Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47448 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47513 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46969 * 120.00051 * 3 2 1 7 7 C 1.37873 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00307 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00053 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99774 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00162 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00076 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47013 * 180.02562 * 14 13 11 16 16 S 1.81394 * 109.46906 * 180.02562 * 15 14 13 17 17 O 1.42105 * 108.58026 * 65.51514 * 16 15 14 18 18 O 1.42097 * 108.58083 * 294.48551 * 16 15 14 19 19 C 1.81400 * 101.92110 * 180.02562 * 16 15 14 20 20 C 1.52995 * 109.47284 * 180.02562 * 19 16 15 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 16 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 0.96997 * 120.00203 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47040 * 60.00165 * 9 7 2 29 29 H 1.08995 * 109.46981 * 300.00202 * 9 7 2 30 30 H 0.96998 * 120.00189 * 0.02562 * 10 9 7 31 31 H 0.96998 * 119.99800 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46828 * 60.00659 * 14 13 11 33 33 H 1.08999 * 109.47361 * 300.00762 * 14 13 11 34 34 H 1.09002 * 109.46793 * 60.00060 * 15 14 13 35 35 H 1.09003 * 109.46883 * 300.00138 * 15 14 13 36 36 H 1.08995 * 109.47401 * 59.99815 * 19 16 15 37 37 H 1.09004 * 109.47054 * 299.99953 * 19 16 15 38 38 H 1.09005 * 109.47610 * 60.00151 * 20 19 16 39 39 H 1.09000 * 109.47256 * 299.99493 * 20 19 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1055 -0.0011 13 7 2.6297 -5.9077 -0.0016 14 6 2.1413 -7.2890 -0.0016 15 6 3.3314 -8.2507 -0.0016 16 16 2.7267 -9.9608 -0.0023 17 8 2.0498 -10.2012 -1.2285 18 8 2.0491 -10.2021 1.2232 19 6 4.2751 -10.9058 -0.0014 20 6 3.9591 -12.4027 -0.0026 21 6 5.2456 -13.1878 -0.0025 22 6 5.8349 -13.5486 1.1948 23 6 7.0146 -14.2692 1.1948 24 6 7.6047 -14.6294 -0.0022 25 6 7.0181 -14.2639 -1.1994 26 6 5.8360 -13.5474 -1.1996 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 3.1568 -3.4354 -0.0002 31 1 3.5833 -5.7305 -0.0012 32 1 1.5355 -7.4601 -0.8914 33 1 1.5360 -7.4604 0.8885 34 1 3.9369 -8.0793 0.8884 35 1 3.9369 -8.0793 -0.8916 36 1 4.8523 -10.6566 0.8889 37 1 4.8536 -10.6562 -0.8910 38 1 3.3821 -12.6517 -0.8933 39 1 3.3806 -12.6526 0.8867 40 1 5.3737 -13.2676 2.1301 41 1 7.4753 -14.5507 2.1302 42 1 8.5261 -15.1927 -0.0021 43 1 7.4814 -14.5416 -2.1347 44 1 5.3751 -13.2661 -2.1349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800717140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -116.616342 kcal Electronic energy + Delta-G solvation = -25404.476202 eV Core-core repulsion = 21447.543762 eV Total energy + Delta-G solvation = -3956.932441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.92827 -40.18091 -38.04799 -37.13344 -36.73641 -35.97864 -35.31250 -34.38460 -31.95616 -31.75417 -30.61251 -29.04711 -25.89249 -24.94043 -23.79488 -23.45448 -22.02834 -21.87966 -20.11124 -19.66875 -18.17310 -18.09324 -17.59538 -17.44422 -17.12675 -16.78754 -16.73380 -16.37129 -16.18751 -15.92028 -15.44886 -15.36115 -14.90767 -14.71524 -14.31475 -14.18902 -14.08094 -14.03061 -14.02652 -13.42021 -13.17006 -13.07725 -13.06388 -12.90933 -12.85558 -12.64958 -12.41994 -12.30161 -12.22648 -12.02669 -11.78629 -11.49526 -11.44582 -11.19544 -10.78977 -10.37199 -9.80934 -9.64108 -9.63006 -8.27056 -6.44070 -1.09839 0.43415 0.51326 1.44529 1.49209 1.57235 1.77153 1.83568 2.18226 2.40285 2.62077 2.88920 3.06586 3.07856 3.41074 3.56417 3.74368 3.74784 3.82834 3.85170 4.12832 4.19384 4.30220 4.32609 4.48229 4.53511 4.56264 4.65636 4.72764 4.83396 4.92911 5.08463 5.14859 5.19284 5.27135 5.37212 5.48579 5.59001 5.65725 5.66123 5.68868 5.84989 6.13241 6.23808 6.67386 7.24633 7.29709 7.67908 8.85075 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.001586 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.795837 B =17653.584817 C =18283.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.283 3.717 10 N -0.719 5.719 11 C 0.687 3.313 12 O -0.650 6.650 13 N -0.724 5.724 14 C 0.138 3.862 15 C -0.616 4.616 16 S 2.424 3.576 17 O -0.975 6.975 18 O -0.976 6.976 19 C -0.579 4.579 20 C -0.085 4.085 21 C -0.085 4.085 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.129 4.129 27 H 0.269 0.731 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.407 0.593 31 H 0.419 0.581 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.485 -30.132 -0.005 37.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.159 3.841 10 N -0.373 5.373 11 C 0.386 3.614 12 O -0.533 6.533 13 N -0.383 5.383 14 C 0.012 3.988 15 C -0.744 4.744 16 S 2.611 3.389 17 O -0.973 6.973 18 O -0.973 6.973 19 C -0.711 4.711 20 C -0.123 4.123 21 C -0.086 4.086 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.147 4.147 27 H 0.077 0.923 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.243 0.757 31 H 0.257 0.743 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.196 0.804 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.184 0.816 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 20.327 -30.485 -0.007 36.641 hybrid contribution 1.129 1.295 0.003 1.718 sum 21.456 -29.190 -0.004 36.227 Atomic orbital electron populations 1.70146 1.08340 1.28641 1.49842 1.26089 0.95776 1.03950 0.93845 0.85162 0.77829 0.76425 0.79483 1.18607 1.21227 1.18620 1.21579 0.94396 0.90358 1.53072 0.89574 1.18446 0.88188 0.83384 0.94041 1.45254 1.11039 1.03553 1.77445 1.16394 0.85135 0.81816 0.78058 1.90864 1.16974 1.84973 1.60457 1.44707 1.09388 1.03535 1.80699 1.20778 0.95153 0.80238 1.02607 1.30551 1.08409 1.19397 1.16090 1.07682 0.79077 0.78391 0.73771 1.93564 1.72428 1.84438 1.46827 1.93562 1.72416 1.84419 1.46868 1.30160 1.19518 1.06232 1.15187 1.20428 0.96125 0.90522 1.05233 1.19691 0.96214 0.98928 0.93798 1.21360 0.96295 0.98872 0.98137 1.21452 0.95810 0.98219 0.99080 1.21497 1.00731 1.00138 0.92637 1.21452 0.95799 0.98228 0.99077 1.21359 0.96260 0.98909 0.98137 0.92261 0.99629 0.99642 0.75696 0.74348 0.91858 0.91865 0.80448 0.80456 0.81631 0.81635 0.89074 0.89074 0.84728 0.84472 0.84516 0.84470 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.04 29.54 68.60 2.03 44.06 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -30.21 9.28 25.60 0.24 -29.97 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.28 15.79 5.43 85.64 0.46 16.25 16 10 N -0.72 -30.74 5.55 -482.29 -2.68 -33.42 16 11 C 0.69 28.86 8.57 179.05 1.53 30.39 16 12 O -0.65 -34.70 16.34 -4.00 -0.07 -34.76 16 13 N -0.72 -19.80 5.56 -478.52 -2.66 -22.46 16 14 C 0.14 3.40 5.68 86.38 0.49 3.89 16 15 C -0.62 -6.23 5.92 71.98 0.43 -5.80 16 16 S 2.42 34.20 4.72 -56.49 -0.27 33.93 16 17 O -0.98 -22.33 18.10 -127.37 -2.31 -24.64 16 18 O -0.98 -22.34 18.10 -127.37 -2.30 -24.64 16 19 C -0.58 -2.99 5.79 71.98 0.42 -2.58 16 20 C -0.08 -0.82 5.35 29.85 0.16 -0.66 16 21 C -0.09 -0.91 5.13 -19.86 -0.10 -1.01 16 22 C -0.13 -1.32 9.70 22.27 0.22 -1.10 16 23 C -0.13 -1.21 10.05 22.27 0.22 -0.98 16 24 C -0.13 -1.21 10.05 22.27 0.22 -0.99 16 25 C -0.13 -1.21 10.05 22.27 0.22 -0.98 16 26 C -0.13 -1.32 9.70 22.27 0.22 -1.10 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.41 13.80 8.34 -92.71 -0.77 13.03 16 31 H 0.42 7.33 8.49 -92.71 -0.79 6.55 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 39 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 40 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 44 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -93.17 392.98 -3.32 -96.49 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.54 Total: 15.71 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.19 Total: 5.98 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -5.05 Total: -112.13 kcal Atomic # 8 Polarization: -79.37 SS G_CDS: -4.68 Total: -84.04 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 34.20 SS G_CDS: -0.27 Total: 33.93 kcal Total: -93.17 -3.32 -96.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800717140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.127 kcal (2) G-P(sol) polarization free energy of solvation -93.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds