Wall clock time and date at job start Sat Apr 11 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48505 * 109.46915 * 269.99624 * 3 2 1 5 5 H 1.48499 * 109.47311 * 29.99619 * 3 2 1 6 6 H 1.48503 * 109.47303 * 149.99891 * 3 2 1 7 7 C 1.37879 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00286 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46890 * 300.00274 * 9 7 2 11 11 O 1.42903 * 109.46941 * 60.00128 * 9 7 2 12 12 C 1.52997 * 109.47095 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47138 * 180.02562 * 12 9 7 14 14 C 1.46893 * 111.00242 * 190.00373 * 13 12 9 15 15 C 1.53232 * 109.34021 * 187.25298 * 14 13 12 16 16 N 1.47074 * 108.52422 * 306.17011 * 15 14 13 17 17 S 1.65605 * 120.88187 * 231.18950 * 16 15 14 18 18 O 1.42099 * 106.40070 * 336.45507 * 17 16 15 19 19 O 1.42104 * 106.40020 * 203.53770 * 17 16 15 20 20 C 1.76199 * 107.22002 * 89.99834 * 17 16 15 21 21 C 1.38234 * 120.00116 * 89.99719 * 20 17 16 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 17 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99639 * 269.97699 * 20 17 16 26 26 C 1.47077 * 118.23774 * 51.45414 * 16 15 14 27 27 C 1.46904 * 110.99697 * 314.30561 * 13 12 9 28 28 H 0.97000 * 119.99645 * 0.02562 * 1 2 3 29 29 H 0.96694 * 114.00077 * 59.99251 * 11 9 7 30 30 H 1.09005 * 109.47154 * 60.00439 * 12 9 7 31 31 H 1.08993 * 109.47731 * 300.00483 * 12 9 7 32 32 H 1.08999 * 109.49553 * 67.29391 * 14 13 12 33 33 H 1.09000 * 109.51351 * 307.22801 * 14 13 12 34 34 H 1.09010 * 109.62810 * 186.45802 * 15 14 13 35 35 H 1.09000 * 109.62870 * 65.88395 * 15 14 13 36 36 H 1.08001 * 119.99769 * 359.97438 * 21 20 17 37 37 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 39 39 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.00489 * 0.02562 * 25 20 17 41 41 H 1.09006 * 109.62759 * 68.25464 * 26 16 15 42 42 H 1.09000 * 109.63080 * 188.83170 * 26 16 15 43 43 H 1.09000 * 109.49215 * 292.69959 * 27 13 12 44 44 H 1.09002 * 109.49299 * 52.78718 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2452 -3.6621 0.0005 13 7 1.5107 -4.9343 -0.0001 14 6 2.4169 -6.0656 0.2381 15 6 1.6496 -7.3787 0.0507 16 7 0.4547 -7.3480 0.9076 17 16 0.1164 -8.5984 1.9394 18 8 0.7774 -9.7416 1.4148 19 8 -1.2833 -8.5522 2.1804 20 6 0.8980 -8.2330 3.4757 21 6 0.2176 -7.5199 4.4450 22 6 0.8307 -7.2337 5.6504 23 6 2.1239 -7.6610 5.8869 24 6 2.8039 -8.3750 4.9180 25 6 2.1914 -8.6597 3.7118 26 6 -0.4350 -6.1801 0.8196 27 6 0.4175 -4.9115 0.9810 28 1 -0.4849 0.8401 -0.0004 29 1 0.9223 -2.5298 -1.9975 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8893 32 1 2.8048 -6.0130 1.2554 33 1 3.2450 -6.0240 -0.4695 34 1 2.2841 -8.2176 0.3370 35 1 1.3498 -7.4819 -0.9921 36 1 -0.7929 -7.1864 4.2605 37 1 0.2990 -6.6770 6.4080 38 1 2.6045 -7.4336 6.8269 39 1 3.8144 -8.7085 5.1024 40 1 2.7230 -9.2167 2.9545 41 1 -0.9314 -6.1703 -0.1508 42 1 -1.1795 -6.2262 1.6144 43 1 0.8332 -4.8750 1.9880 44 1 -0.2048 -4.0327 0.8118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809572455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:47 Heat of formation + Delta-G solvation = -101.667419 kcal Electronic energy + Delta-G solvation = -28380.557867 eV Core-core repulsion = 24424.273660 eV Total energy + Delta-G solvation = -3956.284207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14014 -40.02602 -38.47757 -37.65667 -37.04037 -35.16396 -34.17477 -32.30159 -32.17120 -32.00442 -30.41892 -27.82953 -25.49974 -24.83947 -24.23335 -23.72915 -22.43208 -21.34059 -19.97201 -19.33829 -19.00292 -18.47528 -17.21673 -17.04756 -16.66639 -16.47819 -16.23032 -16.01637 -15.82308 -15.71226 -15.52128 -15.39826 -15.15948 -14.61664 -14.52275 -14.30871 -14.07471 -13.55869 -13.49478 -13.30586 -13.28299 -13.11997 -12.95435 -12.84326 -12.73658 -12.60173 -12.26856 -12.24773 -12.16912 -12.06178 -11.92099 -11.61102 -10.88810 -10.65194 -10.45836 -10.17911 -10.06340 -9.97906 -9.10957 -8.11663 -6.36530 -0.75737 -0.20498 0.28091 1.41350 1.42351 1.52146 1.81203 2.39634 2.48998 2.71262 3.04312 3.13740 3.15534 3.61659 3.78881 3.91178 4.04956 4.06905 4.15143 4.24813 4.29698 4.35837 4.36300 4.42202 4.44793 4.60549 4.67158 4.68170 4.73644 4.84784 4.92348 4.96283 5.01396 5.05621 5.13473 5.15178 5.24136 5.35433 5.49045 5.63572 5.79484 5.84558 6.01874 6.22211 6.30386 6.76214 7.37546 7.64413 8.92388 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015127 B = 0.003210 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.508981 B = 8720.040797 C = 9474.582462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.231 3.769 10 H 0.029 0.971 11 O -0.569 6.569 12 C 0.048 3.952 13 N -0.530 5.530 14 C 0.039 3.961 15 C 0.127 3.873 16 N -0.995 5.995 17 S 2.705 3.295 18 O -0.975 6.975 19 O -0.983 6.983 20 C -0.686 4.686 21 C -0.041 4.041 22 C -0.148 4.148 23 C -0.066 4.066 24 C -0.144 4.144 25 C -0.036 4.036 26 C 0.134 3.866 27 C 0.044 3.956 28 H 0.261 0.739 29 H 0.354 0.646 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.027 0.973 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 -17.463 9.110 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.627 4.627 8 H 0.075 0.925 9 C 0.173 3.827 10 H 0.047 0.953 11 O -0.372 6.372 12 C -0.080 4.080 13 N -0.255 5.255 14 C -0.090 4.090 15 C 0.002 3.998 16 N -0.834 5.834 17 S 2.799 3.201 18 O -0.965 6.965 19 O -0.973 6.973 20 C -0.775 4.775 21 C -0.060 4.060 22 C -0.167 4.167 23 C -0.084 4.084 24 C -0.163 4.163 25 C -0.055 4.055 26 C 0.009 3.991 27 C -0.086 4.086 28 H 0.069 0.931 29 H 0.198 0.802 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.849 -18.230 8.896 20.857 hybrid contribution 1.347 1.822 0.922 2.446 sum 6.196 -16.409 9.818 20.101 Atomic orbital electron populations 1.70201 1.07514 1.27261 1.48440 1.25817 0.95411 1.02625 0.93464 0.85630 0.78738 0.79215 0.78395 1.19903 1.21063 1.19063 1.22060 0.93498 0.92933 1.54192 0.92475 1.19288 0.87868 0.90039 0.85469 0.95291 1.86487 1.38599 1.96404 1.15720 1.22692 0.96260 0.89268 0.99741 1.61864 1.11473 1.02782 1.49391 1.22576 0.95441 0.90637 1.00375 1.21701 0.84832 0.97481 0.95772 1.57670 1.35426 1.36257 1.54028 1.01362 0.72981 0.72562 0.73173 1.93531 1.76745 1.47375 1.78886 1.93536 1.30991 1.86637 1.86161 1.30848 1.08412 1.15920 1.22337 1.21161 0.99470 0.92313 0.93104 1.21669 0.96428 1.01083 0.97517 1.21942 0.93904 0.92669 0.99844 1.21703 1.01782 0.99471 0.93338 1.21209 0.91750 0.94022 0.98515 1.21622 0.91059 0.82503 1.03919 1.22526 0.94500 0.98581 0.92967 0.93052 0.80165 0.95879 0.90871 0.94885 0.88268 0.87183 0.89430 0.84343 0.82995 0.82232 0.82280 0.83307 0.89894 0.88393 0.95483 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.30 12.84 21.45 0.28 -52.03 16 2 C 0.03 1.60 5.40 84.66 0.46 2.06 16 3 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.59 -31.20 8.76 25.60 0.22 -30.97 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.23 11.20 2.12 29.85 0.06 11.26 16 10 H 0.03 1.58 6.18 -2.39 -0.01 1.56 16 11 O -0.57 -28.40 12.40 -148.98 -1.85 -30.25 16 12 C 0.05 1.85 4.87 86.30 0.42 2.27 16 13 N -0.53 -17.40 4.64 -894.33 -4.15 -21.55 16 14 C 0.04 0.97 5.58 86.38 0.48 1.45 16 15 C 0.13 2.78 6.53 86.35 0.56 3.35 16 16 N -1.00 -24.65 3.32 -511.35 -1.70 -26.35 16 17 S 2.71 68.56 5.70 -56.49 -0.32 68.23 16 18 O -0.97 -27.14 16.06 -128.00 -2.06 -29.19 16 19 O -0.98 -29.84 16.05 -128.00 -2.05 -31.89 16 20 C -0.69 -15.49 5.97 22.27 0.13 -15.35 16 21 C -0.04 -0.89 9.52 22.27 0.21 -0.68 16 22 C -0.15 -2.58 10.05 22.27 0.22 -2.36 16 23 C -0.07 -0.95 10.05 22.27 0.22 -0.73 16 24 C -0.14 -2.20 10.05 22.27 0.22 -1.97 16 25 C -0.04 -0.68 9.52 22.27 0.21 -0.47 16 26 C 0.13 3.74 6.56 86.50 0.57 4.31 16 27 C 0.04 1.46 5.06 86.54 0.44 1.90 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.35 15.94 9.04 -74.06 -0.67 15.27 16 30 H 0.02 0.89 8.08 -2.38 -0.02 0.87 16 31 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 2.14 8.11 -2.39 -0.02 2.12 16 34 H 0.11 1.92 7.22 -2.38 -0.02 1.90 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.14 2.88 7.62 -2.91 -0.02 2.86 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.15 2.39 7.62 -2.91 -0.02 2.37 16 41 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.10 2.50 7.21 -2.39 -0.02 2.48 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 3.07 5.58 -2.39 -0.01 3.06 16 Total: -1.00 -70.91 369.50 -5.04 -75.96 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.35 Total: 28.70 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.44 Total: -25.93 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -5.58 Total: -99.93 kcal Atomic # 8 Polarization: -85.37 SS G_CDS: -5.96 Total: -91.33 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 68.56 SS G_CDS: -0.32 Total: 68.23 kcal Total: -70.91 -5.04 -75.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.712 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds