Wall clock time and date at job start Sat Apr 11 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48505 * 109.46915 * 269.99624 * 3 2 1 5 5 H 1.48499 * 109.47311 * 29.99619 * 3 2 1 6 6 H 1.48503 * 109.47303 * 149.99891 * 3 2 1 7 7 C 1.37879 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00286 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46890 * 300.00274 * 9 7 2 11 11 O 1.42903 * 109.46941 * 60.00128 * 9 7 2 12 12 C 1.52997 * 109.47095 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47138 * 180.02562 * 12 9 7 14 14 C 1.46893 * 111.00242 * 190.00373 * 13 12 9 15 15 C 1.53232 * 109.34021 * 187.25298 * 14 13 12 16 16 N 1.47074 * 108.52422 * 306.17011 * 15 14 13 17 17 S 1.65605 * 120.88187 * 231.18950 * 16 15 14 18 18 O 1.42099 * 106.40070 * 336.45507 * 17 16 15 19 19 O 1.42104 * 106.40020 * 203.53770 * 17 16 15 20 20 C 1.76199 * 107.22002 * 89.99834 * 17 16 15 21 21 C 1.38234 * 120.00116 * 89.99719 * 20 17 16 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 17 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99639 * 269.97699 * 20 17 16 26 26 C 1.47077 * 118.23774 * 51.45414 * 16 15 14 27 27 C 1.46904 * 110.99697 * 314.30561 * 13 12 9 28 28 H 0.97000 * 119.99645 * 0.02562 * 1 2 3 29 29 H 0.96694 * 114.00077 * 59.99251 * 11 9 7 30 30 H 1.09005 * 109.47154 * 60.00439 * 12 9 7 31 31 H 1.08993 * 109.47731 * 300.00483 * 12 9 7 32 32 H 1.08999 * 109.49553 * 67.29391 * 14 13 12 33 33 H 1.09000 * 109.51351 * 307.22801 * 14 13 12 34 34 H 1.09010 * 109.62810 * 186.45802 * 15 14 13 35 35 H 1.09000 * 109.62870 * 65.88395 * 15 14 13 36 36 H 1.08001 * 119.99769 * 359.97438 * 21 20 17 37 37 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 39 39 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00489 * 0.02562 * 25 20 17 41 41 H 1.09006 * 109.62759 * 68.25464 * 26 16 15 42 42 H 1.09000 * 109.63080 * 188.83170 * 26 16 15 43 43 H 1.09000 * 109.49215 * 292.69959 * 27 13 12 44 44 H 1.09002 * 109.49299 * 52.78718 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 7 1.5107 -4.9343 -0.0001 14 6 2.4169 -6.0656 0.2381 15 6 1.6496 -7.3787 0.0507 16 7 0.4547 -7.3480 0.9076 17 16 0.1164 -8.5984 1.9394 18 8 0.7774 -9.7416 1.4148 19 8 -1.2833 -8.5522 2.1804 20 6 0.8980 -8.2330 3.4757 21 6 0.2176 -7.5199 4.4450 22 6 0.8307 -7.2337 5.6504 23 6 2.1239 -7.6610 5.8869 24 6 2.8039 -8.3750 4.9180 25 6 2.1914 -8.6597 3.7118 26 6 -0.4350 -6.1801 0.8196 27 6 0.4175 -4.9115 0.9810 28 1 -0.4849 0.8401 -0.0004 29 1 0.9223 -2.5298 -1.9975 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8893 32 1 2.8048 -6.0130 1.2554 33 1 3.2450 -6.0240 -0.4695 34 1 2.2841 -8.2176 0.3370 35 1 1.3498 -7.4819 -0.9921 36 1 -0.7929 -7.1864 4.2605 37 1 0.2990 -6.6770 6.4080 38 1 2.6045 -7.4336 6.8269 39 1 3.8144 -8.7085 5.1024 40 1 2.7230 -9.2167 2.9545 41 1 -0.9314 -6.1703 -0.1508 42 1 -1.1795 -6.2262 1.6144 43 1 0.8332 -4.8750 1.9880 44 1 -0.2048 -4.0327 0.8118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:47 Heat of formation + Delta-G solvation = -76.053727 kcal Electronic energy + Delta-G solvation = -28379.447174 eV Core-core repulsion = 24424.273660 eV Total energy + Delta-G solvation = -3955.173514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.33021 -38.83275 -37.38865 -36.01470 -35.92339 -33.73397 -32.12326 -31.55583 -31.31812 -30.99367 -28.74991 -26.23915 -23.95677 -23.61851 -23.39127 -22.99092 -21.01436 -19.94261 -18.95265 -18.29833 -17.62013 -16.96482 -16.28391 -16.18397 -15.21524 -14.93592 -14.89906 -14.74682 -14.65423 -14.45446 -14.36044 -14.14305 -13.82232 -13.69699 -13.29787 -13.15273 -12.73215 -12.51369 -12.31004 -12.27914 -12.17515 -11.76962 -11.55738 -11.39171 -11.21933 -11.10954 -11.02719 -10.94662 -10.87137 -10.60908 -10.52260 -10.10567 -9.69190 -9.32457 -9.16474 -8.89403 -8.60034 -8.11377 -7.77131 -6.05792 -4.23881 0.21892 0.59970 1.01434 2.78534 3.24020 3.28476 3.31504 3.33385 3.66701 4.11198 4.25307 4.41727 4.54396 4.59846 4.66604 4.68705 5.01534 5.09788 5.15422 5.22256 5.31133 5.39317 5.39529 5.46678 5.59578 5.62016 5.76062 5.80231 5.92824 5.94777 6.05532 6.06202 6.07186 6.17199 6.26899 6.29701 6.43067 6.54259 6.60969 6.77429 7.47476 7.56181 7.70640 7.79406 8.14421 8.79242 9.39849 9.55777 10.98355 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.003210 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.508981 B = 8720.040797 C = 9474.582462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.556 6.556 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.039 3.961 15 C 0.129 3.871 16 N -0.995 5.995 17 S 2.691 3.309 18 O -0.959 6.959 19 O -0.956 6.956 20 C -0.676 4.676 21 C -0.019 4.019 22 C -0.140 4.140 23 C -0.066 4.066 24 C -0.142 4.142 25 C -0.022 4.022 26 C 0.127 3.873 27 C 0.038 3.962 28 H 0.261 0.739 29 H 0.346 0.654 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -16.804 8.260 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.076 0.924 11 O -0.358 6.358 12 C -0.097 4.097 13 N -0.249 5.249 14 C -0.092 4.092 15 C 0.003 3.997 16 N -0.835 5.835 17 S 2.782 3.218 18 O -0.950 6.950 19 O -0.946 6.946 20 C -0.762 4.762 21 C -0.038 4.038 22 C -0.159 4.159 23 C -0.085 4.085 24 C -0.161 4.161 25 C -0.041 4.041 26 C 0.003 3.997 27 C -0.092 4.092 28 H 0.071 0.929 29 H 0.189 0.811 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.678 -17.547 8.079 19.502 hybrid contribution 1.989 1.659 1.114 2.820 sum 4.667 -15.888 9.193 18.940 Atomic orbital electron populations 1.70064 1.05888 1.26491 1.46938 1.25004 0.94683 0.99060 0.93786 0.86682 0.79919 0.83547 0.78261 1.20471 1.21120 1.19938 1.21634 0.93155 0.91587 1.54997 0.92759 1.19437 0.87837 0.88885 0.86648 0.92447 1.86529 1.37848 1.96284 1.15122 1.23075 0.97583 0.89402 0.99616 1.61898 1.10991 1.02957 1.49029 1.22468 0.95441 0.91568 0.99675 1.21555 0.85040 0.97527 0.95530 1.57738 1.35239 1.36968 1.53512 1.02018 0.73700 0.73034 0.73061 1.93561 1.76635 1.46604 1.78166 1.93577 1.29034 1.86289 1.85698 1.31143 1.07558 1.14336 1.23163 1.20974 0.99089 0.91561 0.92180 1.21336 0.95698 1.01116 0.97721 1.21503 0.94345 0.93872 0.98749 1.21304 1.00560 1.00176 0.94069 1.20924 0.92101 0.93762 0.97300 1.21766 0.91185 0.83179 1.03619 1.22686 0.94686 0.98717 0.93100 0.92940 0.81064 0.95617 0.91538 0.95182 0.90007 0.89582 0.89884 0.84216 0.84940 0.85268 0.85096 0.84418 0.89601 0.89407 0.95391 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 12.84 55.43 0.71 -23.84 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.58 -15.18 8.76 -34.44 -0.30 -15.48 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.23 5.45 2.12 -27.88 -0.06 5.39 16 10 H 0.06 1.48 6.18 -51.93 -0.32 1.16 16 11 O -0.56 -13.57 12.40 -35.23 -0.44 -14.00 16 12 C 0.03 0.59 4.87 -3.82 -0.02 0.57 16 13 N -0.52 -8.72 4.64 -234.03 -1.09 -9.80 16 14 C 0.04 0.51 5.58 -3.71 -0.02 0.49 16 15 C 0.13 1.53 6.53 -3.61 -0.02 1.50 16 16 N -1.00 -12.68 3.32 -112.98 -0.38 -13.06 16 17 S 2.69 34.74 5.70 -107.50 -0.61 34.12 16 18 O -0.96 -13.82 16.06 -57.17 -0.92 -14.74 16 19 O -0.96 -14.38 16.05 -57.17 -0.92 -15.30 16 20 C -0.68 -7.92 5.97 -39.58 -0.24 -8.16 16 21 C -0.02 -0.21 9.52 -39.59 -0.38 -0.59 16 22 C -0.14 -1.34 10.05 -39.59 -0.40 -1.74 16 23 C -0.07 -0.58 10.05 -39.58 -0.40 -0.98 16 24 C -0.14 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.02 -0.23 9.52 -39.58 -0.38 -0.60 16 26 C 0.13 1.76 6.56 -3.37 -0.02 1.73 16 27 C 0.04 0.61 5.06 -3.46 -0.02 0.59 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.35 7.69 9.04 45.56 0.41 8.10 16 30 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.09 0.86 7.22 -51.92 -0.37 0.48 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.14 1.42 7.62 -52.49 -0.40 1.02 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.14 1.25 7.62 -52.49 -0.40 0.85 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.09 7.21 -51.93 -0.37 0.72 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 2.11 5.58 -51.93 -0.29 1.82 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -32.98 369.50 -11.34 -44.33 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.51 Total: 7.96 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.74 Total: -16.84 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.75 Total: -46.70 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.27 Total: -44.04 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 34.74 SS G_CDS: -0.61 Total: 34.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.98 -11.34 -44.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.726 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds