsion = 21447.543762 eV Total energy + Delta-G solvation = -3955.548769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.80536 -39.27069 -37.31717 -36.39119 -35.39895 -34.91115 -34.06678 -32.38868 -31.38317 -30.81583 -30.19946 -27.09819 -25.24640 -23.62245 -23.07894 -22.27514 -21.47272 -20.36604 -19.21971 -18.24734 -17.55061 -17.02242 -16.80311 -16.27314 -16.02623 -15.89835 -15.66970 -15.41450 -15.33244 -14.61527 -14.37989 -14.10194 -13.94142 -13.83650 -13.80016 -13.64530 -13.13957 -12.72855 -12.46088 -12.40931 -12.35244 -12.27595 -12.07173 -11.95946 -11.87608 -11.62329 -11.42989 -11.33618 -10.98339 -10.87276 -10.86236 -10.30924 -9.47009 -9.41826 -9.38861 -9.22834 -8.89115 -8.70524 -7.79603 -6.15049 -4.22088 -0.50149 0.83088 0.90472 2.32619 3.03606 3.25040 3.25572 3.30612 3.32081 3.47675 3.59222 3.88414 4.10819 4.14280 4.14713 4.24415 4.32857 4.36492 4.52960 4.53160 4.64658 4.86691 4.88252 4.97615 5.01135 5.09884 5.19454 5.20790 5.27117 5.50011 5.51622 5.55230 5.62508 5.96513 6.03292 6.08684 6.49980 6.67373 7.06323 7.48373 7.52759 7.56892 7.87840 8.02563 8.74596 8.90321 9.29160 9.46347 10.95105 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.001586 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.795837 B =17653.584817 C =18283.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.727 5.727 11 C 0.691 3.309 12 O -0.596 6.596 13 N -0.753 5.753 14 C 0.154 3.846 15 C -0.632 4.632 16 S 2.426 3.574 17 O -0.928 6.928 18 O -0.928 6.928 19 C -0.608 4.608 20 C -0.073 4.073 21 C -0.077 4.077 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.116 4.116 27 H 0.267 0.733 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.387 0.613 31 H 0.394 0.606 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.126 -30.067 -0.005 35.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.391 3.609 12 O -0.475 6.475 13 N -0.412 5.412 14 C 0.028 3.972 15 C -0.760 4.760 16 S 2.607 3.393 17 O -0.925 6.925 18 O -0.925 6.925 19 C -0.736 4.736 20 C -0.111 4.111 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.219 0.781 31 H 0.227 0.773 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.913 -30.376 -0.007 34.292 hybrid contribution 2.441 1.434 0.003 2.831 sum 18.354 -28.942 -0.004 34.271 Atomic orbital electron populations 1.69969 1.06085 1.27417 1.48708 1.24945 0.94921 0.99393 0.94746 0.86458 0.79377 0.82322 0.78602 1.20123 1.21057 1.20130 1.21181 0.93211 0.90438 1.53407 0.92007 1.19013 0.87779 0.80969 0.97754 1.45714 1.10845 1.04276 1.77096 1.16158 0.85176 0.81076 0.78518 1.90898 1.14131 1.84140 1.58329 1.45030 1.08976 1.04265 1.82960 1.20610 0.92354 0.80280 1.03966 1.30665 1.10359 1.22730 1.12217 1.07952 0.77840 0.77844 0.75688 1.93622 1.69784 1.83592 1.45495 1.93620 1.69771 1.83572 1.45537 1.30398 1.22699 1.08401 1.12147 1.20318 0.96071 0.89593 1.05129 1.19633 0.96190 0.98491 0.93538 1.21133 0.95969 0.98608 0.97688 1.21186 0.95779 0.98372 0.98270 1.21211 1.00087 1.00135 0.92644 1.21186 0.95767 0.98384 0.98269 1.21132 0.95934 0.98646 0.97688 0.92372 0.95611 0.95624 0.78132 0.77255 0.90202 0.90211 0.84226 0.84233 0.84601 0.84609 0.88962 0.88958 0.85698 0.85887 0.86038 0.85885 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 10 N -0.73 -15.52 5.55 -66.41 -0.37 -15.89 16 11 C 0.69 14.37 8.57 -86.92 -0.74 13.63 16 12 O -0.60 -15.19 16.34 5.29 0.09 -15.11 16 13 N -0.75 -10.88 5.56 -65.22 -0.36 -11.24 16 14 C 0.15 1.95 5.68 -4.04 -0.02 1.93 16 15 C -0.63 -4.19 5.92 37.16 0.22 -3.97 16 16 S 2.43 18.47 4.72 -107.50 -0.51 17.96 16 17 O -0.93 -10.51 18.10 -57.83 -1.05 -11.55 16 18 O -0.93 -10.51 18.10 -57.83 -1.05 -11.56 16 19 C -0.61 -2.56 5.79 37.15 0.22 -2.35 16 20 C -0.07 -0.42 5.35 -27.88 -0.15 -0.57 16 21 C -0.08 -0.49 5.13 -104.62 -0.54 -1.03 16 22 C -0.12 -0.70 9.70 -39.58 -0.38 -1.09 16 23 C -0.12 -0.67 10.05 -39.58 -0.40 -1.07 16 24 C -0.12 -0.68 10.05 -39.58 -0.40 -1.08 16 25 C -0.12 -0.67 10.05 -39.58 -0.40 -1.07 16 26 C -0.12 -0.70 9.70 -39.58 -0.38 -1.09 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.39 6.89 8.34 -40.82 -0.34 6.55 16 31 H 0.39 4.15 8.49 -40.82 -0.35 3.80 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.14 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.14 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.12 0.45 8.06 -52.49 -0.42 0.02 16 43 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -40.08 392.98 -11.59 -51.67 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.56 Total: 3.49 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.42 Total: -4.06 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.00 Total: -52.58 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -2.01 Total: -38.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 18.47 SS G_CDS: -0.51 Total: 17.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.08 -11.59 -51.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800717140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.034 kcal (2) G-P(sol) polarization free energy of solvation -40.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds